Wall clock time and date at job start Tue Mar 31 2020 19:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53006 * 109.46764 * 2 1 4 4 H 1.08998 * 109.47357 * 303.71600 * 3 2 1 5 5 O 1.42901 * 109.47123 * 63.71679 * 3 2 1 6 6 C 1.35896 * 116.99781 * 256.04513 * 5 3 2 7 7 C 1.38754 * 120.06064 * 5.62564 * 6 5 3 8 8 C 1.38117 * 119.94572 * 180.02562 * 7 6 5 9 9 C 1.38288 * 120.05948 * 0.02644 * 8 7 6 10 10 C 1.38241 * 120.10754 * 359.95132 * 9 8 7 11 11 C 1.50700 * 119.97131 * 179.97438 * 10 9 8 12 12 C 1.38169 * 120.05782 * 0.27970 * 10 9 8 13 13 C 1.50703 * 109.46653 * 183.71588 * 3 2 1 14 14 O 1.21289 * 119.99708 * 251.29537 * 13 3 2 15 15 N 1.34776 * 120.00162 * 71.29479 * 13 3 2 16 16 C 1.37098 * 119.99832 * 4.37763 * 15 13 3 17 17 H 1.08001 * 119.99862 * 317.78655 * 16 15 13 18 18 C 1.38951 * 120.00160 * 137.79044 * 16 15 13 19 19 N 1.31410 * 120.00101 * 169.24595 * 18 16 15 20 20 Si 1.86799 * 119.99967 * 349.23510 * 18 16 15 21 21 H 1.48504 * 109.47010 * 92.02161 * 20 18 16 22 22 H 1.48492 * 109.47370 * 212.02237 * 20 18 16 23 23 H 1.48505 * 109.47281 * 332.02560 * 20 18 16 24 24 C 1.46495 * 119.99899 * 184.36860 * 15 13 3 25 25 C 1.50697 * 109.46831 * 89.78765 * 24 15 13 26 26 O 1.20821 * 120.00240 * 0.02562 * 25 24 15 27 27 O 1.34237 * 120.00124 * 179.97438 * 25 24 15 28 28 C 1.45200 * 117.00066 * 179.97438 * 27 25 24 29 29 H 1.08993 * 109.46865 * 60.00241 * 1 2 3 30 30 H 1.09001 * 109.46522 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46775 * 299.99786 * 1 2 3 32 32 H 1.08995 * 109.46775 * 240.00214 * 2 1 3 33 33 H 1.08993 * 109.46865 * 119.99759 * 2 1 3 34 34 H 1.08007 * 120.02524 * 0.02562 * 7 6 5 35 35 H 1.08001 * 119.96796 * 180.02562 * 8 7 6 36 36 H 1.07991 * 119.94561 * 179.97438 * 9 8 7 37 37 H 1.09003 * 109.46715 * 90.00300 * 11 10 9 38 38 H 1.09004 * 109.47311 * 210.00385 * 11 10 9 39 39 H 1.09001 * 109.46985 * 330.00499 * 11 10 9 40 40 H 1.08001 * 120.02706 * 179.73987 * 12 10 9 41 41 H 0.96999 * 119.99785 * 180.02562 * 19 18 16 42 42 H 1.09004 * 109.47052 * 209.78673 * 24 15 13 43 43 H 1.09000 * 109.47321 * 329.78764 * 24 15 13 44 44 H 1.09005 * 109.47130 * 300.00420 * 28 27 25 45 45 H 1.09002 * 109.46974 * 60.00128 * 28 27 25 46 46 H 1.08996 * 109.47010 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6233 1.9753 -0.8548 5 8 1.6363 2.0905 1.2080 6 6 0.6010 2.9666 1.1219 7 6 -0.0892 3.1116 -0.0731 8 6 -1.1407 4.0030 -0.1581 9 6 -1.5056 4.7512 0.9462 10 6 -0.8198 4.6083 2.1380 11 6 -1.2196 5.4257 3.3393 12 6 0.2359 3.7214 2.2269 13 6 3.5442 1.4435 -0.0921 14 8 4.2105 1.7592 0.8710 15 7 4.1491 1.0936 -1.2445 16 6 3.3973 0.8238 -2.3588 17 1 2.4919 0.2415 -2.2713 18 6 3.8002 1.2993 -3.6007 19 7 3.2069 0.8712 -4.6923 20 14 5.1850 2.5475 -3.7185 21 1 6.4773 1.8377 -3.8958 22 1 4.9479 3.4417 -4.8800 23 1 5.2307 3.3552 -2.4732 24 6 5.6098 1.0019 -1.3066 25 6 6.0411 -0.3959 -0.9442 26 8 5.2132 -1.2299 -0.6634 27 8 7.3450 -0.7147 -0.9344 28 6 7.6873 -2.0793 -0.5752 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.1956 2.5278 -0.9360 35 1 -1.6785 4.1159 -1.0879 36 1 -2.3277 5.4480 0.8775 37 1 -1.9684 4.8822 3.9156 38 1 -0.3439 5.6085 3.9622 39 1 -1.6356 6.3775 3.0090 40 1 0.7740 3.6132 3.1570 41 1 3.4884 1.2029 -5.5592 42 1 5.9460 1.2354 -2.3169 43 1 6.0486 1.7110 -0.6047 44 1 7.3263 -2.2916 0.4311 45 1 7.2228 -2.7681 -1.2808 46 1 8.7699 -2.2024 -0.6060 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413474838.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:09 Heat of formation + Delta-G solvation = -112.857288 kcal Electronic energy + Delta-G solvation = -30162.294337 eV Core-core repulsion = 26018.653993 eV Total energy + Delta-G solvation = -4143.640344 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.42545 -39.92749 -38.76850 -37.26033 -35.94487 -34.99328 -33.24714 -32.37734 -32.17047 -29.93896 -29.26645 -27.31491 -26.86443 -26.09761 -24.82768 -22.34277 -22.06369 -21.32174 -20.44345 -19.08923 -17.93512 -17.77620 -17.33917 -16.61375 -15.95954 -15.77055 -15.57385 -15.44305 -15.10739 -15.09533 -14.24916 -14.19296 -13.85272 -13.66100 -13.34709 -13.29847 -13.08838 -12.94657 -12.68403 -12.57165 -12.49240 -12.13599 -11.98849 -11.78375 -11.60855 -11.51670 -11.43567 -11.38252 -11.09337 -10.86653 -10.63540 -10.43651 -10.37789 -10.09095 -9.98106 -9.93067 -9.39822 -8.81365 -8.61025 -8.08682 -7.84077 -6.62980 -4.38192 1.50730 1.67472 2.75527 2.86648 2.88755 3.09043 3.11406 3.31356 3.60407 3.91627 3.96163 4.32785 4.76475 4.93394 5.03632 5.17954 5.29272 5.31293 5.33313 5.35877 5.39815 5.42617 5.46454 5.56074 5.57117 5.62152 5.63387 5.73225 5.76555 5.81234 5.89709 5.95710 6.00300 6.13363 6.24341 6.37943 6.45034 6.61157 6.65182 6.71489 6.75198 6.77681 7.00259 7.04585 7.76130 7.83348 8.04906 8.30337 8.69978 9.03706 9.34569 10.45655 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013457 B = 0.003882 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.224468 B = 7210.866629 C = 7965.690723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.133 4.133 3 C 0.083 3.917 4 H 0.112 0.888 5 O -0.289 6.289 6 C 0.147 3.853 7 C -0.216 4.216 8 C -0.075 4.075 9 C -0.169 4.169 10 C -0.054 4.054 11 C -0.112 4.112 12 C -0.159 4.159 13 C 0.500 3.500 14 O -0.569 6.569 15 N -0.449 5.449 16 C -0.354 4.354 17 H 0.116 0.884 18 C 0.069 3.931 19 N -0.855 5.855 20 Si 0.867 3.133 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.256 1.256 24 C 0.106 3.894 25 C 0.449 3.551 26 O -0.488 6.488 27 O -0.369 6.369 28 C 0.036 3.964 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.103 0.897 33 H 0.068 0.932 34 H 0.139 0.861 35 H 0.123 0.877 36 H 0.118 0.882 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.127 0.873 41 H 0.279 0.721 42 H 0.104 0.896 43 H 0.115 0.885 44 H 0.058 0.942 45 H 0.060 0.940 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.628 3.234 6.787 8.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.170 4.170 3 C 0.025 3.975 4 H 0.129 0.871 5 O -0.201 6.201 6 C 0.100 3.900 7 C -0.234 4.234 8 C -0.093 4.093 9 C -0.187 4.187 10 C -0.054 4.054 11 C -0.168 4.168 12 C -0.178 4.178 13 C 0.289 3.711 14 O -0.451 6.451 15 N -0.172 5.172 16 C -0.480 4.480 17 H 0.133 0.867 18 C -0.139 4.139 19 N -0.489 5.489 20 Si 0.695 3.305 21 H -0.194 1.194 22 H -0.207 1.207 23 H -0.180 1.180 24 C -0.018 4.018 25 C 0.289 3.711 26 O -0.373 6.373 27 O -0.286 6.286 28 C -0.058 4.058 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.121 0.879 33 H 0.087 0.913 34 H 0.156 0.844 35 H 0.141 0.859 36 H 0.136 0.864 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.145 0.855 41 H 0.089 0.911 42 H 0.121 0.879 43 H 0.133 0.867 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.448 3.045 7.320 8.645 hybrid contribution 0.779 0.132 -0.693 1.051 sum -2.669 3.176 6.627 7.818 Atomic orbital electron populations 1.21821 0.95332 1.01726 1.01762 1.21909 0.96202 0.94302 1.04629 1.22189 0.93198 0.95090 0.87072 0.87086 1.86156 1.46500 1.53570 1.33832 1.19114 0.87531 0.89313 0.94015 1.21483 0.99697 1.04019 0.98232 1.20900 0.95710 0.94450 0.98240 1.20836 1.02045 1.02791 0.93064 1.19623 0.94465 0.95883 0.95436 1.20771 1.01793 0.98802 0.95460 1.20261 1.00314 0.99014 0.98189 1.20125 0.89239 0.78608 0.83120 1.90588 1.66150 1.50709 1.37606 1.43269 1.02251 1.61013 1.10658 1.19331 1.09274 1.35389 0.84045 0.86663 1.25409 0.97416 0.95883 0.95214 1.69640 1.40911 1.40227 0.98160 0.87072 0.81767 0.82383 0.79315 1.19390 1.20665 1.17962 1.21408 0.85944 0.90794 1.03681 1.24689 0.80140 0.92352 0.73891 1.90609 1.52852 1.50480 1.43324 1.86523 1.28413 1.32540 1.81096 1.23150 1.01017 0.80797 1.00806 0.92323 0.92509 0.92863 0.87881 0.91317 0.84399 0.85947 0.86430 0.91200 0.91504 0.91579 0.85502 0.91065 0.87880 0.86725 0.92287 0.92134 0.88670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 8.64 37.16 0.32 -2.01 16 2 C -0.13 -2.50 5.40 -26.72 -0.14 -2.64 16 3 C 0.08 1.71 1.75 -27.88 -0.05 1.66 16 4 H 0.11 2.23 4.70 -51.93 -0.24 1.99 16 5 O -0.29 -5.84 9.03 -39.07 -0.35 -6.19 16 6 C 0.15 2.57 5.73 -39.22 -0.22 2.35 16 7 C -0.22 -3.46 7.83 -39.44 -0.31 -3.77 16 8 C -0.07 -1.03 10.04 -39.61 -0.40 -1.42 16 9 C -0.17 -2.14 9.70 -39.56 -0.38 -2.52 16 10 C -0.05 -0.71 5.88 -104.65 -0.62 -1.32 16 11 C -0.11 -1.07 10.01 36.01 0.36 -0.71 16 12 C -0.16 -2.47 9.64 -39.43 -0.38 -2.85 16 13 C 0.50 11.88 6.97 -10.98 -0.08 11.80 16 14 O -0.57 -14.69 16.10 -14.10 -0.23 -14.92 16 15 N -0.45 -10.62 1.65 -116.10 -0.19 -10.82 16 16 C -0.35 -8.71 8.53 -14.93 -0.13 -8.84 16 17 H 0.12 2.92 5.43 -52.49 -0.29 2.64 16 18 C 0.07 1.72 5.44 -17.47 -0.10 1.63 16 19 N -0.86 -22.18 13.96 55.50 0.77 -21.41 16 20 Si 0.87 18.89 24.67 -169.99 -4.19 14.70 16 21 H -0.27 -5.53 6.73 56.52 0.38 -5.15 16 22 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 23 H -0.26 -5.57 6.98 56.52 0.39 -5.18 16 24 C 0.11 2.34 4.65 -5.20 -0.02 2.31 16 25 C 0.45 9.68 8.02 36.00 0.29 9.97 16 26 O -0.49 -11.60 16.18 -18.75 -0.30 -11.90 16 27 O -0.37 -6.74 10.57 -39.28 -0.41 -7.15 16 28 C 0.04 0.51 10.56 101.05 1.07 1.58 16 29 H 0.06 0.88 7.09 -51.93 -0.37 0.51 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.83 6.92 -51.93 -0.36 0.47 16 32 H 0.10 2.10 5.65 -51.93 -0.29 1.81 16 33 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.14 2.25 4.65 -52.48 -0.24 2.00 16 35 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 36 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 39 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 40 H 0.13 1.87 8.06 -52.49 -0.42 1.44 16 41 H 0.28 6.76 8.31 -40.82 -0.34 6.43 16 42 H 0.10 2.22 2.94 -51.93 -0.15 2.07 16 43 H 0.11 2.37 7.37 -51.93 -0.38 1.99 16 44 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.06 0.85 8.13 -51.93 -0.42 0.42 16 46 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 374.00 15.07 5.64 5.64 Total: -1.00 -30.44 374.00 -6.20 -36.64 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -6.14 Total: 10.21 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: -0.79 Total: 5.21 kcal Atomic # 7 Polarization: -32.81 SS G_CDS: 0.58 Total: -32.23 kcal Atomic # 8 Polarization: -38.87 SS G_CDS: -1.30 Total: -40.17 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -4.19 Total: 14.70 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.44 -6.20 -36.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413474838.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.221 kcal (2) G-P(sol) polarization free energy of solvation -30.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds