Wall clock time and date at job start Tue Mar 31 2020 19:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47298 * 2 1 4 4 H 1.09000 * 109.46978 * 305.11502 * 3 2 1 5 5 O 1.42901 * 109.46932 * 65.11178 * 3 2 1 6 6 C 1.42895 * 114.00332 * 210.00142 * 5 3 2 7 7 C 1.50691 * 109.47037 * 185.11272 * 3 2 1 8 8 O 1.21301 * 120.00030 * 248.30868 * 7 3 2 9 9 N 1.34773 * 120.00129 * 68.31262 * 7 3 2 10 10 C 1.46496 * 120.00199 * 6.04077 * 9 7 3 11 11 C 1.50706 * 109.46982 * 86.48125 * 10 9 7 12 12 H 1.07999 * 119.99948 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00070 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99923 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00210 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47037 * 89.99940 * 15 13 11 17 17 H 1.48494 * 109.47220 * 210.00172 * 15 13 11 18 18 H 1.48508 * 109.46833 * 330.00432 * 15 13 11 19 19 C 1.40108 * 120.00017 * 186.04521 * 9 7 3 20 20 C 1.38847 * 120.01728 * 187.68612 * 19 9 7 21 21 C 1.38124 * 120.03582 * 179.77018 * 20 19 9 22 22 C 1.38714 * 120.16084 * 0.54816 * 21 20 19 23 23 C 1.38991 * 119.93431 * 359.63951 * 22 21 20 24 24 C 1.38650 * 119.88390 * 0.12798 * 23 22 21 25 25 O 1.36115 * 120.78297 * 180.26302 * 23 22 21 26 26 C 1.43165 * 116.73481 * 342.80644 * 25 23 22 27 27 C 1.53473 * 108.24269 * 46.19226 * 26 25 23 28 28 O 1.36208 * 119.31958 * 179.55551 * 22 21 20 29 29 H 1.08995 * 109.47399 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47302 * 299.99775 * 1 2 3 31 31 H 1.09006 * 109.47401 * 59.99728 * 1 2 3 32 32 H 1.09004 * 109.46669 * 240.00631 * 2 1 3 33 33 H 1.09000 * 109.47232 * 120.00693 * 2 1 3 34 34 H 1.09005 * 109.46696 * 59.99808 * 6 5 3 35 35 H 1.08989 * 109.47446 * 179.97438 * 6 5 3 36 36 H 1.08999 * 109.46710 * 300.00464 * 6 5 3 37 37 H 1.08997 * 109.47441 * 206.47947 * 10 9 7 38 38 H 1.09001 * 109.47404 * 326.48695 * 10 9 7 39 39 H 0.97001 * 119.99484 * 179.97438 * 14 13 11 40 40 H 1.07993 * 119.98466 * 0.05236 * 20 19 9 41 41 H 1.08001 * 119.92398 * 180.29366 * 21 20 19 42 42 H 1.07998 * 119.98965 * 179.97438 * 24 23 22 43 43 H 1.09003 * 109.71114 * 165.87208 * 26 25 23 44 44 H 1.09000 * 109.70988 * 286.50307 * 26 25 23 45 45 H 1.08993 * 109.71815 * 59.91565 * 27 26 25 46 46 H 1.09004 * 109.70852 * 180.55524 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6038 1.9821 -0.8406 5 8 1.6642 2.0806 1.2222 6 6 1.4579 3.4895 1.1028 7 6 3.5416 1.4443 -0.1266 8 8 4.2285 1.8042 0.8062 9 7 4.1214 1.0462 -1.2763 10 6 3.2943 0.7384 -2.4456 11 6 3.0315 2.0031 -3.2219 12 1 3.4401 2.9421 -2.8789 13 6 2.2703 1.9612 -4.3708 14 7 1.7732 0.8176 -4.7888 15 14 1.9452 3.5286 -5.3335 16 1 3.0147 3.7184 -6.3461 17 1 0.6301 3.4268 -6.0156 18 1 1.9324 4.6868 -4.4040 19 6 5.5153 0.9267 -1.3531 20 6 6.1244 0.6729 -2.5748 21 6 7.4988 0.5597 -2.6518 22 6 8.2738 0.6877 -1.5085 23 6 7.6667 0.9378 -0.2835 24 6 6.2873 1.0562 -0.2074 25 8 8.4108 1.0718 0.8484 26 6 9.7540 0.5790 0.7981 27 6 10.3970 1.0692 -0.5065 28 8 9.6270 0.5639 -1.6026 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 0.6625 3.6805 0.3824 35 1 1.1753 3.8988 2.0726 36 1 2.3783 3.9638 0.7621 37 1 3.8161 0.0234 -3.0817 38 1 2.3471 0.3098 -2.1180 39 1 1.2373 0.7883 -5.5969 40 1 5.5235 0.5685 -3.4661 41 1 7.9710 0.3670 -3.6038 42 1 5.8138 1.2502 0.7436 43 1 10.3171 0.9589 1.6506 44 1 9.7468 -0.5108 0.8176 45 1 10.3980 2.1588 -0.5292 46 1 11.4199 0.6985 -0.5740 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352050035.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:40 Heat of formation + Delta-G solvation = -124.444569 kcal Electronic energy + Delta-G solvation = -30337.497638 eV Core-core repulsion = 26193.354831 eV Total energy + Delta-G solvation = -4144.142807 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.37613 -41.60847 -39.28001 -38.21718 -37.98613 -36.82544 -34.62455 -34.41498 -31.90036 -31.55413 -29.52517 -29.32038 -28.36450 -26.97084 -25.69389 -24.99232 -23.93689 -23.06639 -21.88016 -20.76146 -19.47902 -18.94343 -18.77113 -18.37672 -17.93845 -17.37320 -17.04152 -16.56433 -16.46970 -16.33746 -15.86723 -15.79929 -15.56126 -15.32899 -15.12621 -14.92052 -14.56006 -14.41066 -14.33249 -14.08434 -13.63745 -13.51116 -13.30579 -13.16773 -12.95235 -12.82148 -12.66015 -12.44456 -12.42980 -12.16317 -11.98342 -11.91031 -11.80093 -11.65790 -11.57650 -11.23196 -10.61594 -10.52152 -10.05671 -9.48844 -8.57660 -8.20311 -6.37359 0.19141 0.31122 1.40672 1.43492 1.48974 1.54756 1.82636 2.11073 2.36058 2.39766 2.75997 2.81409 3.07639 3.32976 3.45698 3.74236 3.90591 3.97367 4.02989 4.09877 4.17482 4.28575 4.35667 4.41372 4.45067 4.48920 4.49575 4.59054 4.60839 4.63845 4.76844 4.79231 4.87897 5.00683 5.10892 5.13142 5.16353 5.21530 5.30235 5.41914 5.46514 5.65292 5.90044 5.93880 5.97175 6.03941 6.36470 6.47714 6.71683 7.07257 7.33598 8.82150 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010261 B = 0.004478 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2728.065123 B = 6251.309090 C = 8010.929302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.117 4.117 3 C 0.086 3.914 4 H 0.096 0.904 5 O -0.371 6.371 6 C 0.026 3.974 7 C 0.488 3.512 8 O -0.551 6.551 9 N -0.534 5.534 10 C 0.229 3.771 11 C -0.550 4.550 12 H 0.045 0.955 13 C 0.037 3.963 14 N -0.906 5.906 15 Si 0.948 3.052 16 H -0.277 1.277 17 H -0.276 1.276 18 H -0.275 1.275 19 C 0.154 3.846 20 C -0.147 4.147 21 C -0.088 4.088 22 C 0.014 3.986 23 C 0.065 3.935 24 C -0.187 4.187 25 O -0.326 6.326 26 C 0.012 3.988 27 C 0.016 3.984 28 O -0.318 6.318 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.113 0.887 36 H 0.023 0.977 37 H 0.038 0.962 38 H 0.063 0.937 39 H 0.271 0.729 40 H 0.140 0.860 41 H 0.158 0.842 42 H 0.164 0.836 43 H 0.155 0.845 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.993 -1.308 7.421 10.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.155 4.155 3 C 0.025 3.975 4 H 0.113 0.887 5 O -0.288 6.288 6 C -0.070 4.070 7 C 0.279 3.721 8 O -0.431 6.431 9 N -0.255 5.255 10 C 0.110 3.890 11 C -0.589 4.589 12 H 0.063 0.937 13 C -0.165 4.165 14 N -0.544 5.544 15 Si 0.774 3.226 16 H -0.203 1.203 17 H -0.201 1.201 18 H -0.200 1.200 19 C 0.058 3.942 20 C -0.168 4.168 21 C -0.107 4.107 22 C -0.032 4.032 23 C 0.019 3.981 24 C -0.207 4.207 25 O -0.241 6.241 26 C -0.062 4.062 27 C -0.059 4.059 28 O -0.233 6.233 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.131 0.869 36 H 0.042 0.958 37 H 0.056 0.944 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.157 0.843 41 H 0.175 0.825 42 H 0.181 0.819 43 H 0.172 0.828 44 H 0.099 0.901 45 H 0.093 0.907 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 8.146 -1.301 7.975 11.474 hybrid contribution 0.043 1.094 -0.965 1.460 sum 8.189 -0.207 7.010 10.782 Atomic orbital electron populations 1.21631 0.92567 1.02983 1.02259 1.21714 0.99009 0.91546 1.03218 1.22075 0.88386 0.97964 0.89113 0.88650 1.87876 1.88005 1.22021 1.30914 1.22997 0.99520 0.80373 1.04140 1.22051 0.92873 0.75970 0.81213 1.90340 1.64439 1.47939 1.40394 1.46045 1.04527 1.61256 1.13657 1.19769 0.90797 0.96777 0.81610 1.21433 1.33529 0.94055 1.09849 0.93673 1.25433 0.94804 0.98839 0.97413 1.69967 1.34360 1.25991 1.24130 0.85700 0.77872 0.80149 0.78877 1.20259 1.20100 1.19978 1.17878 0.83316 0.99151 0.93860 1.20873 0.94438 1.04867 0.96573 1.20388 0.91581 1.01399 0.97301 1.18846 0.83898 1.07559 0.92863 1.18699 0.91024 1.03038 0.85304 1.21484 0.90811 1.07403 1.01029 1.86274 1.26543 1.78587 1.32721 1.24016 0.80317 1.00632 1.01279 1.23934 0.97035 1.00173 0.84779 1.86264 1.13583 1.78655 1.44845 0.90610 0.91603 0.92899 0.89737 0.90868 0.92441 0.86892 0.95811 0.94365 0.91957 0.91975 0.84277 0.82458 0.81918 0.82795 0.90139 0.90742 0.82261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 9.81 71.98 0.71 -3.06 16 2 C -0.12 -3.87 5.25 30.59 0.16 -3.71 16 3 C 0.09 3.25 1.70 29.85 0.05 3.30 16 4 H 0.10 3.80 6.96 -2.39 -0.02 3.78 16 5 O -0.37 -13.34 9.44 -130.08 -1.23 -14.57 16 6 C 0.03 0.78 10.81 113.37 1.23 2.00 16 7 C 0.49 21.39 6.87 87.65 0.60 22.00 16 8 O -0.55 -26.16 13.04 15.81 0.21 -25.95 16 9 N -0.53 -23.72 2.69 -635.26 -1.71 -25.43 16 10 C 0.23 10.54 4.01 85.64 0.34 10.89 16 11 C -0.55 -27.53 8.96 25.60 0.23 -27.30 16 12 H 0.04 2.38 7.81 -2.91 -0.02 2.36 16 13 C 0.04 1.85 5.46 84.65 0.46 2.32 16 14 N -0.91 -46.40 13.29 21.45 0.28 -46.11 16 15 Si 0.95 40.19 29.54 68.60 2.03 42.22 16 16 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 17 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 18 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 19 C 0.15 6.69 6.49 38.09 0.25 6.94 16 20 C -0.15 -5.86 9.15 22.39 0.20 -5.65 16 21 C -0.09 -3.04 9.95 22.36 0.22 -2.81 16 22 C 0.01 0.48 6.49 22.56 0.15 0.62 16 23 C 0.07 2.45 6.49 22.55 0.15 2.59 16 24 C -0.19 -8.02 8.89 22.49 0.20 -7.82 16 25 O -0.33 -10.72 10.42 -82.63 -0.86 -11.58 16 26 C 0.01 0.24 7.26 72.14 0.52 0.77 16 27 C 0.02 0.30 7.26 72.14 0.52 0.82 16 28 O -0.32 -9.04 10.42 -83.70 -0.87 -9.92 16 29 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.06 1.70 7.83 -2.39 -0.02 1.68 16 31 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.08 2.94 5.52 -2.39 -0.01 2.93 16 33 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.06 1.55 8.09 -2.38 -0.02 1.53 16 35 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 36 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.04 1.84 6.35 -2.39 -0.02 1.82 16 38 H 0.06 2.82 4.33 -2.39 -0.01 2.81 16 39 H 0.27 13.18 8.31 -92.71 -0.77 12.41 16 40 H 0.14 5.76 6.30 -2.91 -0.02 5.74 16 41 H 0.16 4.53 8.06 -2.91 -0.02 4.51 16 42 H 0.16 7.64 4.73 -44.45 -0.21 7.43 16 43 H 0.15 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.16 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -64.23 372.55 4.65 -59.58 By element: Atomic # 1 Polarization: 29.06 SS G_CDS: 0.81 Total: 29.86 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: 5.99 Total: 1.90 kcal Atomic # 7 Polarization: -70.11 SS G_CDS: -1.43 Total: -71.54 kcal Atomic # 8 Polarization: -59.26 SS G_CDS: -2.75 Total: -62.02 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 2.03 Total: 42.22 kcal Total: -64.23 4.65 -59.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352050035.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.861 kcal (2) G-P(sol) polarization free energy of solvation -64.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds