Wall clock time and date at job start Tue Mar 31 2020 19:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47178 * 2 1 4 4 H 1.09001 * 109.46919 * 304.99883 * 3 2 1 5 5 C 1.50698 * 109.47291 * 184.99794 * 3 2 1 6 6 H 1.07992 * 120.00179 * 239.99684 * 5 3 2 7 7 C 1.37876 * 120.00025 * 59.99945 * 5 3 2 8 8 N 1.31517 * 119.99833 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00239 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46760 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47310 * 120.00009 * 9 7 5 12 12 H 1.48500 * 109.47120 * 239.99603 * 9 7 5 13 13 N 1.46503 * 109.47426 * 64.99574 * 3 2 1 14 14 C 1.34777 * 120.00027 * 275.00453 * 13 3 2 15 15 O 1.21279 * 119.99799 * 359.97438 * 14 13 3 16 16 C 1.50699 * 119.99939 * 179.97438 * 14 13 3 17 17 C 1.53004 * 109.47039 * 179.97438 * 16 14 13 18 18 C 1.53005 * 109.46767 * 180.02562 * 17 16 14 19 19 O 1.42904 * 109.46558 * 180.02562 * 18 17 16 20 20 C 1.35974 * 116.99349 * 180.02562 * 19 18 17 21 21 C 1.38690 * 119.99173 * 0.02562 * 20 19 18 22 22 C 1.38217 * 120.08725 * 179.75779 * 21 20 19 23 23 C 1.38536 * 120.09713 * 0.44624 * 22 21 20 24 24 C 1.39249 * 119.91732 * 359.55261 * 23 22 21 25 25 C 1.38534 * 119.88157 * 0.22500 * 24 23 22 26 26 O 1.36508 * 108.64735 * 180.25048 * 24 23 22 27 27 C 1.43979 * 105.49623 * 342.69903 * 26 24 23 28 28 O 1.36605 * 131.46210 * 179.85577 * 23 22 21 29 29 H 1.09003 * 109.47512 * 300.00381 * 1 2 3 30 30 H 1.09001 * 109.46947 * 59.99996 * 1 2 3 31 31 H 1.08998 * 109.46932 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47398 * 239.99663 * 2 1 3 33 33 H 1.08997 * 109.46930 * 119.99249 * 2 1 3 34 34 H 0.97006 * 119.99880 * 179.97438 * 8 7 5 35 35 H 0.96998 * 119.99774 * 94.99955 * 13 3 2 36 36 H 1.09007 * 109.46892 * 59.99943 * 16 14 13 37 37 H 1.08998 * 109.47196 * 299.99975 * 16 14 13 38 38 H 1.08993 * 109.47047 * 60.00278 * 17 16 14 39 39 H 1.08998 * 109.47202 * 300.00089 * 17 16 14 40 40 H 1.08993 * 109.47318 * 60.00190 * 18 17 16 41 41 H 1.08998 * 109.47124 * 299.99882 * 18 17 16 42 42 H 1.08003 * 119.95727 * 0.02562 * 21 20 19 43 43 H 1.08003 * 119.95727 * 180.33302 * 22 21 20 44 44 H 1.08001 * 120.00442 * 180.02562 * 25 24 23 45 45 H 1.09002 * 110.57307 * 268.58048 * 27 26 24 46 46 H 1.09001 * 110.56895 * 145.71437 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1471 1.8889 0.6523 7 6 4.1433 0.8784 -1.2279 8 7 3.4063 0.3366 -2.1728 9 14 6.0050 0.8800 -1.3810 10 1 6.5987 1.5453 -0.1935 11 1 6.4962 -0.5189 -1.4625 12 1 6.4001 1.6156 -2.6091 13 7 1.6524 2.0976 1.2518 14 6 0.4351 2.6645 1.3668 15 8 -0.3393 2.6327 0.4340 16 6 0.0362 3.3378 2.6547 17 6 -1.3826 3.8947 2.5208 18 6 -1.7873 4.5789 3.8281 19 8 -3.1127 5.0985 3.7032 20 6 -3.6276 5.7423 4.7845 21 6 -2.8715 5.8706 5.9401 22 6 -3.3911 6.5290 7.0387 23 6 -4.6720 7.0546 6.9919 24 6 -5.4331 6.9271 5.8328 25 6 -4.9085 6.2708 4.7313 26 8 -6.6426 7.5263 6.0367 27 6 -6.7685 7.6626 7.4644 28 8 -5.4055 7.7340 7.9227 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 3.8294 -0.0612 -2.9497 35 1 2.2719 2.1233 1.9977 36 1 0.7276 4.1532 2.8677 37 1 0.0672 2.6132 3.4683 38 1 -2.0742 3.0797 2.3076 39 1 -1.4132 4.6194 1.7072 40 1 -1.0957 5.3940 4.0409 41 1 -1.7567 3.8545 4.6420 42 1 -1.8736 5.4592 5.9801 43 1 -2.7983 6.6324 7.9356 44 1 -5.4969 6.1711 3.8312 45 1 -7.2705 6.7934 7.8895 46 1 -7.3056 8.5772 7.7159 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358078130.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:59 Heat of formation + Delta-G solvation = -142.887863 kcal Electronic energy + Delta-G solvation = -27545.964446 eV Core-core repulsion = 23401.021878 eV Total energy + Delta-G solvation = -4144.942568 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.13974 -40.88091 -40.51646 -37.64313 -37.28015 -36.95547 -34.66428 -34.23141 -32.72180 -31.72402 -30.29983 -29.21961 -27.79014 -26.68550 -25.07139 -24.28594 -23.70915 -22.69928 -21.67483 -20.97443 -19.73705 -18.90435 -18.77935 -18.42279 -17.75941 -17.41266 -17.29540 -17.10121 -16.62721 -16.34562 -16.04182 -15.82446 -15.47816 -15.00497 -14.89079 -14.64239 -14.59881 -14.04821 -13.95620 -13.93656 -13.78302 -13.54914 -13.32962 -13.21395 -13.08355 -12.78173 -12.69952 -12.50692 -12.46126 -12.12650 -12.01278 -11.78812 -11.72689 -11.55489 -11.17419 -11.00869 -10.61500 -10.45848 -9.84131 -9.55074 -8.82009 -8.14262 -6.31373 0.06400 0.18410 1.44820 1.46337 1.56741 1.57877 1.97739 2.15727 2.39557 2.52455 2.60516 2.88757 3.15514 3.44847 3.78869 3.81134 3.91507 4.01262 4.01510 4.06846 4.17659 4.28573 4.38151 4.47766 4.50972 4.53579 4.55244 4.59942 4.72810 4.74675 4.84143 5.01717 5.06398 5.09724 5.14714 5.18759 5.24260 5.28755 5.34631 5.47030 5.59517 5.69190 5.83475 5.98196 6.01683 6.20873 6.38824 6.78722 7.09374 7.36979 7.70949 8.91133 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.034076 B = 0.001610 C = 0.001567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.492925 B =17385.544055 C =17859.199814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.276 3.724 4 H -0.005 1.005 5 C -0.545 4.545 6 H 0.073 0.927 7 C 0.013 3.987 8 N -0.916 5.916 9 Si 0.969 3.031 10 H -0.259 1.259 11 H -0.280 1.280 12 H -0.286 1.286 13 N -0.707 5.707 14 C 0.491 3.509 15 O -0.595 6.595 16 C -0.123 4.123 17 C -0.098 4.098 18 C 0.061 3.939 19 O -0.328 6.328 20 C 0.139 3.861 21 C -0.192 4.192 22 C -0.055 4.055 23 C -0.026 4.026 24 C 0.057 3.943 25 C -0.156 4.156 26 O -0.326 6.326 27 C 0.205 3.795 28 O -0.323 6.323 29 H 0.048 0.952 30 H 0.022 0.978 31 H 0.043 0.957 32 H 0.068 0.932 33 H 0.042 0.958 34 H 0.263 0.737 35 H 0.405 0.595 36 H 0.122 0.878 37 H 0.125 0.875 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.174 0.826 43 H 0.164 0.836 44 H 0.139 0.861 45 H 0.104 0.896 46 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.645 11.894 23.924 30.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.172 3.828 4 H 0.012 0.988 5 C -0.583 4.583 6 H 0.092 0.908 7 C -0.187 4.187 8 N -0.555 5.555 9 Si 0.794 3.206 10 H -0.182 1.182 11 H -0.206 1.206 12 H -0.213 1.213 13 N -0.357 5.357 14 C 0.279 3.721 15 O -0.476 6.476 16 C -0.163 4.163 17 C -0.137 4.137 18 C -0.013 4.013 19 O -0.242 6.242 20 C 0.093 3.907 21 C -0.211 4.211 22 C -0.074 4.074 23 C -0.070 4.070 24 C 0.012 3.988 25 C -0.175 4.175 26 O -0.242 6.242 27 C 0.095 3.905 28 O -0.240 6.240 29 H 0.067 0.933 30 H 0.041 0.959 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.240 0.760 36 H 0.140 0.860 37 H 0.143 0.857 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.191 0.809 43 H 0.182 0.818 44 H 0.157 0.843 45 H 0.121 0.879 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -14.361 11.925 22.957 29.589 hybrid contribution 0.778 -0.112 -0.491 0.927 sum -13.582 11.813 22.467 28.789 Atomic orbital electron populations 1.21675 0.97014 0.99006 1.00309 1.21779 0.93703 0.99327 1.01210 1.18328 0.93517 0.89143 0.81826 0.98755 1.21642 0.91568 1.38544 1.06563 0.90842 1.25786 1.03225 0.94527 0.95155 1.70068 1.36953 1.38569 1.09918 0.85337 0.79299 0.77732 0.78187 1.18242 1.20608 1.21270 1.46262 1.15884 1.56154 1.17371 1.21368 0.81511 0.78486 0.90706 1.90676 1.52574 1.61337 1.43059 1.21516 0.97345 1.02581 0.94825 1.21111 0.95657 1.00279 0.96626 1.23038 0.80486 0.98988 0.98789 1.86071 1.33340 1.69186 1.35587 1.18493 0.91879 0.93080 0.87228 1.21365 1.02560 1.05404 0.91746 1.20177 0.91397 0.95469 1.00345 1.19954 0.96508 1.01897 0.88685 1.19443 0.86597 0.97257 0.95487 1.19136 0.95635 1.03748 0.98987 1.87333 1.34273 1.75509 1.27104 1.26111 0.83193 1.06584 0.74654 1.87333 1.19591 1.71237 1.45830 0.93349 0.95898 0.93791 0.91355 0.93907 0.92739 0.75975 0.85967 0.85666 0.92114 0.92408 0.89185 0.88967 0.80873 0.81809 0.84281 0.87885 0.82158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.46 8.52 71.98 0.61 -4.85 16 2 C -0.12 -5.88 5.45 30.59 0.17 -5.71 16 3 C 0.28 13.78 2.24 44.24 0.10 13.88 16 4 H -0.01 -0.33 7.58 -2.39 -0.02 -0.35 16 5 C -0.54 -28.13 8.73 25.60 0.22 -27.91 16 6 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 7 C 0.01 0.68 5.29 84.65 0.45 1.13 16 8 N -0.92 -52.24 11.29 21.45 0.24 -52.00 16 9 Si 0.97 41.48 29.54 68.60 2.03 43.50 16 10 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 11 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 12 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 13 N -0.71 -26.96 5.02 -446.09 -2.24 -29.20 16 14 C 0.49 17.44 6.40 87.66 0.56 18.00 16 15 O -0.59 -27.03 13.12 -3.03 -0.04 -27.07 16 16 C -0.12 -2.55 5.70 29.85 0.17 -2.38 16 17 C -0.10 -2.20 4.87 30.60 0.15 -2.05 16 18 C 0.06 0.93 4.74 71.98 0.34 1.28 16 19 O -0.33 -6.99 10.14 -93.26 -0.95 -7.94 16 20 C 0.14 2.70 6.68 22.48 0.15 2.85 16 21 C -0.19 -2.69 9.03 22.37 0.20 -2.49 16 22 C -0.06 -0.80 10.05 22.34 0.22 -0.57 16 23 C -0.03 -0.50 7.15 22.58 0.16 -0.34 16 24 C 0.06 1.19 7.15 22.58 0.16 1.36 16 25 C -0.16 -3.31 10.00 22.44 0.22 -3.09 16 26 O -0.33 -6.36 11.40 -76.14 -0.87 -7.23 16 27 C 0.21 2.43 8.89 113.37 1.01 3.44 16 28 O -0.32 -5.65 11.41 -77.28 -0.88 -6.54 16 29 H 0.05 2.03 5.65 -2.39 -0.01 2.02 16 30 H 0.02 1.10 7.85 -2.39 -0.02 1.08 16 31 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.07 3.75 5.95 -2.39 -0.01 3.74 16 33 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.26 14.24 8.31 -92.70 -0.77 13.47 16 35 H 0.41 12.53 8.54 -92.71 -0.79 11.73 16 36 H 0.12 1.84 8.14 -2.38 -0.02 1.82 16 37 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.06 1.61 8.10 -2.39 -0.02 1.59 16 39 H 0.06 1.56 8.10 -2.39 -0.02 1.55 16 40 H 0.09 0.97 7.65 -2.39 -0.02 0.95 16 41 H 0.09 0.95 7.66 -2.39 -0.02 0.93 16 42 H 0.17 1.33 6.29 -2.91 -0.02 1.31 16 43 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 44 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 45 H 0.10 0.77 8.14 -2.39 -0.02 0.76 16 46 H 0.16 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -74.17 378.50 2.41 -71.76 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: 0.21 Total: 22.15 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: 4.90 Total: -7.45 kcal Atomic # 7 Polarization: -79.20 SS G_CDS: -2.00 Total: -81.20 kcal Atomic # 8 Polarization: -46.04 SS G_CDS: -2.73 Total: -48.77 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.50 kcal Total: -74.17 2.41 -71.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358078130.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.130 kcal (2) G-P(sol) polarization free energy of solvation -74.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds