Wall clock time and date at job start Tue Mar 31 2020 19:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53006 * 109.46764 * 2 1 4 4 H 1.08998 * 109.47357 * 303.71600 * 3 2 1 5 5 O 1.42901 * 109.47123 * 63.71679 * 3 2 1 6 6 C 1.35896 * 116.99781 * 256.04513 * 5 3 2 7 7 C 1.38754 * 120.06064 * 5.62564 * 6 5 3 8 8 C 1.38117 * 119.94572 * 180.02562 * 7 6 5 9 9 C 1.38288 * 120.05948 * 0.02644 * 8 7 6 10 10 C 1.38241 * 120.10754 * 359.95132 * 9 8 7 11 11 C 1.50700 * 119.97131 * 179.97438 * 10 9 8 12 12 C 1.38169 * 120.05782 * 0.27970 * 10 9 8 13 13 C 1.50703 * 109.46653 * 183.71588 * 3 2 1 14 14 O 1.21289 * 119.99708 * 251.29537 * 13 3 2 15 15 N 1.34776 * 120.00162 * 71.29479 * 13 3 2 16 16 C 1.37098 * 119.99832 * 4.37763 * 15 13 3 17 17 H 1.08001 * 119.99862 * 317.78655 * 16 15 13 18 18 C 1.38951 * 120.00160 * 137.79044 * 16 15 13 19 19 N 1.31410 * 120.00101 * 169.24595 * 18 16 15 20 20 Si 1.86799 * 119.99967 * 349.23510 * 18 16 15 21 21 H 1.48504 * 109.47010 * 92.02161 * 20 18 16 22 22 H 1.48492 * 109.47370 * 212.02237 * 20 18 16 23 23 H 1.48505 * 109.47281 * 332.02560 * 20 18 16 24 24 C 1.46495 * 119.99899 * 184.36860 * 15 13 3 25 25 C 1.50697 * 109.46831 * 89.78765 * 24 15 13 26 26 O 1.20821 * 120.00240 * 0.02562 * 25 24 15 27 27 O 1.34237 * 120.00124 * 179.97438 * 25 24 15 28 28 C 1.45200 * 117.00066 * 179.97438 * 27 25 24 29 29 H 1.08993 * 109.46865 * 60.00241 * 1 2 3 30 30 H 1.09001 * 109.46522 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46775 * 299.99786 * 1 2 3 32 32 H 1.08995 * 109.46775 * 240.00214 * 2 1 3 33 33 H 1.08993 * 109.46865 * 119.99759 * 2 1 3 34 34 H 1.08007 * 120.02524 * 0.02562 * 7 6 5 35 35 H 1.08001 * 119.96796 * 180.02562 * 8 7 6 36 36 H 1.07991 * 119.94561 * 179.97438 * 9 8 7 37 37 H 1.09003 * 109.46715 * 90.00300 * 11 10 9 38 38 H 1.09004 * 109.47311 * 210.00385 * 11 10 9 39 39 H 1.09001 * 109.46985 * 330.00499 * 11 10 9 40 40 H 1.08001 * 120.02706 * 179.73987 * 12 10 9 41 41 H 0.96999 * 119.99785 * 180.02562 * 19 18 16 42 42 H 1.09004 * 109.47052 * 209.78673 * 24 15 13 43 43 H 1.09000 * 109.47321 * 329.78764 * 24 15 13 44 44 H 1.09005 * 109.47130 * 300.00420 * 28 27 25 45 45 H 1.09002 * 109.46974 * 60.00128 * 28 27 25 46 46 H 1.08996 * 109.47010 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6233 1.9753 -0.8548 5 8 1.6363 2.0905 1.2080 6 6 0.6010 2.9666 1.1219 7 6 -0.0892 3.1116 -0.0731 8 6 -1.1407 4.0030 -0.1581 9 6 -1.5056 4.7512 0.9462 10 6 -0.8198 4.6083 2.1380 11 6 -1.2196 5.4257 3.3393 12 6 0.2359 3.7214 2.2269 13 6 3.5442 1.4435 -0.0921 14 8 4.2105 1.7592 0.8710 15 7 4.1491 1.0936 -1.2445 16 6 3.3973 0.8238 -2.3588 17 1 2.4919 0.2415 -2.2713 18 6 3.8002 1.2993 -3.6007 19 7 3.2069 0.8712 -4.6923 20 14 5.1850 2.5475 -3.7185 21 1 6.4773 1.8377 -3.8958 22 1 4.9479 3.4417 -4.8800 23 1 5.2307 3.3552 -2.4732 24 6 5.6098 1.0019 -1.3066 25 6 6.0411 -0.3959 -0.9442 26 8 5.2132 -1.2299 -0.6634 27 8 7.3450 -0.7147 -0.9344 28 6 7.6873 -2.0793 -0.5752 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.1956 2.5278 -0.9360 35 1 -1.6785 4.1159 -1.0879 36 1 -2.3277 5.4480 0.8775 37 1 -1.9684 4.8822 3.9156 38 1 -0.3439 5.6085 3.9622 39 1 -1.6356 6.3775 3.0090 40 1 0.7740 3.6132 3.1570 41 1 3.4884 1.2029 -5.5592 42 1 5.9460 1.2354 -2.3169 43 1 6.0486 1.7110 -0.6047 44 1 7.3263 -2.2916 0.4311 45 1 7.2228 -2.7681 -1.2808 46 1 8.7699 -2.2024 -0.6060 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413474838.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:09 Heat of formation + Delta-G solvation = -128.903868 kcal Electronic energy + Delta-G solvation = -30162.990169 eV Core-core repulsion = 26018.653993 eV Total energy + Delta-G solvation = -4144.336176 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.02953 -41.42067 -40.33080 -38.61230 -37.59698 -36.85650 -34.72559 -34.09142 -33.39736 -31.19370 -30.84191 -28.68470 -27.84948 -27.65082 -26.61289 -23.50557 -23.40208 -22.89707 -21.92937 -20.81124 -19.55913 -19.26193 -19.02196 -18.24429 -17.52510 -17.22477 -17.13602 -16.80688 -16.67296 -16.58602 -15.85000 -15.68668 -15.23341 -14.90670 -14.76673 -14.63289 -14.55783 -14.28521 -14.16862 -14.11953 -13.75926 -13.63796 -13.24672 -13.08406 -13.01787 -12.90270 -12.85800 -12.58797 -12.50642 -12.35648 -12.08020 -11.91428 -11.85649 -11.75145 -11.67966 -11.42444 -11.19896 -10.62950 -9.98111 -9.71045 -9.08159 -8.54671 -6.33757 0.39425 0.51782 1.04840 1.13409 1.21823 1.33661 1.39774 1.68468 1.97503 2.09940 2.69405 2.82921 2.88641 3.63644 3.75968 3.82082 3.83390 3.88934 3.95803 4.00373 4.09967 4.19218 4.27432 4.28175 4.32576 4.42659 4.46854 4.49319 4.61005 4.62004 4.76572 4.88197 4.90369 4.98178 5.00770 5.09229 5.15368 5.24346 5.25818 5.28175 5.45702 5.55075 5.67118 5.89335 5.95017 6.08823 6.44910 6.65261 6.79218 7.13084 7.46581 8.56574 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013457 B = 0.003882 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.224468 B = 7210.866629 C = 7965.690723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.124 4.124 3 C 0.092 3.908 4 H 0.111 0.889 5 O -0.310 6.310 6 C 0.113 3.887 7 C -0.229 4.229 8 C -0.076 4.076 9 C -0.161 4.161 10 C -0.051 4.051 11 C -0.110 4.110 12 C -0.174 4.174 13 C 0.488 3.512 14 O -0.597 6.597 15 N -0.452 5.452 16 C -0.355 4.355 17 H 0.100 0.900 18 C 0.035 3.965 19 N -0.887 5.887 20 Si 0.910 3.090 21 H -0.246 1.246 22 H -0.274 1.274 23 H -0.258 1.258 24 C 0.096 3.904 25 C 0.451 3.549 26 O -0.518 6.518 27 O -0.364 6.364 28 C 0.028 3.972 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.083 0.917 33 H 0.056 0.944 34 H 0.127 0.873 35 H 0.147 0.853 36 H 0.153 0.847 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.126 0.874 41 H 0.284 0.716 42 H 0.110 0.890 43 H 0.125 0.875 44 H 0.058 0.942 45 H 0.059 0.941 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.125 4.632 7.072 9.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.162 4.162 3 C 0.033 3.967 4 H 0.129 0.871 5 O -0.223 6.223 6 C 0.068 3.932 7 C -0.247 4.247 8 C -0.094 4.094 9 C -0.179 4.179 10 C -0.051 4.051 11 C -0.167 4.167 12 C -0.193 4.193 13 C 0.279 3.721 14 O -0.481 6.481 15 N -0.175 5.175 16 C -0.481 4.481 17 H 0.117 0.883 18 C -0.170 4.170 19 N -0.523 5.523 20 Si 0.734 3.266 21 H -0.172 1.172 22 H -0.200 1.200 23 H -0.183 1.183 24 C -0.028 4.028 25 C 0.293 3.707 26 O -0.406 6.406 27 O -0.281 6.281 28 C -0.065 4.065 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.075 0.925 34 H 0.145 0.855 35 H 0.165 0.835 36 H 0.171 0.829 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.105 0.895 40 H 0.144 0.856 41 H 0.094 0.906 42 H 0.128 0.872 43 H 0.143 0.857 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.927 4.437 7.596 9.634 hybrid contribution 0.919 -0.300 -0.718 1.204 sum -3.009 4.137 6.878 8.572 Atomic orbital electron populations 1.21730 0.92656 1.02991 1.02035 1.21800 0.98455 0.93037 1.02940 1.22034 0.91094 0.95994 0.87590 0.87130 1.86104 1.48075 1.54723 1.33396 1.19440 0.87866 0.90291 0.95570 1.21482 1.00810 1.05088 0.97353 1.21243 0.94833 0.93537 0.99824 1.21280 1.02187 1.02259 0.92152 1.20068 0.93087 0.94910 0.97068 1.20855 1.02414 0.99259 0.94126 1.20496 1.01476 0.99649 0.97684 1.20773 0.90701 0.77927 0.82746 1.90543 1.67095 1.52098 1.38362 1.43318 1.03040 1.60773 1.10374 1.19247 1.09232 1.35116 0.84535 0.88296 1.25911 0.99408 0.97025 0.94704 1.69706 1.42463 1.41414 0.98721 0.86381 0.80379 0.80596 0.79212 1.17171 1.20023 1.18255 1.21522 0.85112 0.91761 1.04392 1.24489 0.81051 0.91833 0.73315 1.90597 1.53915 1.51227 1.44859 1.86488 1.26049 1.35017 1.80515 1.23582 1.03856 0.78387 1.00701 0.91821 0.90667 0.92721 0.89837 0.92493 0.85527 0.83528 0.82930 0.89662 0.91272 0.89492 0.85631 0.90583 0.87244 0.85701 0.92274 0.92228 0.84082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.35 8.64 71.99 0.62 -3.72 16 2 C -0.12 -4.92 5.40 30.60 0.17 -4.76 16 3 C 0.09 3.96 1.75 29.85 0.05 4.01 16 4 H 0.11 4.70 4.70 -2.39 -0.01 4.69 16 5 O -0.31 -13.12 9.03 -73.59 -0.66 -13.79 16 6 C 0.11 4.06 5.73 22.51 0.13 4.19 16 7 C -0.23 -7.38 7.83 22.36 0.18 -7.20 16 8 C -0.08 -1.95 10.04 22.25 0.22 -1.73 16 9 C -0.16 -3.58 9.70 22.28 0.22 -3.36 16 10 C -0.05 -1.23 5.88 -19.88 -0.12 -1.35 16 11 C -0.11 -1.77 10.01 71.24 0.71 -1.06 16 12 C -0.17 -5.38 9.64 22.37 0.22 -5.17 16 13 C 0.49 24.13 6.97 87.66 0.61 24.74 16 14 O -0.60 -31.94 16.10 15.73 0.25 -31.69 16 15 N -0.45 -22.00 1.65 -639.61 -1.06 -23.05 16 16 C -0.35 -17.99 8.53 84.04 0.72 -17.27 16 17 H 0.10 5.27 5.43 -2.91 -0.02 5.26 16 18 C 0.04 1.77 5.44 84.93 0.46 2.24 16 19 N -0.89 -46.58 13.96 21.66 0.30 -46.28 16 20 Si 0.91 38.32 24.67 68.60 1.69 40.02 16 21 H -0.25 -9.51 6.73 99.48 0.67 -8.84 16 22 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 23 H -0.26 -10.96 6.98 99.48 0.69 -10.26 16 24 C 0.10 4.25 4.65 85.63 0.40 4.65 16 25 C 0.45 19.55 8.02 71.23 0.57 20.12 16 26 O -0.52 -25.19 16.18 21.98 0.36 -24.83 16 27 O -0.36 -12.89 10.57 -51.48 -0.54 -13.43 16 28 C 0.03 0.73 10.56 113.37 1.20 1.92 16 29 H 0.06 1.94 7.09 -2.39 -0.02 1.92 16 30 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.05 1.72 6.92 -2.39 -0.02 1.70 16 32 H 0.08 3.62 5.65 -2.39 -0.01 3.60 16 33 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.13 4.28 4.65 -2.91 -0.01 4.27 16 35 H 0.15 2.96 8.06 -2.91 -0.02 2.93 16 36 H 0.15 2.34 8.06 -2.92 -0.02 2.32 16 37 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.07 1.10 8.08 -2.38 -0.02 1.08 16 39 H 0.09 1.06 8.08 -2.39 -0.02 1.04 16 40 H 0.13 3.76 8.06 -2.91 -0.02 3.74 16 41 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 42 H 0.11 4.64 2.94 -2.39 -0.01 4.63 16 43 H 0.13 5.19 7.37 -2.39 -0.02 5.18 16 44 H 0.06 1.56 8.14 -2.38 -0.02 1.55 16 45 H 0.06 1.59 8.13 -2.39 -0.02 1.57 16 46 H 0.14 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -67.68 374.00 7.66 -60.02 By element: Atomic # 1 Polarization: 35.81 SS G_CDS: 0.96 Total: 36.77 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: 6.35 Total: 16.26 kcal Atomic # 7 Polarization: -68.58 SS G_CDS: -0.75 Total: -69.33 kcal Atomic # 8 Polarization: -83.14 SS G_CDS: -0.60 Total: -83.74 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 1.69 Total: 40.02 kcal Total: -67.68 7.66 -60.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413474838.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.879 kcal (2) G-P(sol) polarization free energy of solvation -67.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds