Wall clock time and date at job start Tue Mar 31 2020 19:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.07998 * 120.00113 * 114.30626 * 5 3 2 7 7 C 1.37885 * 120.00206 * 294.30516 * 5 3 2 8 8 N 1.31513 * 119.99776 * 153.95278 * 7 5 3 9 9 Si 1.86800 * 119.99811 * 333.95909 * 7 5 3 10 10 H 1.48501 * 109.46792 * 180.02562 * 9 7 5 11 11 H 1.48504 * 109.46850 * 299.99560 * 9 7 5 12 12 H 1.48492 * 109.47278 * 59.99696 * 9 7 5 13 13 N 1.46491 * 109.47275 * 294.27990 * 3 2 1 14 14 C 1.34781 * 119.99991 * 84.99959 * 13 3 2 15 15 O 1.21283 * 120.00070 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99955 * 179.97438 * 14 13 3 17 17 C 1.53002 * 109.46981 * 180.02562 * 16 14 13 18 18 C 1.52995 * 109.46939 * 180.02562 * 17 16 14 19 19 O 1.42907 * 109.46999 * 180.02562 * 18 17 16 20 20 C 1.35976 * 116.99892 * 179.97438 * 19 18 17 21 21 C 1.38700 * 119.98922 * 359.97438 * 20 19 18 22 22 C 1.38220 * 120.08614 * 179.97438 * 21 20 19 23 23 C 1.38523 * 120.09611 * 0.02562 * 22 21 20 24 24 C 1.39257 * 119.92401 * 0.02562 * 23 22 21 25 25 C 1.38533 * 119.87664 * 359.70193 * 24 23 22 26 26 O 1.36499 * 108.64623 * 179.97438 * 24 23 22 27 27 C 1.43977 * 105.50377 * 342.70159 * 26 24 23 28 28 O 1.36608 * 131.45992 * 179.97438 * 23 22 21 29 29 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 30 30 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 32 32 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 33 33 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 34 34 H 0.96996 * 120.00478 * 354.97061 * 8 7 5 35 35 H 0.97000 * 120.00810 * 264.99777 * 13 3 2 36 36 H 1.08999 * 109.47161 * 300.00319 * 16 14 13 37 37 H 1.08996 * 109.46861 * 60.00556 * 16 14 13 38 38 H 1.08999 * 109.47408 * 300.00136 * 17 16 14 39 39 H 1.08999 * 109.46846 * 60.00007 * 17 16 14 40 40 H 1.09010 * 109.47132 * 299.99658 * 18 17 16 41 41 H 1.08999 * 109.47677 * 60.00110 * 18 17 16 42 42 H 1.08001 * 119.95450 * 0.02562 * 21 20 19 43 43 H 1.08003 * 119.94450 * 180.02562 * 22 21 20 44 44 H 1.07994 * 120.00686 * 180.31419 * 25 24 23 45 45 H 1.08999 * 110.57205 * 268.58311 * 27 26 24 46 46 H 1.09001 * 110.57400 * 145.71292 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1585 1.8023 -0.6685 7 6 4.1236 0.9911 1.3056 8 7 5.3469 0.5087 1.2833 9 14 3.1763 1.0612 2.9141 10 1 4.0195 0.5178 4.0091 11 1 2.8198 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3341 2.6307 -0.4672 16 6 0.0681 3.3275 -2.6859 17 6 -1.3523 3.8846 -2.5713 18 6 -1.7415 4.5631 -3.8862 19 8 -3.0679 5.0840 -3.7789 20 6 -3.5701 5.7232 -4.8690 21 6 -2.8005 5.8459 -6.0164 22 6 -3.3091 6.4948 -7.1257 23 6 -4.5886 7.0249 -7.0945 24 6 -5.3627 6.9039 -5.9433 25 6 -4.8529 6.2482 -4.8346 26 8 -6.5696 7.5022 -6.1642 27 6 -6.3762 8.3456 -7.3149 28 8 -5.3112 7.6999 -8.0371 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 5.8117 0.4042 0.4384 35 1 2.2954 2.1150 -1.9977 36 1 0.7620 4.1421 -2.8933 37 1 0.1091 2.6000 -3.4965 38 1 -2.0464 3.0703 -2.3637 39 1 -1.3928 4.6121 -1.7606 40 1 -1.0474 5.3775 -4.0942 41 1 -1.7010 3.8353 -4.6966 42 1 -1.8029 5.4331 -6.0433 43 1 -2.7081 6.5886 -8.0181 44 1 -5.4534 6.1487 -3.9425 45 1 -6.0783 9.3485 -7.0090 46 1 -7.2823 8.3820 -7.9198 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358078141.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:03 Heat of formation + Delta-G solvation = -144.493080 kcal Electronic energy + Delta-G solvation = -27622.074092 eV Core-core repulsion = 23477.061917 eV Total energy + Delta-G solvation = -4145.012175 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.15079 -40.93124 -40.58972 -37.66851 -37.29246 -37.06582 -34.70383 -34.44592 -33.03579 -31.74238 -30.31925 -29.35537 -27.83964 -26.69654 -24.60700 -24.16824 -23.73008 -22.78080 -21.73968 -21.10743 -19.91108 -19.52425 -18.91368 -18.47220 -17.82419 -17.62628 -17.40672 -17.09516 -16.57407 -16.40034 -15.96014 -15.54719 -15.48885 -15.05493 -14.90093 -14.82206 -14.48227 -14.41269 -14.08343 -14.03268 -13.91338 -13.82285 -13.61984 -13.36289 -13.07059 -12.64981 -12.55002 -12.51214 -12.45530 -12.25958 -11.81162 -11.76716 -11.74671 -11.55337 -11.21325 -11.18758 -10.65169 -10.39553 -9.85266 -9.72751 -8.83327 -8.79462 -6.38691 0.05064 0.17156 1.46864 1.48708 1.55302 1.69661 1.88485 2.13689 2.42735 2.51038 2.54490 2.78476 2.94333 3.43570 3.75981 3.79902 3.87028 3.99121 3.99315 4.04996 4.15652 4.27459 4.33273 4.34076 4.42014 4.42934 4.51130 4.52136 4.58389 4.70966 4.75344 4.91072 5.00635 5.04914 5.10747 5.12278 5.17381 5.22734 5.25090 5.31239 5.33326 5.57008 5.74893 5.75359 6.00440 6.05172 6.36909 6.57740 6.95534 7.29592 7.56347 8.57027 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.034589 B = 0.001664 C = 0.001635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.312519 B =16824.990550 C =17119.196001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.128 4.128 3 C 0.253 3.747 4 H 0.018 0.982 5 C -0.625 4.625 6 H 0.044 0.956 7 C 0.006 3.994 8 N -0.916 5.916 9 Si 1.061 2.939 10 H -0.282 1.282 11 H -0.275 1.275 12 H -0.258 1.258 13 N -0.706 5.706 14 C 0.495 3.505 15 O -0.588 6.588 16 C -0.125 4.125 17 C -0.098 4.098 18 C 0.060 3.940 19 O -0.326 6.326 20 C 0.140 3.860 21 C -0.193 4.193 22 C -0.056 4.056 23 C -0.027 4.027 24 C 0.057 3.943 25 C -0.155 4.155 26 O -0.325 6.325 27 C 0.205 3.795 28 O -0.323 6.323 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.035 0.965 32 H 0.054 0.946 33 H 0.046 0.954 34 H 0.262 0.738 35 H 0.404 0.596 36 H 0.120 0.880 37 H 0.124 0.876 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.173 0.827 43 H 0.163 0.837 44 H 0.141 0.859 45 H 0.103 0.897 46 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.469 13.619 -20.960 31.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.167 4.167 3 C 0.148 3.852 4 H 0.035 0.965 5 C -0.662 4.662 6 H 0.062 0.938 7 C -0.197 4.197 8 N -0.550 5.550 9 Si 0.884 3.116 10 H -0.207 1.207 11 H -0.201 1.201 12 H -0.182 1.182 13 N -0.355 5.355 14 C 0.283 3.717 15 O -0.469 6.469 16 C -0.165 4.165 17 C -0.136 4.136 18 C -0.014 4.014 19 O -0.240 6.240 20 C 0.094 3.906 21 C -0.211 4.211 22 C -0.075 4.075 23 C -0.071 4.071 24 C 0.013 3.987 25 C -0.174 4.174 26 O -0.242 6.242 27 C 0.095 3.905 28 O -0.240 6.240 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.239 0.761 36 H 0.138 0.862 37 H 0.142 0.858 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.190 0.810 43 H 0.181 0.819 44 H 0.158 0.842 45 H 0.121 0.879 46 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -20.136 13.277 -18.625 30.473 hybrid contribution 0.491 0.375 -1.782 1.886 sum -19.644 13.652 -20.406 31.444 Atomic orbital electron populations 1.21764 0.95584 1.00182 1.01447 1.22117 0.95199 0.98570 1.00814 1.18665 0.93355 0.89449 0.83731 0.96452 1.22167 0.91572 1.48559 1.03913 0.93798 1.26603 0.96737 0.91413 1.04917 1.70958 1.15053 1.38891 1.30064 0.83785 0.75776 0.78210 0.73810 1.20722 1.20050 1.18226 1.46123 1.15855 1.56445 1.17028 1.21333 0.81295 0.78268 0.90804 1.90666 1.51593 1.61073 1.43565 1.21517 0.97595 1.02596 0.94748 1.21106 0.95470 1.00459 0.96540 1.23039 0.80533 0.98972 0.98882 1.86066 1.33388 1.69248 1.35332 1.18482 0.92131 0.92983 0.87050 1.21359 1.02620 1.05304 0.91866 1.20171 0.90455 0.96650 1.00190 1.19953 0.95403 1.04060 0.87643 1.19448 0.84881 0.99317 0.95097 1.19130 0.95209 1.05097 0.97968 1.87330 1.28340 1.59276 1.49213 1.26111 0.91891 0.92425 0.80112 1.87335 1.41032 1.64662 1.30988 0.92790 0.92794 0.94545 0.92691 0.93522 0.92860 0.76099 0.86202 0.85786 0.91789 0.92083 0.89300 0.89149 0.80989 0.81911 0.84155 0.87917 0.82137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.08 8.53 71.98 0.61 -4.47 16 2 C -0.13 -5.51 5.37 30.60 0.16 -5.35 16 3 C 0.25 11.64 1.84 44.25 0.08 11.72 16 4 H 0.02 0.90 6.12 -2.39 -0.01 0.88 16 5 C -0.62 -33.09 8.92 25.60 0.23 -32.86 16 6 H 0.04 2.44 7.96 -2.91 -0.02 2.41 16 7 C 0.01 0.35 5.15 84.66 0.44 0.79 16 8 N -0.92 -54.13 13.70 21.45 0.29 -53.84 16 9 Si 1.06 50.16 26.56 68.60 1.82 51.98 16 10 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 11 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.26 -11.42 6.34 99.48 0.63 -10.79 16 13 N -0.71 -25.70 5.03 -446.10 -2.24 -27.94 16 14 C 0.49 16.24 6.43 87.66 0.56 16.80 16 15 O -0.59 -24.06 13.13 -3.04 -0.04 -24.10 16 16 C -0.12 -2.41 5.70 29.85 0.17 -2.24 16 17 C -0.10 -2.00 4.87 30.59 0.15 -1.85 16 18 C 0.06 0.86 4.74 71.98 0.34 1.20 16 19 O -0.33 -6.58 10.14 -93.28 -0.95 -7.53 16 20 C 0.14 2.60 6.68 22.48 0.15 2.75 16 21 C -0.19 -2.62 9.03 22.38 0.20 -2.42 16 22 C -0.06 -0.79 10.05 22.33 0.22 -0.57 16 23 C -0.03 -0.49 7.15 22.58 0.16 -0.33 16 24 C 0.06 1.17 7.15 22.59 0.16 1.33 16 25 C -0.15 -3.16 10.00 22.44 0.22 -2.94 16 26 O -0.33 -6.16 11.40 -76.04 -0.87 -7.03 16 27 C 0.21 2.36 8.89 113.37 1.01 3.36 16 28 O -0.32 -5.56 11.41 -77.32 -0.88 -6.44 16 29 H 0.05 2.00 5.63 -2.39 -0.01 1.98 16 30 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 31 H 0.04 1.49 7.89 -2.39 -0.02 1.47 16 32 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.05 2.13 5.77 -2.39 -0.01 2.12 16 34 H 0.26 15.42 8.73 -92.71 -0.81 14.61 16 35 H 0.40 12.67 8.53 -92.71 -0.79 11.88 16 36 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.06 1.54 8.10 -2.39 -0.02 1.52 16 39 H 0.06 1.51 8.10 -2.39 -0.02 1.49 16 40 H 0.09 0.89 7.66 -2.38 -0.02 0.87 16 41 H 0.09 0.87 7.66 -2.39 -0.02 0.86 16 42 H 0.17 1.28 6.29 -2.91 -0.02 1.26 16 43 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 44 H 0.14 2.79 8.06 -2.91 -0.02 2.76 16 45 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.16 0.73 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -72.95 375.81 2.12 -70.83 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.10 Total: 19.14 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: 4.88 Total: -15.07 kcal Atomic # 7 Polarization: -79.84 SS G_CDS: -1.95 Total: -81.78 kcal Atomic # 8 Polarization: -42.37 SS G_CDS: -2.73 Total: -45.10 kcal Atomic # 14 Polarization: 50.16 SS G_CDS: 1.82 Total: 51.98 kcal Total: -72.95 2.12 -70.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358078141.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.664 kcal (2) G-P(sol) polarization free energy of solvation -72.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds