Wall clock time and date at job start Tue Mar 31 2020 19:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47298 * 2 1 4 4 H 1.09000 * 109.46978 * 305.11502 * 3 2 1 5 5 O 1.42901 * 109.46932 * 65.11178 * 3 2 1 6 6 C 1.42895 * 114.00332 * 210.00142 * 5 3 2 7 7 C 1.50691 * 109.47037 * 185.11272 * 3 2 1 8 8 O 1.21301 * 120.00030 * 248.30868 * 7 3 2 9 9 N 1.34773 * 120.00129 * 68.31262 * 7 3 2 10 10 C 1.46496 * 120.00199 * 6.04077 * 9 7 3 11 11 C 1.50706 * 109.46982 * 86.48125 * 10 9 7 12 12 H 1.07999 * 119.99948 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00070 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99923 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00210 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47037 * 89.99940 * 15 13 11 17 17 H 1.48494 * 109.47220 * 210.00172 * 15 13 11 18 18 H 1.48508 * 109.46833 * 330.00432 * 15 13 11 19 19 C 1.40108 * 120.00017 * 186.04521 * 9 7 3 20 20 C 1.38847 * 120.01728 * 187.68612 * 19 9 7 21 21 C 1.38124 * 120.03582 * 179.77018 * 20 19 9 22 22 C 1.38714 * 120.16084 * 0.54816 * 21 20 19 23 23 C 1.38991 * 119.93431 * 359.63951 * 22 21 20 24 24 C 1.38650 * 119.88390 * 0.12798 * 23 22 21 25 25 O 1.36115 * 120.78297 * 180.26302 * 23 22 21 26 26 C 1.43165 * 116.73481 * 342.80644 * 25 23 22 27 27 C 1.53473 * 108.24269 * 46.19226 * 26 25 23 28 28 O 1.36208 * 119.31958 * 179.55551 * 22 21 20 29 29 H 1.08995 * 109.47399 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47302 * 299.99775 * 1 2 3 31 31 H 1.09006 * 109.47401 * 59.99728 * 1 2 3 32 32 H 1.09004 * 109.46669 * 240.00631 * 2 1 3 33 33 H 1.09000 * 109.47232 * 120.00693 * 2 1 3 34 34 H 1.09005 * 109.46696 * 59.99808 * 6 5 3 35 35 H 1.08989 * 109.47446 * 179.97438 * 6 5 3 36 36 H 1.08999 * 109.46710 * 300.00464 * 6 5 3 37 37 H 1.08997 * 109.47441 * 206.47947 * 10 9 7 38 38 H 1.09001 * 109.47404 * 326.48695 * 10 9 7 39 39 H 0.97001 * 119.99484 * 179.97438 * 14 13 11 40 40 H 1.07993 * 119.98466 * 0.05236 * 20 19 9 41 41 H 1.08001 * 119.92398 * 180.29366 * 21 20 19 42 42 H 1.07998 * 119.98965 * 179.97438 * 24 23 22 43 43 H 1.09003 * 109.71114 * 165.87208 * 26 25 23 44 44 H 1.09000 * 109.70988 * 286.50307 * 26 25 23 45 45 H 1.08993 * 109.71815 * 59.91565 * 27 26 25 46 46 H 1.09004 * 109.70852 * 180.55524 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6038 1.9821 -0.8406 5 8 1.6642 2.0806 1.2222 6 6 1.4579 3.4895 1.1028 7 6 3.5416 1.4443 -0.1266 8 8 4.2285 1.8042 0.8062 9 7 4.1214 1.0462 -1.2763 10 6 3.2943 0.7384 -2.4456 11 6 3.0315 2.0031 -3.2219 12 1 3.4401 2.9421 -2.8789 13 6 2.2703 1.9612 -4.3708 14 7 1.7732 0.8176 -4.7888 15 14 1.9452 3.5286 -5.3335 16 1 3.0147 3.7184 -6.3461 17 1 0.6301 3.4268 -6.0156 18 1 1.9324 4.6868 -4.4040 19 6 5.5153 0.9267 -1.3531 20 6 6.1244 0.6729 -2.5748 21 6 7.4988 0.5597 -2.6518 22 6 8.2738 0.6877 -1.5085 23 6 7.6667 0.9378 -0.2835 24 6 6.2873 1.0562 -0.2074 25 8 8.4108 1.0718 0.8484 26 6 9.7540 0.5790 0.7981 27 6 10.3970 1.0692 -0.5065 28 8 9.6270 0.5639 -1.6026 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 0.6625 3.6805 0.3824 35 1 1.1753 3.8988 2.0726 36 1 2.3783 3.9638 0.7621 37 1 3.8161 0.0234 -3.0817 38 1 2.3471 0.3098 -2.1180 39 1 1.2373 0.7883 -5.5969 40 1 5.5235 0.5685 -3.4661 41 1 7.9710 0.3670 -3.6038 42 1 5.8138 1.2502 0.7436 43 1 10.3171 0.9589 1.6506 44 1 9.7468 -0.5108 0.8176 45 1 10.3980 2.1588 -0.5292 46 1 11.4199 0.6985 -0.5740 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352050035.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:41 Heat of formation + Delta-G solvation = -108.142686 kcal Electronic energy + Delta-G solvation = -30336.790735 eV Core-core repulsion = 26193.354831 eV Total energy + Delta-G solvation = -4143.435904 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.00398 -40.12932 -37.86545 -36.95305 -36.51589 -35.19609 -33.12687 -32.73307 -30.69406 -30.10919 -28.21618 -27.59215 -26.98352 -25.64710 -24.32694 -23.41624 -22.40578 -21.73868 -20.53619 -19.32148 -18.16160 -17.49928 -17.08757 -16.75919 -16.58161 -15.93811 -15.63194 -15.11771 -15.04463 -14.71866 -14.69456 -14.34059 -14.16412 -14.03263 -13.74250 -13.57752 -13.24094 -12.95219 -12.81798 -12.56166 -12.28359 -12.06583 -11.95730 -11.58705 -11.40370 -11.33150 -11.19264 -10.99081 -10.97213 -10.89992 -10.54119 -10.40328 -10.36763 -10.28428 -9.94042 -9.84334 -8.93069 -8.72324 -8.47644 -8.01597 -7.02831 -6.32193 -4.41542 1.68478 1.79972 3.06980 3.15439 3.23384 3.25086 3.27046 3.36317 3.60362 4.14397 4.22989 4.30446 4.35433 4.83291 4.91898 4.94704 5.00716 5.05395 5.25224 5.27774 5.42699 5.46154 5.61134 5.62169 5.67768 5.74409 5.79204 5.89071 5.94038 5.96064 6.10248 6.18429 6.24560 6.29811 6.37686 6.53903 6.57923 6.78174 6.80769 6.92437 7.03386 7.20811 7.36174 7.51835 7.61423 7.82818 7.85399 8.03440 8.61008 8.74793 9.26828 10.73347 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010261 B = 0.004478 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2728.065123 B = 6251.309090 C = 8010.929302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.120 4.120 3 C 0.079 3.921 4 H 0.107 0.893 5 O -0.362 6.362 6 C 0.031 3.969 7 C 0.496 3.504 8 O -0.528 6.528 9 N -0.531 5.531 10 C 0.216 3.784 11 C -0.545 4.545 12 H 0.062 0.938 13 C 0.071 3.929 14 N -0.885 5.885 15 Si 0.897 3.103 16 H -0.277 1.277 17 H -0.283 1.283 18 H -0.273 1.273 19 C 0.178 3.822 20 C -0.139 4.139 21 C -0.093 4.093 22 C 0.006 3.994 23 C 0.065 3.935 24 C -0.169 4.169 25 O -0.307 6.307 26 C 0.022 3.978 27 C 0.022 3.978 28 O -0.313 6.313 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.043 0.957 35 H 0.083 0.917 36 H 0.043 0.957 37 H 0.049 0.951 38 H 0.059 0.941 39 H 0.268 0.732 40 H 0.149 0.851 41 H 0.132 0.868 42 H 0.183 0.817 43 H 0.115 0.885 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.819 -1.371 7.286 10.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.158 4.158 3 C 0.018 3.982 4 H 0.124 0.876 5 O -0.280 6.280 6 C -0.066 4.066 7 C 0.286 3.714 8 O -0.407 6.407 9 N -0.253 5.253 10 C 0.098 3.902 11 C -0.583 4.583 12 H 0.081 0.919 13 C -0.133 4.133 14 N -0.523 5.523 15 Si 0.724 3.276 16 H -0.203 1.203 17 H -0.209 1.209 18 H -0.197 1.197 19 C 0.082 3.918 20 C -0.160 4.160 21 C -0.112 4.112 22 C -0.039 4.039 23 C 0.020 3.980 24 C -0.189 4.189 25 O -0.222 6.222 26 C -0.054 4.054 27 C -0.054 4.054 28 O -0.228 6.228 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.113 0.887 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.102 0.898 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.167 0.833 41 H 0.150 0.850 42 H 0.200 0.800 43 H 0.133 0.867 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.949 -1.361 7.833 10.559 hybrid contribution 0.191 1.106 -1.016 1.514 sum 7.140 -0.255 6.817 9.875 Atomic orbital electron populations 1.21675 0.94562 1.01646 1.02317 1.21723 0.97362 0.93111 1.03589 1.22105 0.90225 0.96721 0.89176 0.87573 1.87893 1.88219 1.20631 1.31219 1.22796 0.99981 0.81789 1.01989 1.21510 0.91761 0.76512 0.81608 1.90349 1.63653 1.46865 1.39805 1.46076 1.04179 1.61120 1.13896 1.20010 0.90710 0.97900 0.81603 1.21384 1.33533 0.94068 1.09327 0.91939 1.24887 0.95013 0.96579 0.96836 1.69907 1.33921 1.24737 1.23703 0.86504 0.77852 0.83103 0.80173 1.20292 1.20904 1.19746 1.17643 0.83390 0.97714 0.93045 1.20918 0.93514 1.04011 0.97520 1.20140 0.92341 1.02668 0.96043 1.18827 0.82530 1.08980 0.93529 1.18702 0.91394 1.03791 0.84106 1.21637 0.89592 1.05805 1.01901 1.86302 1.24108 1.78386 1.33359 1.23540 0.82646 0.99893 0.99367 1.23501 0.95748 0.99744 0.86385 1.86270 1.15013 1.78619 1.42883 0.92621 0.92342 0.92141 0.88717 0.91268 0.93867 0.89839 0.93859 0.93264 0.92344 0.92238 0.83299 0.85013 0.80038 0.86695 0.90912 0.91012 0.86759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.81 37.16 0.36 -1.69 16 2 C -0.12 -1.97 5.25 -26.73 -0.14 -2.11 16 3 C 0.08 1.46 1.70 -27.89 -0.05 1.41 16 4 H 0.11 2.05 6.96 -51.93 -0.36 1.69 16 5 O -0.36 -6.50 9.44 -55.00 -0.52 -7.01 16 6 C 0.03 0.47 10.81 101.05 1.09 1.57 16 7 C 0.50 10.42 6.87 -10.99 -0.08 10.34 16 8 O -0.53 -11.97 13.04 -14.23 -0.19 -12.16 16 9 N -0.53 -11.28 2.69 -114.72 -0.31 -11.59 16 10 C 0.22 4.79 4.01 -5.19 -0.02 4.77 16 11 C -0.54 -13.29 8.96 -34.44 -0.31 -13.60 16 12 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 13 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 14 N -0.89 -22.58 13.29 55.43 0.74 -21.84 16 15 Si 0.90 19.62 29.54 -169.99 -5.02 14.60 16 16 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 17 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 19 C 0.18 3.73 6.49 -83.66 -0.54 3.19 16 20 C -0.14 -2.70 9.15 -39.40 -0.36 -3.06 16 21 C -0.09 -1.63 9.95 -39.45 -0.39 -2.02 16 22 C 0.01 0.11 6.49 -39.13 -0.25 -0.14 16 23 C 0.07 1.23 6.49 -39.15 -0.25 0.97 16 24 C -0.17 -3.49 8.89 -39.24 -0.35 -3.84 16 25 O -0.31 -5.18 10.42 -32.89 -0.34 -5.52 16 26 C 0.02 0.25 7.26 37.40 0.27 0.52 16 27 C 0.02 0.25 7.26 37.40 0.27 0.52 16 28 O -0.31 -4.84 10.42 -33.19 -0.35 -5.19 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.80 7.83 -51.93 -0.41 0.39 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.09 1.61 5.52 -51.93 -0.29 1.32 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.04 0.60 8.09 -51.93 -0.42 0.18 16 35 H 0.08 1.05 8.14 -51.94 -0.42 0.62 16 36 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.05 1.13 6.35 -51.93 -0.33 0.80 16 38 H 0.06 1.28 4.33 -51.93 -0.22 1.05 16 39 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 40 H 0.15 2.97 6.30 -52.49 -0.33 2.63 16 41 H 0.13 2.01 8.06 -52.49 -0.42 1.58 16 42 H 0.18 4.04 4.73 -55.11 -0.26 3.78 16 43 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 46 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 372.55 15.07 5.61 5.61 Total: -1.00 -29.22 372.55 -7.61 -36.82 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -6.39 Total: 7.80 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: -0.84 Total: -1.52 kcal Atomic # 7 Polarization: -33.86 SS G_CDS: 0.43 Total: -33.44 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -1.39 Total: -29.88 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.22 -7.61 -36.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352050035.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.320 kcal (2) G-P(sol) polarization free energy of solvation -29.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds