Wall clock time and date at job start Tue Mar 31 2020 19:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.07998 * 120.00113 * 114.30626 * 5 3 2 7 7 C 1.37885 * 120.00206 * 294.30516 * 5 3 2 8 8 N 1.31513 * 119.99776 * 153.95278 * 7 5 3 9 9 Si 1.86800 * 119.99811 * 333.95909 * 7 5 3 10 10 H 1.48501 * 109.46792 * 180.02562 * 9 7 5 11 11 H 1.48504 * 109.46850 * 299.99560 * 9 7 5 12 12 H 1.48492 * 109.47278 * 59.99696 * 9 7 5 13 13 N 1.46491 * 109.47275 * 294.27990 * 3 2 1 14 14 C 1.34781 * 119.99991 * 84.99959 * 13 3 2 15 15 O 1.21283 * 120.00070 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99955 * 179.97438 * 14 13 3 17 17 C 1.53002 * 109.46981 * 180.02562 * 16 14 13 18 18 C 1.52995 * 109.46939 * 180.02562 * 17 16 14 19 19 O 1.42907 * 109.46999 * 180.02562 * 18 17 16 20 20 C 1.35976 * 116.99892 * 179.97438 * 19 18 17 21 21 C 1.38700 * 119.98922 * 359.97438 * 20 19 18 22 22 C 1.38220 * 120.08614 * 179.97438 * 21 20 19 23 23 C 1.38523 * 120.09611 * 0.02562 * 22 21 20 24 24 C 1.39257 * 119.92401 * 0.02562 * 23 22 21 25 25 C 1.38533 * 119.87664 * 359.70193 * 24 23 22 26 26 O 1.36499 * 108.64623 * 179.97438 * 24 23 22 27 27 C 1.43977 * 105.50377 * 342.70159 * 26 24 23 28 28 O 1.36608 * 131.45992 * 179.97438 * 23 22 21 29 29 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 30 30 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 32 32 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 33 33 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 34 34 H 0.96996 * 120.00478 * 354.97061 * 8 7 5 35 35 H 0.97000 * 120.00810 * 264.99777 * 13 3 2 36 36 H 1.08999 * 109.47161 * 300.00319 * 16 14 13 37 37 H 1.08996 * 109.46861 * 60.00556 * 16 14 13 38 38 H 1.08999 * 109.47408 * 300.00136 * 17 16 14 39 39 H 1.08999 * 109.46846 * 60.00007 * 17 16 14 40 40 H 1.09010 * 109.47132 * 299.99658 * 18 17 16 41 41 H 1.08999 * 109.47677 * 60.00110 * 18 17 16 42 42 H 1.08001 * 119.95450 * 0.02562 * 21 20 19 43 43 H 1.08003 * 119.94450 * 180.02562 * 22 21 20 44 44 H 1.07994 * 120.00686 * 180.31419 * 25 24 23 45 45 H 1.08999 * 110.57205 * 268.58311 * 27 26 24 46 46 H 1.09001 * 110.57400 * 145.71292 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1585 1.8023 -0.6685 7 6 4.1236 0.9911 1.3056 8 7 5.3469 0.5087 1.2833 9 14 3.1763 1.0612 2.9141 10 1 4.0195 0.5178 4.0091 11 1 2.8198 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3341 2.6307 -0.4672 16 6 0.0681 3.3275 -2.6859 17 6 -1.3523 3.8846 -2.5713 18 6 -1.7415 4.5631 -3.8862 19 8 -3.0679 5.0840 -3.7789 20 6 -3.5701 5.7232 -4.8690 21 6 -2.8005 5.8459 -6.0164 22 6 -3.3091 6.4948 -7.1257 23 6 -4.5886 7.0249 -7.0945 24 6 -5.3627 6.9039 -5.9433 25 6 -4.8529 6.2482 -4.8346 26 8 -6.5696 7.5022 -6.1642 27 6 -6.3762 8.3456 -7.3149 28 8 -5.3112 7.6999 -8.0371 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 5.8117 0.4042 0.4384 35 1 2.2954 2.1150 -1.9977 36 1 0.7620 4.1421 -2.8933 37 1 0.1091 2.6000 -3.4965 38 1 -2.0464 3.0703 -2.3637 39 1 -1.3928 4.6121 -1.7606 40 1 -1.0474 5.3775 -4.0942 41 1 -1.7010 3.8353 -4.6966 42 1 -1.8029 5.4331 -6.0433 43 1 -2.7081 6.5886 -8.0181 44 1 -5.4534 6.1487 -3.9425 45 1 -6.0783 9.3485 -7.0090 46 1 -7.2823 8.3820 -7.9198 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358078141.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:04 Heat of formation + Delta-G solvation = -122.202027 kcal Electronic energy + Delta-G solvation = -27621.107480 eV Core-core repulsion = 23477.061917 eV Total energy + Delta-G solvation = -4144.045563 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.53362 -40.11706 -39.25801 -36.95760 -36.64864 -35.41493 -33.70286 -32.46816 -31.46004 -31.03821 -29.63939 -27.85419 -26.61892 -26.16262 -23.69574 -23.06821 -22.41174 -21.82617 -20.30451 -19.52923 -19.02124 -18.29616 -17.89529 -17.72621 -17.14666 -16.62003 -16.34136 -15.96460 -15.43522 -15.28086 -15.05684 -14.85452 -14.25916 -14.02253 -13.66492 -13.44363 -13.42769 -13.32088 -13.12437 -12.99817 -12.70538 -12.49327 -12.37858 -12.07535 -11.83219 -11.74455 -11.53795 -11.11809 -10.97353 -10.80409 -10.70909 -10.55834 -10.43978 -9.87485 -9.80272 -9.24384 -9.17601 -9.14939 -8.27276 -8.17112 -8.09604 -6.63189 -4.22356 0.71241 0.84906 2.17707 2.78931 3.15132 3.22173 3.23085 3.39975 3.45027 3.60553 4.00886 4.07925 4.24536 4.41815 4.42680 4.47292 4.59467 4.70870 4.79724 4.82035 4.91459 5.05958 5.06799 5.13240 5.25755 5.35489 5.43765 5.63084 5.66695 5.69098 5.82356 5.85693 5.98537 6.06459 6.09072 6.19281 6.27726 6.63908 6.68787 6.79023 6.96040 7.03479 7.04454 7.35635 7.41299 7.66987 8.22342 8.47270 8.68905 8.97737 9.42416 10.74518 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.034589 B = 0.001664 C = 0.001635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.312519 B =16824.990550 C =17119.196001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.131 4.131 3 C 0.250 3.750 4 H 0.040 0.960 5 C -0.630 4.630 6 H 0.062 0.938 7 C 0.049 3.951 8 N -0.886 5.886 9 Si 1.030 2.970 10 H -0.283 1.283 11 H -0.281 1.281 12 H -0.273 1.273 13 N -0.703 5.703 14 C 0.500 3.500 15 O -0.550 6.550 16 C -0.140 4.140 17 C -0.102 4.102 18 C 0.059 3.941 19 O -0.305 6.305 20 C 0.151 3.849 21 C -0.202 4.202 22 C -0.057 4.057 23 C -0.014 4.014 24 C 0.073 3.927 25 C -0.138 4.138 26 O -0.307 6.307 27 C 0.214 3.786 28 O -0.310 6.310 29 H 0.048 0.952 30 H 0.029 0.971 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.062 0.938 34 H 0.271 0.729 35 H 0.392 0.608 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.145 0.855 43 H 0.139 0.861 44 H 0.145 0.855 45 H 0.084 0.916 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.724 13.063 -18.835 29.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.170 4.170 3 C 0.146 3.854 4 H 0.058 0.942 5 C -0.667 4.667 6 H 0.080 0.920 7 C -0.160 4.160 8 N -0.517 5.517 9 Si 0.856 3.144 10 H -0.209 1.209 11 H -0.207 1.207 12 H -0.199 1.199 13 N -0.350 5.350 14 C 0.285 3.715 15 O -0.429 6.429 16 C -0.180 4.180 17 C -0.140 4.140 18 C -0.016 4.016 19 O -0.218 6.218 20 C 0.105 3.895 21 C -0.221 4.221 22 C -0.075 4.075 23 C -0.058 4.058 24 C 0.029 3.971 25 C -0.157 4.157 26 O -0.223 6.223 27 C 0.102 3.898 28 O -0.227 6.227 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.225 0.775 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.162 0.838 43 H 0.156 0.844 44 H 0.163 0.837 45 H 0.102 0.898 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -19.380 12.702 -16.458 28.421 hybrid contribution 0.292 0.479 -2.375 2.441 sum -19.088 13.181 -18.833 29.879 Atomic orbital electron populations 1.21891 0.97401 0.98825 1.01971 1.22228 0.93681 0.99776 1.01330 1.19000 0.95717 0.88469 0.82179 0.94215 1.21979 0.89776 1.50103 1.04829 0.91998 1.25611 0.96605 0.91656 1.02112 1.70873 1.13908 1.36403 1.30545 0.84221 0.76045 0.77646 0.76439 1.20864 1.20679 1.19917 1.46277 1.14572 1.56051 1.18130 1.20320 0.82683 0.79314 0.89143 1.90677 1.50718 1.59940 1.41573 1.21546 0.97298 1.01466 0.97681 1.21218 0.95790 1.01442 0.95533 1.22994 0.80863 0.97771 0.99978 1.86108 1.32327 1.68817 1.34552 1.18369 0.91997 0.92562 0.86581 1.21065 1.01840 1.06253 0.92895 1.19811 0.90820 0.97616 0.99297 1.19646 0.94724 1.03683 0.87704 1.19291 0.84379 0.98769 0.94693 1.19004 0.94553 1.04329 0.97793 1.87368 1.28247 1.58658 1.47989 1.25626 0.91161 0.92391 0.80610 1.87370 1.40428 1.64405 1.30462 0.93268 0.95158 0.93017 0.93238 0.91929 0.91893 0.77509 0.89067 0.89178 0.89913 0.89847 0.91568 0.91587 0.83750 0.84352 0.83724 0.89827 0.85114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 8.53 37.16 0.32 -2.55 16 2 C -0.13 -2.89 5.37 -26.73 -0.14 -3.03 16 3 C 0.25 5.81 1.84 -69.09 -0.13 5.69 16 4 H 0.04 1.02 6.12 -51.93 -0.32 0.70 16 5 C -0.63 -16.62 8.92 -34.44 -0.31 -16.92 16 6 H 0.06 1.70 7.96 -52.49 -0.42 1.28 16 7 C 0.05 1.34 5.15 -17.82 -0.09 1.25 16 8 N -0.89 -25.79 13.70 55.43 0.76 -25.03 16 9 Si 1.03 24.77 26.56 -169.99 -4.51 20.26 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.27 -6.26 6.34 56.52 0.36 -5.90 16 13 N -0.70 -13.32 5.03 -54.93 -0.28 -13.60 16 14 C 0.50 8.66 6.43 -10.98 -0.07 8.59 16 15 O -0.55 -11.44 13.13 5.55 0.07 -11.36 16 16 C -0.14 -1.59 5.70 -27.88 -0.16 -1.75 16 17 C -0.10 -1.15 4.87 -26.73 -0.13 -1.28 16 18 C 0.06 0.52 4.74 37.16 0.18 0.69 16 19 O -0.30 -3.30 10.14 -19.66 -0.20 -3.50 16 20 C 0.15 1.51 6.68 -39.26 -0.26 1.25 16 21 C -0.20 -1.66 9.03 -39.42 -0.36 -2.02 16 22 C -0.06 -0.47 10.05 -39.48 -0.40 -0.87 16 23 C -0.01 -0.13 7.15 -39.10 -0.28 -0.41 16 24 C 0.07 0.76 7.15 -39.09 -0.28 0.48 16 25 C -0.14 -1.40 10.00 -39.32 -0.39 -1.80 16 26 O -0.31 -2.94 11.40 -45.69 -0.52 -3.46 16 27 C 0.21 1.36 8.89 101.05 0.90 2.26 16 28 O -0.31 -2.87 11.41 -46.05 -0.53 -3.39 16 29 H 0.05 0.95 5.63 -51.93 -0.29 0.66 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 1.09 7.89 -51.93 -0.41 0.68 16 32 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.06 1.46 5.77 -51.93 -0.30 1.16 16 34 H 0.27 7.79 8.73 -40.82 -0.36 7.43 16 35 H 0.39 6.53 8.53 -40.82 -0.35 6.18 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 39 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 40 H 0.07 0.48 7.66 -51.92 -0.40 0.08 16 41 H 0.07 0.47 7.66 -51.93 -0.40 0.07 16 42 H 0.14 0.87 6.29 -52.49 -0.33 0.54 16 43 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 44 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 45 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.13 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 375.81 15.07 5.66 5.66 Total: -1.00 -32.66 375.81 -7.78 -40.43 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -6.63 Total: 4.43 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -1.61 Total: -10.43 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.48 Total: -38.63 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -1.17 Total: -21.72 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -4.51 Total: 20.26 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.66 -7.78 -40.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358078141.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.772 kcal (2) G-P(sol) polarization free energy of solvation -32.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds