Wall clock time and date at job start Tue Mar 31 2020 18:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47820 * 2 1 4 4 C 1.53008 * 109.47174 * 120.00674 * 2 1 3 5 5 H 1.09002 * 109.46916 * 184.99756 * 4 2 1 6 6 N 1.46500 * 109.46837 * 304.99190 * 4 2 1 7 7 C 1.34773 * 120.00431 * 275.00470 * 6 4 2 8 8 O 1.21593 * 119.99894 * 359.97438 * 7 6 4 9 9 N 1.34777 * 120.00097 * 179.72742 * 7 6 4 10 10 C 1.46504 * 119.99854 * 180.27545 * 9 7 6 11 11 C 1.50701 * 109.46923 * 179.97438 * 10 9 7 12 12 H 1.07998 * 120.00145 * 359.97438 * 11 10 9 13 13 C 1.37869 * 120.00027 * 179.97438 * 11 10 9 14 14 N 1.31517 * 120.00263 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00327 * 180.02562 * 13 11 10 16 16 H 1.48508 * 109.46954 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47242 * 120.00258 * 15 13 11 18 18 H 1.48494 * 109.47552 * 240.00390 * 15 13 11 19 19 C 1.50691 * 109.47321 * 64.99683 * 4 2 1 20 20 N 1.30977 * 126.44250 * 105.00230 * 19 4 2 21 21 C 1.35214 * 105.57887 * 179.97438 * 20 19 4 22 22 C 1.48448 * 126.40982 * 180.02562 * 21 20 19 23 23 N 1.33977 * 125.64480 * 359.69284 * 22 21 20 24 24 C 1.30636 * 109.79258 * 179.81356 * 23 22 21 25 25 N 1.34581 * 108.28347 * 0.44652 * 24 23 22 26 26 H 0.97003 * 126.74363 * 179.76614 * 25 24 23 27 27 N 1.31478 * 125.64780 * 179.97438 * 22 21 20 28 28 N 1.30749 * 107.17571 * 359.97438 * 21 20 19 29 29 O 1.21290 * 110.09868 * 359.73184 * 28 21 20 30 30 H 1.09001 * 109.46343 * 299.99933 * 1 2 3 31 31 H 1.08999 * 109.47238 * 59.99166 * 1 2 3 32 32 H 1.08996 * 109.46957 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47036 * 239.99912 * 2 1 3 34 34 H 1.08998 * 109.47562 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.47396 * 300.00737 * 3 2 1 36 36 H 1.09005 * 109.46888 * 59.99822 * 3 2 1 37 37 H 0.97000 * 119.99456 * 95.00032 * 6 4 2 38 38 H 0.97000 * 119.99736 * 0.26819 * 9 7 6 39 39 H 1.08998 * 109.46968 * 299.99782 * 10 9 7 40 40 H 1.08997 * 109.47198 * 59.99605 * 10 9 7 41 41 H 0.96994 * 120.00789 * 180.02562 * 14 13 11 42 42 H 1.07993 * 125.86047 * 180.16968 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 3.1264 -0.6445 1.2951 6 7 1.4560 -0.1038 2.4424 7 6 2.0350 0.9826 2.9909 8 8 3.0425 1.4499 2.4958 9 7 1.4946 1.5540 4.0854 10 6 2.1206 2.7386 4.6781 11 6 1.3265 3.1774 5.8814 12 1 0.4436 2.6292 6.1750 13 6 1.7271 4.2789 6.6074 14 7 2.8020 4.9469 6.2496 15 14 0.7432 4.8225 8.0993 16 1 -0.4128 3.9098 8.2893 17 1 1.6091 4.7815 9.3051 18 1 0.2514 6.2079 7.8900 19 6 1.6413 -2.1734 1.1888 20 7 2.4271 -3.1853 0.9163 21 6 1.6397 -4.2829 0.9764 22 6 2.0647 -5.6860 0.7433 23 7 3.3047 -6.0841 0.4287 24 6 3.3322 -7.3837 0.2981 25 7 2.0918 -7.8566 0.5192 26 1 1.8102 -8.7843 0.4875 27 7 1.2856 -6.7431 0.8063 28 7 0.4343 -3.8772 1.2795 29 8 0.4207 -2.6714 1.4098 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 3.1301 1.4423 0.0005 35 1 1.6768 1.9563 -0.8899 36 1 1.6768 1.9563 0.8900 37 1 0.6525 -0.4768 2.8376 38 1 0.6911 1.1810 4.4806 39 1 3.1390 2.4973 4.9827 40 1 2.1421 3.5439 3.9439 41 1 3.0841 5.7216 6.7605 42 1 4.2003 -7.9764 0.0505 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426415164.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:10 Heat of formation + Delta-G solvation = 102.975778 kcal Electronic energy + Delta-G solvation = -28255.601610 eV Core-core repulsion = 24082.365649 eV Total energy + Delta-G solvation = -4173.235962 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.149 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -47.00617 -43.30033 -41.28021 -38.28465 -37.27506 -35.97947 -34.56842 -34.29413 -33.74846 -33.48297 -32.23458 -29.52080 -28.10706 -27.97501 -26.67699 -24.94477 -24.55682 -23.35189 -22.23433 -22.06198 -20.80771 -19.97688 -19.75993 -19.50648 -18.81228 -18.00745 -17.38717 -17.05149 -16.73044 -16.69474 -16.40744 -15.98126 -15.70848 -15.43709 -15.23248 -14.79085 -14.53702 -13.97661 -13.96289 -13.83690 -13.49805 -13.42282 -13.15791 -12.90337 -12.80584 -12.73886 -12.58460 -12.47713 -12.18070 -11.91241 -11.83696 -11.75953 -11.40994 -11.38696 -11.34197 -11.14824 -10.76869 -10.75692 -10.27594 -9.61705 -8.23880 -6.38718 -0.49907 0.10158 0.88438 1.19855 1.31646 1.46447 1.47059 1.59570 1.68404 1.87845 2.11572 2.28364 2.40189 2.51262 3.11558 3.28292 3.48401 3.59171 3.66131 3.91614 3.97700 4.06191 4.20837 4.41007 4.54011 4.60460 4.76631 4.86521 4.91206 4.98376 5.05094 5.11449 5.15290 5.30510 5.37011 5.42563 5.51620 5.57138 5.72633 5.91294 6.04854 6.18719 6.65379 6.73234 6.81001 7.27221 7.31523 7.73875 8.88200 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.017436 B = 0.002290 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.527589 B =12225.321100 C =12930.288635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 C -0.131 4.131 4 C 0.272 3.728 5 H 0.122 0.878 6 N -0.731 5.731 7 C 0.705 3.295 8 O -0.621 6.621 9 N -0.722 5.722 10 C 0.288 3.712 11 C -0.552 4.552 12 H 0.082 0.918 13 C 0.005 3.995 14 N -0.929 5.929 15 Si 0.981 3.019 16 H -0.255 1.255 17 H -0.281 1.281 18 H -0.279 1.279 19 C 0.199 3.801 20 N -0.451 5.451 21 C 0.239 3.761 22 C 0.282 3.718 23 N -0.551 5.551 24 C 0.295 3.705 25 N -0.456 5.456 26 H 0.468 0.532 27 N -0.296 5.296 28 N -0.354 5.354 29 O 0.110 5.890 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.100 0.900 34 H 0.048 0.952 35 H 0.069 0.931 36 H 0.040 0.960 37 H 0.412 0.588 38 H 0.404 0.596 39 H -0.012 1.012 40 H -0.008 1.008 41 H 0.268 0.732 42 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.571 -25.899 -14.738 30.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.118 4.118 3 C -0.188 4.188 4 C 0.164 3.836 5 H 0.140 0.860 6 N -0.390 5.390 7 C 0.405 3.595 8 O -0.502 6.502 9 N -0.375 5.375 10 C 0.165 3.835 11 C -0.590 4.590 12 H 0.100 0.900 13 C -0.195 4.195 14 N -0.567 5.567 15 Si 0.804 3.196 16 H -0.179 1.179 17 H -0.207 1.207 18 H -0.205 1.205 19 C -0.023 4.023 20 N -0.184 5.184 21 C -0.034 4.034 22 C 0.000 4.000 23 N -0.281 5.281 24 C -0.002 4.002 25 N -0.178 5.178 26 H 0.319 0.681 27 N -0.131 5.131 28 N -0.057 5.057 29 O 0.044 5.956 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.118 0.882 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.059 0.941 37 H 0.249 0.751 38 H 0.239 0.761 39 H 0.006 0.994 40 H 0.010 0.990 41 H 0.076 0.924 42 H 0.307 0.693 Dipole moment (debyes) X Y Z Total from point charges -4.283 -25.825 -15.010 30.176 hybrid contribution -0.678 -0.298 1.114 1.337 sum -4.961 -26.124 -13.896 30.003 Atomic orbital electron populations 1.21885 0.93017 1.02177 1.03497 1.21614 0.97950 0.96851 0.95336 1.21735 1.00955 0.94508 1.01624 1.19308 1.00242 0.76974 0.87109 0.86017 1.44769 1.32186 1.31206 1.30810 1.15906 0.82844 0.80227 0.80531 1.90899 1.27801 1.66222 1.65242 1.45310 1.31426 1.32002 1.28779 1.18410 0.92132 0.81256 0.91741 1.21637 1.12269 1.13317 1.11735 0.90019 1.25979 0.96152 0.96132 1.01213 1.70131 1.25457 1.19757 1.41394 0.85172 0.78519 0.78215 0.77663 1.17852 1.20714 1.20523 1.28865 0.80031 0.98671 0.94773 1.72069 1.30118 0.96599 1.19582 1.22021 0.85706 0.92437 1.03216 1.19779 0.89158 0.88795 1.02292 1.70511 1.20453 1.13321 1.23767 1.27358 0.91129 0.89468 0.92276 1.48149 1.07198 1.10105 1.52369 0.68052 1.78246 1.17710 0.93660 1.23481 1.74991 1.20254 0.92168 1.18271 1.85352 1.33046 1.14506 1.62715 0.92008 0.90610 0.92392 0.88183 0.93248 0.91181 0.94061 0.75100 0.76106 0.99442 0.98977 0.92351 0.69326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 8.75 71.98 0.63 -2.14 16 2 C -0.10 -2.12 2.73 -10.79 -0.03 -2.15 16 3 C -0.13 -3.54 7.80 71.98 0.56 -2.98 16 4 C 0.27 6.87 2.50 44.24 0.11 6.98 16 5 H 0.12 3.54 7.58 -2.39 -0.02 3.52 16 6 N -0.73 -19.84 4.05 -461.41 -1.87 -21.71 16 7 C 0.70 26.71 7.13 179.06 1.28 27.98 16 8 O -0.62 -28.40 13.48 -4.01 -0.05 -28.45 16 9 N -0.72 -29.32 5.55 -482.29 -2.68 -32.00 16 10 C 0.29 15.31 5.43 85.63 0.46 15.77 16 11 C -0.55 -29.41 9.28 25.60 0.24 -29.17 16 12 H 0.08 3.96 7.60 -2.91 -0.02 3.94 16 13 C 0.00 0.27 5.46 84.65 0.46 0.73 16 14 N -0.93 -55.28 13.29 21.44 0.28 -54.99 16 15 Si 0.98 42.12 29.54 68.60 2.03 44.15 16 16 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 17 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 18 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 19 C 0.20 4.95 6.73 88.35 0.59 5.55 16 20 N -0.45 -12.95 11.58 -302.53 -3.50 -16.46 16 21 C 0.24 6.82 8.16 137.31 1.12 7.94 16 22 C 0.28 7.23 8.08 137.49 1.11 8.34 16 23 N -0.55 -11.84 11.21 -193.05 -2.16 -14.00 16 24 C 0.29 2.51 13.11 180.37 2.37 4.87 16 25 N -0.46 -4.18 7.44 -60.51 -0.45 -4.63 16 26 H 0.47 -0.10 8.96 -213.10 -1.91 -2.01 16 27 N -0.30 -6.41 12.83 -52.33 -0.67 -7.08 16 28 N -0.35 -9.66 12.20 -59.15 -0.72 -10.38 16 29 O 0.11 2.64 9.68 74.60 0.72 3.37 16 30 H 0.06 1.23 7.47 -2.39 -0.02 1.21 16 31 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.06 1.01 6.33 -2.39 -0.02 0.99 16 33 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 34 H 0.05 1.49 7.84 -2.39 -0.02 1.47 16 35 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.04 1.37 5.65 -2.38 -0.01 1.36 16 37 H 0.41 8.93 8.45 -92.71 -0.78 8.14 16 38 H 0.40 13.63 8.34 -92.71 -0.77 12.86 16 39 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 40 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 41 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 42 H 0.29 -1.50 8.06 -2.91 -0.02 -1.53 16 Total: -1.00 -82.28 362.61 -2.51 -84.79 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -2.34 Total: 15.66 kcal Atomic # 6 Polarization: 32.82 SS G_CDS: 8.90 Total: 41.72 kcal Atomic # 7 Polarization: -149.47 SS G_CDS: -11.77 Total: -161.24 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: 0.67 Total: -25.08 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -82.28 -2.51 -84.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426415164.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.766 kcal (2) G-P(sol) polarization free energy of solvation -82.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds