Wall clock time and date at job start Tue Mar 31 2020 19:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47178 * 2 1 4 4 H 1.09001 * 109.46919 * 304.99883 * 3 2 1 5 5 C 1.50698 * 109.47291 * 184.99794 * 3 2 1 6 6 H 1.07992 * 120.00179 * 239.99684 * 5 3 2 7 7 C 1.37876 * 120.00025 * 59.99945 * 5 3 2 8 8 N 1.31517 * 119.99833 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00239 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46760 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47310 * 120.00009 * 9 7 5 12 12 H 1.48500 * 109.47120 * 239.99603 * 9 7 5 13 13 N 1.46503 * 109.47426 * 64.99574 * 3 2 1 14 14 C 1.34777 * 120.00027 * 275.00453 * 13 3 2 15 15 O 1.21279 * 119.99799 * 359.97438 * 14 13 3 16 16 C 1.50699 * 119.99939 * 179.97438 * 14 13 3 17 17 C 1.53004 * 109.47039 * 179.97438 * 16 14 13 18 18 C 1.53005 * 109.46767 * 180.02562 * 17 16 14 19 19 O 1.42904 * 109.46558 * 180.02562 * 18 17 16 20 20 C 1.35974 * 116.99349 * 180.02562 * 19 18 17 21 21 C 1.38690 * 119.99173 * 0.02562 * 20 19 18 22 22 C 1.38217 * 120.08725 * 179.75779 * 21 20 19 23 23 C 1.38536 * 120.09713 * 0.44624 * 22 21 20 24 24 C 1.39249 * 119.91732 * 359.55261 * 23 22 21 25 25 C 1.38534 * 119.88157 * 0.22500 * 24 23 22 26 26 O 1.36508 * 108.64735 * 180.25048 * 24 23 22 27 27 C 1.43979 * 105.49623 * 342.69903 * 26 24 23 28 28 O 1.36605 * 131.46210 * 179.85577 * 23 22 21 29 29 H 1.09003 * 109.47512 * 300.00381 * 1 2 3 30 30 H 1.09001 * 109.46947 * 59.99996 * 1 2 3 31 31 H 1.08998 * 109.46932 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47398 * 239.99663 * 2 1 3 33 33 H 1.08997 * 109.46930 * 119.99249 * 2 1 3 34 34 H 0.97006 * 119.99880 * 179.97438 * 8 7 5 35 35 H 0.96998 * 119.99774 * 94.99955 * 13 3 2 36 36 H 1.09007 * 109.46892 * 59.99943 * 16 14 13 37 37 H 1.08998 * 109.47196 * 299.99975 * 16 14 13 38 38 H 1.08993 * 109.47047 * 60.00278 * 17 16 14 39 39 H 1.08998 * 109.47202 * 300.00089 * 17 16 14 40 40 H 1.08993 * 109.47318 * 60.00190 * 18 17 16 41 41 H 1.08998 * 109.47124 * 299.99882 * 18 17 16 42 42 H 1.08003 * 119.95727 * 0.02562 * 21 20 19 43 43 H 1.08003 * 119.95727 * 180.33302 * 22 21 20 44 44 H 1.08001 * 120.00442 * 180.02562 * 25 24 23 45 45 H 1.09002 * 110.57307 * 268.58048 * 27 26 24 46 46 H 1.09001 * 110.56895 * 145.71437 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1471 1.8889 0.6523 7 6 4.1433 0.8784 -1.2279 8 7 3.4063 0.3366 -2.1728 9 14 6.0050 0.8800 -1.3810 10 1 6.5987 1.5453 -0.1935 11 1 6.4962 -0.5189 -1.4625 12 1 6.4001 1.6156 -2.6091 13 7 1.6524 2.0976 1.2518 14 6 0.4351 2.6645 1.3668 15 8 -0.3393 2.6327 0.4340 16 6 0.0362 3.3378 2.6547 17 6 -1.3826 3.8947 2.5208 18 6 -1.7873 4.5789 3.8281 19 8 -3.1127 5.0985 3.7032 20 6 -3.6276 5.7423 4.7845 21 6 -2.8715 5.8706 5.9401 22 6 -3.3911 6.5290 7.0387 23 6 -4.6720 7.0546 6.9919 24 6 -5.4331 6.9271 5.8328 25 6 -4.9085 6.2708 4.7313 26 8 -6.6426 7.5263 6.0367 27 6 -6.7685 7.6626 7.4644 28 8 -5.4055 7.7340 7.9227 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 3.8294 -0.0612 -2.9497 35 1 2.2719 2.1233 1.9977 36 1 0.7276 4.1532 2.8677 37 1 0.0672 2.6132 3.4683 38 1 -2.0742 3.0797 2.3076 39 1 -1.4132 4.6194 1.7072 40 1 -1.0957 5.3940 4.0409 41 1 -1.7567 3.8545 4.6420 42 1 -1.8736 5.4592 5.9801 43 1 -2.7983 6.6324 7.9356 44 1 -5.4969 6.1711 3.8312 45 1 -7.2705 6.7934 7.8895 46 1 -7.3056 8.5772 7.7159 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358078130.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:00 Heat of formation + Delta-G solvation = -121.685837 kcal Electronic energy + Delta-G solvation = -27545.045057 eV Core-core repulsion = 23401.021878 eV Total energy + Delta-G solvation = -4144.023179 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.50394 -40.06939 -39.07454 -36.91263 -36.61950 -35.22378 -33.60261 -32.36893 -31.13413 -30.84734 -29.59501 -27.69933 -26.46914 -26.13403 -23.71041 -23.16099 -22.79783 -21.71338 -20.11689 -19.34018 -18.95150 -18.26848 -17.82662 -17.11442 -17.07431 -16.55440 -15.96660 -15.78085 -15.35123 -15.08276 -15.04669 -14.82336 -14.23471 -14.22455 -13.77175 -13.42976 -13.39319 -13.27708 -13.01121 -12.81530 -12.74684 -12.30694 -12.06095 -11.70126 -11.66087 -11.40368 -11.26488 -11.05680 -10.96933 -10.89939 -10.83357 -10.51319 -10.32175 -10.17589 -9.63966 -9.14273 -9.06371 -8.98443 -8.51423 -8.13705 -7.82480 -6.13887 -4.23351 0.74564 0.88231 2.21239 2.82821 3.18413 3.21998 3.26123 3.30203 3.32348 3.40271 4.10823 4.11686 4.26908 4.36780 4.45328 4.50233 4.63445 4.77416 4.83593 4.88698 4.99801 5.11733 5.17212 5.18734 5.34735 5.41818 5.52293 5.66522 5.71704 5.79757 5.86018 5.89720 6.07292 6.27661 6.38606 6.44955 6.65433 6.67234 7.02812 7.08132 7.19342 7.36298 7.45606 7.60976 7.72454 7.89366 8.17435 8.66670 8.76883 9.14114 9.44415 10.91408 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.034076 B = 0.001610 C = 0.001567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.492925 B =17385.544055 C =17859.199814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.269 3.731 4 H 0.049 0.951 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.710 5.710 14 C 0.500 3.500 15 O -0.548 6.548 16 C -0.140 4.140 17 C -0.102 4.102 18 C 0.059 3.941 19 O -0.305 6.305 20 C 0.152 3.848 21 C -0.202 4.202 22 C -0.057 4.057 23 C -0.014 4.014 24 C 0.073 3.927 25 C -0.138 4.138 26 O -0.307 6.307 27 C 0.214 3.786 28 O -0.310 6.310 29 H 0.038 0.962 30 H 0.049 0.951 31 H 0.022 0.978 32 H 0.099 0.901 33 H 0.030 0.970 34 H 0.264 0.736 35 H 0.388 0.612 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.145 0.855 43 H 0.138 0.862 44 H 0.145 0.855 45 H 0.084 0.916 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.959 11.405 20.517 27.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.167 3.833 4 H 0.067 0.933 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.357 5.357 14 C 0.285 3.715 15 O -0.427 6.427 16 C -0.180 4.180 17 C -0.140 4.140 18 C -0.016 4.016 19 O -0.218 6.218 20 C 0.105 3.895 21 C -0.221 4.221 22 C -0.075 4.075 23 C -0.058 4.058 24 C 0.028 3.972 25 C -0.157 4.157 26 O -0.223 6.223 27 C 0.102 3.898 28 O -0.227 6.227 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.041 0.959 32 H 0.117 0.883 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.220 0.780 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.163 0.837 43 H 0.156 0.844 44 H 0.163 0.837 45 H 0.102 0.898 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -15.674 11.419 19.495 27.497 hybrid contribution 1.284 0.004 0.576 1.407 sum -14.390 11.423 20.071 27.210 Atomic orbital electron populations 1.21837 0.98337 0.98002 1.01239 1.21932 0.92619 0.99856 1.02235 1.18784 0.94171 0.89187 0.81140 0.93331 1.21272 0.90772 1.38929 1.06263 0.92070 1.24895 0.98588 0.94831 0.95419 1.69907 1.35027 1.37636 1.09339 0.86410 0.84909 0.77764 0.78102 1.19777 1.20887 1.20898 1.46501 1.14684 1.56028 1.18518 1.20234 0.82813 0.79486 0.89011 1.90685 1.51422 1.59913 1.40698 1.21559 0.97114 1.01356 0.98000 1.21221 0.95873 1.01370 0.95516 1.23006 0.80795 0.97740 1.00053 1.86115 1.32271 1.68710 1.34684 1.18375 0.91731 0.92631 0.86728 1.21064 1.01781 1.06358 0.92856 1.19808 0.91855 0.96449 0.99433 1.19644 0.95813 1.01595 0.88756 1.19291 0.86038 0.96731 0.95097 1.19015 0.94956 1.02866 0.98853 1.87371 1.34314 1.75456 1.25131 1.25621 0.83993 1.04033 0.76142 1.87367 1.18443 1.71172 1.45704 0.94287 0.93146 0.95907 0.88334 0.95098 0.92617 0.78009 0.89232 0.89323 0.89931 0.89884 0.91584 0.91633 0.83735 0.84373 0.83717 0.89846 0.85138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.52 37.16 0.32 -2.69 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.19 16 3 C 0.27 6.59 2.24 -69.08 -0.15 6.44 16 4 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 5 C -0.53 -13.80 8.73 -34.44 -0.30 -14.10 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -24.43 11.29 55.43 0.63 -23.81 16 9 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 10 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 N -0.71 -13.84 5.02 -54.93 -0.28 -14.12 16 14 C 0.50 9.07 6.40 -10.99 -0.07 9.00 16 15 O -0.55 -12.11 13.12 5.56 0.07 -12.04 16 16 C -0.14 -1.67 5.70 -27.88 -0.16 -1.83 16 17 C -0.10 -1.21 4.87 -26.73 -0.13 -1.34 16 18 C 0.06 0.54 4.74 37.16 0.18 0.72 16 19 O -0.30 -3.42 10.14 -19.66 -0.20 -3.62 16 20 C 0.15 1.56 6.68 -39.26 -0.26 1.30 16 21 C -0.20 -1.71 9.03 -39.42 -0.36 -2.07 16 22 C -0.06 -0.48 10.05 -39.48 -0.40 -0.88 16 23 C -0.01 -0.14 7.15 -39.10 -0.28 -0.42 16 24 C 0.07 0.77 7.15 -39.10 -0.28 0.49 16 25 C -0.14 -1.44 10.00 -39.32 -0.39 -1.83 16 26 O -0.31 -3.01 11.40 -45.72 -0.52 -3.53 16 27 C 0.21 1.40 8.89 101.05 0.90 2.30 16 28 O -0.31 -2.92 11.41 -46.03 -0.53 -3.45 16 29 H 0.04 0.82 5.65 -51.93 -0.29 0.52 16 30 H 0.05 1.19 7.85 -51.93 -0.41 0.78 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 33 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 35 H 0.39 6.46 8.54 -40.82 -0.35 6.11 16 36 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 39 H 0.08 1.12 8.10 -51.93 -0.42 0.70 16 40 H 0.07 0.50 7.65 -51.93 -0.40 0.10 16 41 H 0.07 0.49 7.66 -51.93 -0.40 0.09 16 42 H 0.15 0.91 6.29 -52.48 -0.33 0.58 16 43 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 44 H 0.15 1.40 8.06 -52.49 -0.42 0.97 16 45 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.13 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 378.50 15.07 5.70 5.70 Total: -1.00 -32.04 378.50 -8.41 -40.45 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -6.64 Total: 5.57 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -1.63 Total: -6.46 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.35 Total: -37.92 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -1.17 Total: -22.63 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.04 -8.41 -40.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358078130.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.235 kcal (2) G-P(sol) polarization free energy of solvation -32.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds