Wall clock time and date at job start Tue Mar 31 2020 19:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99790 * 2 1 4 4 C 1.52998 * 109.47134 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47520 * 184.99497 * 4 3 2 6 6 C 1.53002 * 109.47057 * 64.99777 * 4 3 2 7 7 C 1.50695 * 109.47309 * 60.00140 * 6 4 3 8 8 O 1.20822 * 119.99922 * 359.97438 * 7 6 4 9 9 O 1.34229 * 120.00086 * 180.02562 * 7 6 4 10 10 C 1.45199 * 117.00054 * 179.97438 * 9 7 6 11 11 N 1.46500 * 109.46994 * 304.99668 * 4 3 2 12 12 C 1.34776 * 119.99959 * 299.72335 * 11 4 3 13 13 O 1.21544 * 120.00050 * 0.27524 * 12 11 4 14 14 C 1.47882 * 119.99677 * 180.27791 * 12 11 4 15 15 C 1.39915 * 120.02909 * 359.72165 * 14 12 11 16 16 C 1.38334 * 120.36054 * 179.71733 * 15 14 12 17 17 C 1.37750 * 120.40592 * 0.56434 * 16 15 14 18 18 C 1.40744 * 120.04616 * 359.71694 * 17 16 15 19 19 C 1.41438 * 120.18145 * 180.02562 * 18 17 16 20 20 H 1.07994 * 119.99938 * 24.43181 * 19 18 17 21 21 C 1.39941 * 119.99954 * 204.44269 * 19 18 17 22 22 N 1.30826 * 120.00237 * 17.87270 * 21 19 18 23 23 Si 1.86798 * 119.99692 * 197.87815 * 21 19 18 24 24 H 1.48499 * 109.47427 * 59.99950 * 23 21 19 25 25 H 1.48504 * 109.46797 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47192 * 299.99333 * 23 21 19 27 27 C 1.39000 * 120.02330 * 180.02562 * 14 12 11 28 28 H 1.09003 * 109.47414 * 300.00518 * 1 2 3 29 29 H 1.09000 * 109.47342 * 60.00202 * 1 2 3 30 30 H 1.09002 * 109.47151 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47533 * 59.99632 * 3 2 1 32 32 H 1.09008 * 109.46756 * 299.99592 * 3 2 1 33 33 H 1.08995 * 109.47208 * 180.02562 * 5 4 3 34 34 H 1.08999 * 109.46987 * 300.00277 * 5 4 3 35 35 H 1.09000 * 109.46701 * 59.99601 * 5 4 3 36 36 H 1.08995 * 109.47358 * 180.02562 * 6 4 3 37 37 H 1.09007 * 109.47013 * 300.00102 * 6 4 3 38 38 H 1.08999 * 109.47487 * 59.99894 * 10 9 7 39 39 H 1.09002 * 109.47119 * 179.97438 * 10 9 7 40 40 H 1.09001 * 109.47250 * 299.99582 * 10 9 7 41 41 H 0.97007 * 119.99430 * 120.00178 * 11 4 3 42 42 H 1.08001 * 119.81904 * 359.97438 * 15 14 12 43 43 H 1.07997 * 119.79364 * 180.26027 * 16 15 14 44 44 H 1.08006 * 119.97605 * 179.74396 * 17 16 15 45 45 H 0.96996 * 120.00331 * 180.02562 * 22 21 19 46 46 H 1.08002 * 120.20029 * 359.97173 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1572 2.5770 0.1262 6 6 3.9962 0.5364 -1.3064 7 6 3.5603 1.3882 -2.4706 8 8 2.9438 2.4087 -2.2751 9 8 3.8559 1.0125 -3.7249 10 6 3.4040 1.8811 -4.7970 11 7 3.9592 0.3566 1.1325 12 6 3.6667 0.7364 2.3921 13 8 3.0470 1.7633 2.5888 14 6 4.0999 -0.0963 3.5348 15 6 4.8083 -1.2815 3.3087 16 6 5.2219 -2.0627 4.3728 17 6 4.9312 -1.6891 5.6664 18 6 4.2145 -0.5032 5.9133 19 6 3.9150 -0.1166 7.2404 20 1 4.5297 -0.4664 8.0565 21 6 2.8219 0.7190 7.4960 22 7 1.8834 0.8623 6.5958 23 14 2.7029 1.6300 9.1224 24 1 3.8802 2.5217 9.2777 25 1 1.4604 2.4430 9.1446 26 1 2.6737 0.6500 10.2377 27 6 3.7981 0.2946 4.8341 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6885 1.8464 0.8899 32 1 1.6885 1.8463 -0.8901 33 1 5.2438 2.4909 0.1262 34 1 3.8419 3.1930 -0.7158 35 1 3.8289 3.0388 1.0573 36 1 5.0827 0.4500 -1.3058 37 1 3.5532 -0.4555 -1.3959 38 1 3.8471 2.8695 -4.6752 39 1 3.7083 1.4627 -5.7564 40 1 2.3176 1.9635 -4.7644 41 1 4.4538 -0.4629 0.9754 42 1 5.0370 -1.5860 2.2981 43 1 5.7717 -2.9736 4.1879 44 1 5.2539 -2.3064 6.4919 45 1 1.1260 1.4417 6.7728 46 1 3.2476 1.2064 5.0131 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487971627.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:15 Heat of formation + Delta-G solvation = -141.164777 kcal Electronic energy + Delta-G solvation = -29685.492808 eV Core-core repulsion = 25540.624958 eV Total energy + Delta-G solvation = -4144.867849 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.07783 -39.58642 -37.87265 -36.86048 -36.77175 -35.21588 -33.73523 -31.83130 -29.94130 -29.43742 -28.99524 -27.40650 -27.19628 -25.30033 -24.98911 -23.22758 -21.68446 -20.96017 -19.94973 -19.16193 -17.90149 -17.78348 -16.88984 -16.69128 -16.33876 -15.97268 -15.51072 -15.45368 -15.05278 -14.63067 -14.61479 -14.07120 -13.84564 -13.80880 -13.56114 -13.15244 -13.09716 -12.76422 -12.53611 -12.43707 -12.34240 -11.93058 -11.80581 -11.60958 -11.50426 -11.25810 -11.12131 -11.04673 -11.01935 -10.86160 -10.70693 -10.48101 -10.41194 -9.96318 -9.66767 -9.40401 -9.18194 -8.76134 -8.61300 -7.59527 -7.48848 -6.77748 -4.38892 1.96734 2.25534 2.37578 2.84737 3.08623 3.10274 3.18605 3.66660 3.88536 3.93453 4.01178 4.37024 4.65230 4.74042 4.80327 4.81338 4.90302 5.16894 5.24880 5.34190 5.44856 5.54212 5.61908 5.64350 5.70500 5.79544 5.83347 5.93386 6.01769 6.09062 6.16672 6.24057 6.32320 6.55611 6.74502 6.92264 7.01337 7.05388 7.23927 7.34933 7.41355 7.52957 7.73511 7.79882 7.95692 8.13960 8.22656 8.53297 8.82765 8.86388 9.01636 10.16750 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.018166 B = 0.002923 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.008948 B = 9576.882915 C =10089.610512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.388 6.388 3 C 0.036 3.964 4 C 0.202 3.798 5 C -0.177 4.177 6 C -0.120 4.120 7 C 0.471 3.529 8 O -0.497 6.497 9 O -0.359 6.359 10 C 0.035 3.965 11 N -0.722 5.722 12 C 0.574 3.426 13 O -0.543 6.543 14 C -0.126 4.126 15 C -0.216 4.216 16 C -0.098 4.098 17 C -0.212 4.212 18 C 0.098 3.902 19 C -0.461 4.461 20 H 0.080 0.920 21 C 0.074 3.926 22 N -0.783 5.783 23 Si 0.910 3.090 24 H -0.263 1.263 25 H -0.278 1.278 26 H -0.265 1.265 27 C -0.092 4.092 28 H 0.042 0.958 29 H 0.033 0.967 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.113 0.887 37 H 0.120 0.880 38 H 0.063 0.937 39 H 0.100 0.900 40 H 0.063 0.937 41 H 0.399 0.601 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.095 0.905 45 H 0.284 0.716 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.641 0.134 -18.359 18.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.307 6.307 3 C -0.042 4.042 4 C 0.115 3.885 5 C -0.234 4.234 6 C -0.157 4.157 7 C 0.314 3.686 8 O -0.384 6.384 9 O -0.276 6.276 10 C -0.058 4.058 11 N -0.375 5.375 12 C 0.365 3.635 13 O -0.421 6.421 14 C -0.129 4.129 15 C -0.236 4.236 16 C -0.117 4.117 17 C -0.232 4.232 18 C 0.096 3.904 19 C -0.490 4.490 20 H 0.098 0.902 21 C -0.145 4.145 22 N -0.407 5.407 23 Si 0.734 3.266 24 H -0.187 1.187 25 H -0.203 1.203 26 H -0.190 1.190 27 C -0.112 4.112 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.131 0.869 37 H 0.138 0.862 38 H 0.082 0.918 39 H 0.119 0.881 40 H 0.081 0.919 41 H 0.235 0.765 42 H 0.108 0.892 43 H 0.110 0.890 44 H 0.113 0.887 45 H 0.096 0.904 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.861 1.148 -18.234 18.291 hybrid contribution -0.245 0.205 0.452 0.553 sum 0.616 1.353 -17.783 17.845 Atomic orbital electron populations 1.22655 0.81434 1.02264 0.99711 1.87784 1.19315 1.28051 1.95526 1.23331 0.92555 0.85163 1.03101 1.19880 0.92838 0.91726 0.84068 1.22442 1.00113 0.95436 1.05456 1.21580 1.04225 1.00480 0.89457 1.23415 0.76361 0.84817 0.84004 1.90590 1.37294 1.25435 1.85122 1.86507 1.73014 1.52089 1.15959 1.23269 1.00513 0.94314 0.87743 1.45831 1.59904 1.26928 1.04885 1.18699 0.77671 0.84798 0.82325 1.90624 1.40550 1.25709 1.85245 1.19462 1.04007 0.96569 0.92866 1.20343 1.08459 0.98115 0.96663 1.20431 0.99958 0.98057 0.93230 1.21091 1.08832 0.98252 0.95053 1.17593 0.89838 0.89642 0.93357 1.19546 1.10415 1.25680 0.93332 0.90171 1.25953 0.94536 0.95235 0.98821 1.69785 1.06753 1.29363 1.34813 0.86341 0.78576 0.79945 0.81748 1.18742 1.20266 1.18991 1.21628 0.99827 1.00244 0.89523 0.93931 0.94821 0.89937 0.90647 0.90989 0.92427 0.89887 0.89563 0.86890 0.86185 0.91799 0.88122 0.91855 0.76505 0.89218 0.88955 0.88703 0.90450 0.84859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 11.01 101.05 1.11 1.61 16 2 O -0.39 -6.32 10.00 -35.23 -0.35 -6.67 16 3 C 0.04 0.58 4.29 37.16 0.16 0.74 16 4 C 0.20 2.96 0.58 -131.82 -0.08 2.89 16 5 C -0.18 -2.65 8.10 37.16 0.30 -2.35 16 6 C -0.12 -1.30 4.89 -27.88 -0.14 -1.44 16 7 C 0.47 5.40 7.34 36.00 0.26 5.67 16 8 O -0.50 -6.72 11.11 -18.75 -0.21 -6.93 16 9 O -0.36 -3.55 10.57 -39.26 -0.41 -3.97 16 10 C 0.04 0.25 10.56 101.05 1.07 1.32 16 11 N -0.72 -11.95 4.82 -48.53 -0.23 -12.18 16 12 C 0.57 12.36 7.19 -12.31 -0.09 12.27 16 13 O -0.54 -13.10 12.59 5.33 0.07 -13.03 16 14 C -0.13 -2.96 5.87 -105.04 -0.62 -3.57 16 15 C -0.22 -4.51 9.55 -38.92 -0.37 -4.89 16 16 C -0.10 -2.10 10.01 -39.72 -0.40 -2.50 16 17 C -0.21 -5.05 9.78 -38.81 -0.38 -5.43 16 18 C 0.10 2.60 5.57 -106.87 -0.60 2.01 16 19 C -0.46 -12.14 9.05 -37.73 -0.34 -12.48 16 20 H 0.08 2.00 7.91 -52.49 -0.42 1.59 16 21 C 0.07 1.87 5.14 -17.34 -0.09 1.78 16 22 N -0.78 -20.81 10.95 55.55 0.61 -20.21 16 23 Si 0.91 18.89 29.60 -169.99 -5.03 13.86 16 24 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 25 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 26 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 27 C -0.09 -2.45 8.24 -38.44 -0.32 -2.77 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.08 1.47 6.32 -51.93 -0.33 1.14 16 32 H 0.07 1.12 5.42 -51.92 -0.28 0.84 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 1.19 5.52 -51.93 -0.29 0.90 16 35 H 0.09 1.55 6.15 -51.93 -0.32 1.24 16 36 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.12 1.23 7.82 -51.92 -0.41 0.82 16 38 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 39 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 41 H 0.40 5.70 6.49 -40.82 -0.26 5.43 16 42 H 0.09 1.54 6.38 -52.49 -0.33 1.21 16 43 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 44 H 0.09 2.10 8.06 -52.48 -0.42 1.68 16 45 H 0.28 6.98 8.30 -40.82 -0.34 6.65 16 46 H 0.13 3.84 5.74 -52.49 -0.30 3.54 16 LS Contribution 375.42 15.07 5.66 5.66 Total: -1.00 -31.22 375.42 -6.71 -37.94 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -6.30 Total: 12.69 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -0.51 Total: -7.15 kcal Atomic # 7 Polarization: -32.76 SS G_CDS: 0.37 Total: -32.39 kcal Atomic # 8 Polarization: -29.69 SS G_CDS: -0.91 Total: -30.60 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.03 Total: 13.86 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.22 -6.71 -37.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487971627.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.229 kcal (2) G-P(sol) polarization free energy of solvation -31.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds