Wall clock time and date at job start Tue Mar 31 2020 18:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47820 * 2 1 4 4 C 1.53008 * 109.47174 * 120.00674 * 2 1 3 5 5 H 1.09002 * 109.46916 * 184.99756 * 4 2 1 6 6 N 1.46500 * 109.46837 * 304.99190 * 4 2 1 7 7 C 1.34773 * 120.00431 * 275.00470 * 6 4 2 8 8 O 1.21593 * 119.99894 * 359.97438 * 7 6 4 9 9 N 1.34777 * 120.00097 * 179.72742 * 7 6 4 10 10 C 1.46504 * 119.99854 * 180.27545 * 9 7 6 11 11 C 1.50701 * 109.46923 * 179.97438 * 10 9 7 12 12 H 1.07998 * 120.00145 * 359.97438 * 11 10 9 13 13 C 1.37869 * 120.00027 * 179.97438 * 11 10 9 14 14 N 1.31517 * 120.00263 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00327 * 180.02562 * 13 11 10 16 16 H 1.48508 * 109.46954 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47242 * 120.00258 * 15 13 11 18 18 H 1.48494 * 109.47552 * 240.00390 * 15 13 11 19 19 C 1.50691 * 109.47321 * 64.99683 * 4 2 1 20 20 N 1.30977 * 126.44250 * 105.00230 * 19 4 2 21 21 C 1.35214 * 105.57887 * 179.97438 * 20 19 4 22 22 C 1.48448 * 126.40982 * 180.02562 * 21 20 19 23 23 N 1.33977 * 125.64480 * 359.69284 * 22 21 20 24 24 C 1.30636 * 109.79258 * 179.81356 * 23 22 21 25 25 N 1.34581 * 108.28347 * 0.44652 * 24 23 22 26 26 H 0.97003 * 126.74363 * 179.76614 * 25 24 23 27 27 N 1.31478 * 125.64780 * 179.97438 * 22 21 20 28 28 N 1.30749 * 107.17571 * 359.97438 * 21 20 19 29 29 O 1.21290 * 110.09868 * 359.73184 * 28 21 20 30 30 H 1.09001 * 109.46343 * 299.99933 * 1 2 3 31 31 H 1.08999 * 109.47238 * 59.99166 * 1 2 3 32 32 H 1.08996 * 109.46957 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47036 * 239.99912 * 2 1 3 34 34 H 1.08998 * 109.47562 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.47396 * 300.00737 * 3 2 1 36 36 H 1.09005 * 109.46888 * 59.99822 * 3 2 1 37 37 H 0.97000 * 119.99456 * 95.00032 * 6 4 2 38 38 H 0.97000 * 119.99736 * 0.26819 * 9 7 6 39 39 H 1.08998 * 109.46968 * 299.99782 * 10 9 7 40 40 H 1.08997 * 109.47198 * 59.99605 * 10 9 7 41 41 H 0.96994 * 120.00789 * 180.02562 * 14 13 11 42 42 H 1.07993 * 125.86047 * 180.16968 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 3.1264 -0.6445 1.2951 6 7 1.4560 -0.1038 2.4424 7 6 2.0350 0.9826 2.9909 8 8 3.0425 1.4499 2.4958 9 7 1.4946 1.5540 4.0854 10 6 2.1206 2.7386 4.6781 11 6 1.3265 3.1774 5.8814 12 1 0.4436 2.6292 6.1750 13 6 1.7271 4.2789 6.6074 14 7 2.8020 4.9469 6.2496 15 14 0.7432 4.8225 8.0993 16 1 -0.4128 3.9098 8.2893 17 1 1.6091 4.7815 9.3051 18 1 0.2514 6.2079 7.8900 19 6 1.6413 -2.1734 1.1888 20 7 2.4271 -3.1853 0.9163 21 6 1.6397 -4.2829 0.9764 22 6 2.0647 -5.6860 0.7433 23 7 3.3047 -6.0841 0.4287 24 6 3.3322 -7.3837 0.2981 25 7 2.0918 -7.8566 0.5192 26 1 1.8102 -8.7843 0.4875 27 7 1.2856 -6.7431 0.8063 28 7 0.4343 -3.8772 1.2795 29 8 0.4207 -2.6714 1.4098 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 3.1301 1.4423 0.0005 35 1 1.6768 1.9563 -0.8899 36 1 1.6768 1.9563 0.8900 37 1 0.6525 -0.4768 2.8376 38 1 0.6911 1.1810 4.4806 39 1 3.1390 2.4973 4.9827 40 1 2.1421 3.5439 3.9439 41 1 3.0841 5.7216 6.7605 42 1 4.2003 -7.9764 0.0505 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426415164.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:11 Heat of formation + Delta-G solvation = 132.050470 kcal Electronic energy + Delta-G solvation = -28254.340837 eV Core-core repulsion = 24082.365649 eV Total energy + Delta-G solvation = -4171.975188 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.149 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.96134 -42.65377 -39.84546 -36.99020 -36.24668 -34.12533 -33.45024 -33.02689 -32.71406 -32.07303 -31.41900 -27.90335 -27.08967 -26.50052 -25.72858 -24.00608 -22.72477 -22.60983 -21.30329 -20.57746 -19.68793 -19.11443 -18.49896 -18.38990 -17.73112 -16.38293 -16.05236 -16.01578 -15.70153 -15.58165 -15.09995 -14.74245 -14.69354 -14.01700 -13.81468 -13.53183 -13.02423 -12.91798 -12.76773 -12.52095 -12.10927 -12.05032 -11.97274 -11.78221 -11.59198 -11.41329 -10.97486 -10.94493 -10.89919 -10.86904 -10.72463 -10.70149 -10.60094 -10.29724 -9.94727 -9.47745 -9.35273 -8.92628 -8.72006 -7.81787 -6.15163 -4.21486 0.43705 0.98380 1.62984 1.83544 2.37996 2.68078 2.74512 2.99216 3.25008 3.32505 3.35293 3.52506 3.82834 4.12330 4.18213 4.33456 4.65611 4.68379 4.87036 4.94253 5.06917 5.16214 5.21381 5.34239 5.47964 5.53088 5.54706 5.70258 5.78218 5.89874 6.09078 6.12741 6.32149 6.36962 6.55630 6.70919 7.01203 7.33851 7.46480 7.52306 7.56393 7.75414 7.85394 8.01764 8.74035 8.88063 9.25721 9.46250 10.94952 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.017436 B = 0.002290 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.527589 B =12225.321100 C =12930.288635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.104 4.104 3 C -0.137 4.137 4 C 0.268 3.732 5 H 0.137 0.863 6 N -0.752 5.752 7 C 0.699 3.301 8 O -0.587 6.587 9 N -0.725 5.725 10 C 0.267 3.733 11 C -0.541 4.541 12 H 0.063 0.937 13 C 0.064 3.936 14 N -0.885 5.885 15 Si 0.903 3.097 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.282 1.282 19 C 0.190 3.810 20 N -0.434 5.434 21 C 0.247 3.753 22 C 0.309 3.691 23 N -0.505 5.505 24 C 0.271 3.729 25 N -0.476 5.476 26 H 0.448 0.552 27 N -0.269 5.269 28 N -0.344 5.344 29 O 0.099 5.901 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.050 0.950 36 H 0.071 0.929 37 H 0.397 0.603 38 H 0.388 0.612 39 H 0.026 0.974 40 H 0.027 0.973 41 H 0.265 0.735 42 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.142 -23.588 -14.549 27.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.125 4.125 3 C -0.194 4.194 4 C 0.159 3.841 5 H 0.154 0.846 6 N -0.411 5.411 7 C 0.399 3.601 8 O -0.465 6.465 9 N -0.377 5.377 10 C 0.147 3.853 11 C -0.580 4.580 12 H 0.081 0.919 13 C -0.140 4.140 14 N -0.522 5.522 15 Si 0.730 3.270 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.208 1.208 19 C -0.032 4.032 20 N -0.166 5.166 21 C -0.025 4.025 22 C 0.027 3.973 23 N -0.233 5.233 24 C -0.028 4.028 25 N -0.196 5.196 26 H 0.295 0.705 27 N -0.102 5.102 28 N -0.047 5.047 29 O 0.033 5.967 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.231 0.769 38 H 0.220 0.780 39 H 0.044 0.956 40 H 0.045 0.955 41 H 0.075 0.925 42 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -2.794 -23.406 -14.797 27.832 hybrid contribution -1.192 -0.853 1.155 1.866 sum -3.986 -24.259 -13.642 28.115 Atomic orbital electron populations 1.21913 0.94438 1.01590 1.03031 1.21641 0.96878 0.98358 0.95584 1.21837 1.02084 0.93221 1.02247 1.19318 1.00979 0.76750 0.87069 0.84585 1.45116 1.32254 1.32857 1.30885 1.15941 0.83370 0.79629 0.81126 1.90914 1.26133 1.64993 1.64456 1.45745 1.30850 1.32959 1.28135 1.19018 0.93509 0.80427 0.92387 1.21256 1.11843 1.13117 1.11780 0.91885 1.24932 0.95160 0.96060 0.97860 1.69979 1.23468 1.19059 1.39701 0.86374 0.79857 0.78555 0.82179 1.19677 1.20856 1.20829 1.29108 0.79935 0.99215 0.94930 1.72085 1.29527 0.96086 1.18940 1.21655 0.85826 0.91556 1.03485 1.19767 0.88078 0.89012 1.00434 1.70563 1.20582 1.10421 1.21775 1.26322 0.90228 0.90740 0.95511 1.48230 1.07534 1.10131 1.53744 0.70491 1.78383 1.16180 0.92727 1.22929 1.75021 1.20109 0.91859 1.17749 1.85366 1.33495 1.14832 1.63015 0.91439 0.92005 0.93126 0.90046 0.91531 0.93135 0.90999 0.76892 0.78014 0.95596 0.95509 0.92517 0.74961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 8.75 37.16 0.33 -1.23 16 2 C -0.10 -1.18 2.73 -90.62 -0.25 -1.43 16 3 C -0.14 -1.84 7.80 37.16 0.29 -1.55 16 4 C 0.27 3.40 2.50 -69.08 -0.17 3.23 16 5 H 0.14 1.93 7.58 -51.93 -0.39 1.54 16 6 N -0.75 -10.28 4.05 -59.81 -0.24 -10.52 16 7 C 0.70 12.94 7.13 -86.92 -0.62 12.32 16 8 O -0.59 -12.83 13.48 5.28 0.07 -12.76 16 9 N -0.73 -14.47 5.55 -66.41 -0.37 -14.84 16 10 C 0.27 6.84 5.43 -5.19 -0.03 6.81 16 11 C -0.54 -14.36 9.28 -34.44 -0.32 -14.68 16 12 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 13 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 14 N -0.88 -25.67 13.29 55.43 0.74 -24.93 16 15 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 16 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 19 C 0.19 2.42 6.73 -12.99 -0.09 2.33 16 20 N -0.43 -6.24 11.58 -9.89 -0.11 -6.36 16 21 C 0.25 3.55 8.16 -156.12 -1.27 2.27 16 22 C 0.31 4.04 8.08 -156.62 -1.27 2.78 16 23 N -0.51 -5.74 11.21 -12.37 -0.14 -5.87 16 24 C 0.27 1.55 13.11 -90.68 -1.19 0.36 16 25 N -0.48 -2.76 7.44 29.52 0.22 -2.54 16 26 H 0.45 0.61 8.96 -182.34 -1.63 -1.02 16 27 N -0.27 -3.04 12.83 32.11 0.41 -2.63 16 28 N -0.34 -4.77 12.20 30.97 0.38 -4.39 16 29 O 0.10 1.23 9.68 18.04 0.17 1.40 16 30 H 0.07 0.72 7.47 -51.93 -0.39 0.33 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.49 6.33 -51.93 -0.33 0.16 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.97 7.84 -51.93 -0.41 0.56 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 1.17 5.65 -51.93 -0.29 0.88 16 37 H 0.40 4.52 8.45 -40.82 -0.34 4.17 16 38 H 0.39 6.66 8.34 -40.82 -0.34 6.32 16 39 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 42 H 0.23 -0.04 8.06 -52.49 -0.42 -0.46 16 LS Contribution 362.61 15.07 5.46 5.46 Total: -1.00 -35.99 362.61 -9.31 -45.30 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -6.20 Total: 4.19 kcal Atomic # 6 Polarization: 17.55 SS G_CDS: -4.69 Total: 12.86 kcal Atomic # 7 Polarization: -72.98 SS G_CDS: 0.88 Total: -72.10 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.25 Total: -11.36 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.99 -9.31 -45.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426415164.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.351 kcal (2) G-P(sol) polarization free energy of solvation -35.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds