Wall clock time and date at job start Tue Mar 31 2020 19:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99790 * 2 1 4 4 C 1.52998 * 109.47134 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47520 * 184.99497 * 4 3 2 6 6 C 1.53002 * 109.47057 * 64.99777 * 4 3 2 7 7 C 1.50695 * 109.47309 * 60.00140 * 6 4 3 8 8 O 1.20822 * 119.99922 * 359.97438 * 7 6 4 9 9 O 1.34229 * 120.00086 * 180.02562 * 7 6 4 10 10 C 1.45199 * 117.00054 * 179.97438 * 9 7 6 11 11 N 1.46500 * 109.46994 * 304.99668 * 4 3 2 12 12 C 1.34776 * 119.99959 * 299.72335 * 11 4 3 13 13 O 1.21544 * 120.00050 * 0.27524 * 12 11 4 14 14 C 1.47882 * 119.99677 * 180.27791 * 12 11 4 15 15 C 1.39915 * 120.02909 * 359.72165 * 14 12 11 16 16 C 1.38334 * 120.36054 * 179.71733 * 15 14 12 17 17 C 1.37750 * 120.40592 * 0.56434 * 16 15 14 18 18 C 1.40744 * 120.04616 * 359.71694 * 17 16 15 19 19 C 1.41438 * 120.18145 * 180.02562 * 18 17 16 20 20 H 1.07994 * 119.99938 * 24.43181 * 19 18 17 21 21 C 1.39941 * 119.99954 * 204.44269 * 19 18 17 22 22 N 1.30826 * 120.00237 * 17.87270 * 21 19 18 23 23 Si 1.86798 * 119.99692 * 197.87815 * 21 19 18 24 24 H 1.48499 * 109.47427 * 59.99950 * 23 21 19 25 25 H 1.48504 * 109.46797 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47192 * 299.99333 * 23 21 19 27 27 C 1.39000 * 120.02330 * 180.02562 * 14 12 11 28 28 H 1.09003 * 109.47414 * 300.00518 * 1 2 3 29 29 H 1.09000 * 109.47342 * 60.00202 * 1 2 3 30 30 H 1.09002 * 109.47151 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47533 * 59.99632 * 3 2 1 32 32 H 1.09008 * 109.46756 * 299.99592 * 3 2 1 33 33 H 1.08995 * 109.47208 * 180.02562 * 5 4 3 34 34 H 1.08999 * 109.46987 * 300.00277 * 5 4 3 35 35 H 1.09000 * 109.46701 * 59.99601 * 5 4 3 36 36 H 1.08995 * 109.47358 * 180.02562 * 6 4 3 37 37 H 1.09007 * 109.47013 * 300.00102 * 6 4 3 38 38 H 1.08999 * 109.47487 * 59.99894 * 10 9 7 39 39 H 1.09002 * 109.47119 * 179.97438 * 10 9 7 40 40 H 1.09001 * 109.47250 * 299.99582 * 10 9 7 41 41 H 0.97007 * 119.99430 * 120.00178 * 11 4 3 42 42 H 1.08001 * 119.81904 * 359.97438 * 15 14 12 43 43 H 1.07997 * 119.79364 * 180.26027 * 16 15 14 44 44 H 1.08006 * 119.97605 * 179.74396 * 17 16 15 45 45 H 0.96996 * 120.00331 * 180.02562 * 22 21 19 46 46 H 1.08002 * 120.20029 * 359.97173 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1572 2.5770 0.1262 6 6 3.9962 0.5364 -1.3064 7 6 3.5603 1.3882 -2.4706 8 8 2.9438 2.4087 -2.2751 9 8 3.8559 1.0125 -3.7249 10 6 3.4040 1.8811 -4.7970 11 7 3.9592 0.3566 1.1325 12 6 3.6667 0.7364 2.3921 13 8 3.0470 1.7633 2.5888 14 6 4.0999 -0.0963 3.5348 15 6 4.8083 -1.2815 3.3087 16 6 5.2219 -2.0627 4.3728 17 6 4.9312 -1.6891 5.6664 18 6 4.2145 -0.5032 5.9133 19 6 3.9150 -0.1166 7.2404 20 1 4.5297 -0.4664 8.0565 21 6 2.8219 0.7190 7.4960 22 7 1.8834 0.8623 6.5958 23 14 2.7029 1.6300 9.1224 24 1 3.8802 2.5217 9.2777 25 1 1.4604 2.4430 9.1446 26 1 2.6737 0.6500 10.2377 27 6 3.7981 0.2946 4.8341 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6885 1.8464 0.8899 32 1 1.6885 1.8463 -0.8901 33 1 5.2438 2.4909 0.1262 34 1 3.8419 3.1930 -0.7158 35 1 3.8289 3.0388 1.0573 36 1 5.0827 0.4500 -1.3058 37 1 3.5532 -0.4555 -1.3959 38 1 3.8471 2.8695 -4.6752 39 1 3.7083 1.4627 -5.7564 40 1 2.3176 1.9635 -4.7644 41 1 4.4538 -0.4629 0.9754 42 1 5.0370 -1.5860 2.2981 43 1 5.7717 -2.9736 4.1879 44 1 5.2539 -2.3064 6.4919 45 1 1.1260 1.4417 6.7728 46 1 3.2476 1.2064 5.0131 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000487971627.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:14 Heat of formation + Delta-G solvation = -161.360265 kcal Electronic energy + Delta-G solvation = -29686.368550 eV Core-core repulsion = 25540.624958 eV Total energy + Delta-G solvation = -4145.743591 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.08528 -40.97663 -39.33190 -38.47530 -37.71540 -36.53971 -35.59324 -33.33573 -31.53393 -31.20569 -30.10924 -28.59615 -27.92050 -27.18784 -26.20773 -24.82039 -22.89135 -22.68992 -21.27665 -20.68491 -19.51559 -18.81052 -18.02899 -17.82174 -17.59650 -17.07775 -17.00283 -16.73640 -16.61968 -16.35067 -15.96441 -15.51216 -15.37721 -14.98536 -14.69674 -14.56076 -14.32679 -14.22101 -14.21360 -13.76537 -13.44229 -13.10388 -12.97764 -12.90726 -12.88707 -12.78898 -12.58076 -12.50294 -12.34630 -12.19757 -12.16051 -11.79130 -11.71431 -11.48276 -11.41229 -11.05265 -10.79009 -10.33107 -10.10476 -9.43772 -9.34607 -8.65074 -6.36101 0.43795 1.04278 1.11474 1.35528 1.47537 1.50475 1.51946 2.15207 2.20167 2.38188 2.75483 2.83010 3.32102 3.70665 3.78628 3.88958 4.05061 4.19176 4.30705 4.35887 4.37163 4.40016 4.46658 4.50467 4.51910 4.61757 4.63970 4.68790 4.73701 4.74303 4.78495 4.88108 4.95523 5.10813 5.21222 5.26102 5.34870 5.42282 5.54141 5.57553 5.90431 5.96543 6.08432 6.11370 6.32097 6.55161 6.69144 6.75729 6.89976 6.97731 7.40452 8.31097 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.018166 B = 0.002923 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.008948 B = 9576.882915 C =10089.610512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.398 6.398 3 C 0.042 3.958 4 C 0.198 3.802 5 C -0.170 4.170 6 C -0.112 4.112 7 C 0.474 3.526 8 O -0.525 6.525 9 O -0.357 6.357 10 C 0.028 3.972 11 N -0.698 5.698 12 C 0.570 3.430 13 O -0.578 6.578 14 C -0.137 4.137 15 C -0.194 4.194 16 C -0.096 4.096 17 C -0.218 4.218 18 C 0.065 3.935 19 C -0.499 4.499 20 H 0.083 0.917 21 C 0.030 3.970 22 N -0.825 5.825 23 Si 0.981 3.019 24 H -0.261 1.261 25 H -0.273 1.273 26 H -0.252 1.252 27 C -0.131 4.131 28 H 0.023 0.977 29 H 0.053 0.947 30 H 0.104 0.896 31 H 0.033 0.967 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.047 0.953 36 H 0.148 0.852 37 H 0.136 0.864 38 H 0.063 0.937 39 H 0.132 0.868 40 H 0.060 0.940 41 H 0.414 0.586 42 H 0.139 0.861 43 H 0.139 0.861 44 H 0.107 0.893 45 H 0.285 0.715 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.391 -1.924 -20.880 21.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.317 6.317 3 C -0.035 4.035 4 C 0.112 3.888 5 C -0.228 4.228 6 C -0.149 4.149 7 C 0.319 3.681 8 O -0.415 6.415 9 O -0.273 6.273 10 C -0.065 4.065 11 N -0.352 5.352 12 C 0.360 3.640 13 O -0.459 6.459 14 C -0.140 4.140 15 C -0.214 4.214 16 C -0.114 4.114 17 C -0.238 4.238 18 C 0.063 3.937 19 C -0.528 4.528 20 H 0.101 0.899 21 C -0.185 4.185 22 N -0.451 5.451 23 Si 0.801 3.199 24 H -0.185 1.185 25 H -0.198 1.198 26 H -0.176 1.176 27 C -0.151 4.151 28 H 0.041 0.959 29 H 0.072 0.928 30 H 0.122 0.878 31 H 0.051 0.949 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.108 0.892 35 H 0.066 0.934 36 H 0.165 0.835 37 H 0.153 0.847 38 H 0.082 0.918 39 H 0.150 0.850 40 H 0.079 0.921 41 H 0.253 0.747 42 H 0.157 0.843 43 H 0.157 0.843 44 H 0.125 0.875 45 H 0.095 0.905 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.642 -0.960 -20.804 20.993 hybrid contribution -0.743 0.753 0.991 1.449 sum 1.900 -0.207 -19.813 19.905 Atomic orbital electron populations 1.22831 0.80286 1.03704 0.99766 1.87741 1.20675 1.27783 1.95505 1.23213 0.93868 0.85074 1.01366 1.19993 0.91793 0.91721 0.85287 1.22362 1.01171 0.95629 1.03639 1.21514 1.06362 1.00301 0.86744 1.23443 0.75703 0.84279 0.84723 1.90589 1.38660 1.26699 1.85546 1.86492 1.72701 1.52445 1.15680 1.23562 1.00491 0.94418 0.88039 1.45564 1.58611 1.27297 1.03706 1.18560 0.77664 0.84232 0.83565 1.90629 1.42102 1.27195 1.85987 1.19798 1.03861 0.97860 0.92488 1.20881 1.05365 0.95973 0.99169 1.20929 0.99168 0.99373 0.91950 1.21401 1.07953 0.97384 0.97061 1.17944 0.91125 0.90983 0.93618 1.19823 1.11475 1.27762 0.93744 0.89881 1.26836 0.93721 0.95549 1.02421 1.69894 1.07533 1.30590 1.37069 0.85271 0.78501 0.78688 0.77407 1.18514 1.19809 1.17573 1.21426 1.02190 1.00042 0.91484 0.95869 0.92813 0.87806 0.94897 0.90177 0.90569 0.89222 0.93397 0.83475 0.84661 0.91785 0.85003 0.92139 0.74707 0.84316 0.84325 0.87513 0.90469 0.88465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 11.01 113.37 1.25 2.06 16 2 O -0.40 -12.59 10.00 -148.98 -1.49 -14.08 16 3 C 0.04 1.38 4.29 71.98 0.31 1.69 16 4 C 0.20 5.54 0.58 3.60 0.00 5.55 16 5 C -0.17 -5.04 8.10 71.98 0.58 -4.45 16 6 C -0.11 -2.04 4.89 29.85 0.15 -1.89 16 7 C 0.47 9.59 7.34 71.23 0.52 10.12 16 8 O -0.52 -13.45 11.11 21.98 0.24 -13.21 16 9 O -0.36 -5.89 10.57 -51.41 -0.54 -6.44 16 10 C 0.03 0.32 10.56 113.37 1.20 1.52 16 11 N -0.70 -21.87 4.82 -425.73 -2.05 -23.92 16 12 C 0.57 24.86 7.19 86.80 0.62 25.49 16 13 O -0.58 -29.62 12.59 -3.85 -0.05 -29.67 16 14 C -0.14 -6.47 5.87 -20.13 -0.12 -6.59 16 15 C -0.19 -7.53 9.55 22.70 0.22 -7.31 16 16 C -0.10 -3.79 10.01 22.18 0.22 -3.56 16 17 C -0.22 -10.24 9.78 22.77 0.22 -10.02 16 18 C 0.07 3.60 5.57 -21.32 -0.12 3.48 16 19 C -0.50 -27.51 9.05 23.47 0.21 -27.30 16 20 H 0.08 4.31 7.91 -2.91 -0.02 4.29 16 21 C 0.03 1.57 5.14 85.26 0.44 2.01 16 22 N -0.83 -46.89 10.95 21.83 0.24 -46.65 16 23 Si 0.98 40.37 29.60 68.60 2.03 42.40 16 24 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 25 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 26 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 27 C -0.13 -7.33 8.24 23.01 0.19 -7.14 16 28 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.03 1.36 6.32 -2.39 -0.02 1.35 16 32 H 0.08 2.50 5.42 -2.38 -0.01 2.48 16 33 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.09 2.54 5.52 -2.39 -0.01 2.53 16 35 H 0.05 1.80 6.15 -2.39 -0.01 1.79 16 36 H 0.15 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.14 2.16 7.82 -2.38 -0.02 2.14 16 38 H 0.06 0.74 8.13 -2.39 -0.02 0.72 16 39 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.06 0.74 8.13 -2.39 -0.02 0.72 16 41 H 0.41 10.15 6.49 -92.70 -0.60 9.55 16 42 H 0.14 3.97 6.38 -2.91 -0.02 3.95 16 43 H 0.14 4.21 8.06 -2.91 -0.02 4.18 16 44 H 0.11 4.64 8.06 -2.91 -0.02 4.61 16 45 H 0.28 15.02 8.30 -92.71 -0.77 14.25 16 46 H 0.10 6.09 5.74 -2.91 -0.02 6.07 16 Total: -1.00 -74.59 375.42 4.69 -69.90 By element: Atomic # 1 Polarization: 37.62 SS G_CDS: 0.41 Total: 38.03 kcal Atomic # 6 Polarization: -22.27 SS G_CDS: 5.90 Total: -16.37 kcal Atomic # 7 Polarization: -68.76 SS G_CDS: -1.81 Total: -70.57 kcal Atomic # 8 Polarization: -61.55 SS G_CDS: -1.84 Total: -63.39 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 2.03 Total: 42.40 kcal Total: -74.59 4.69 -69.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487971627.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.459 kcal (2) G-P(sol) polarization free energy of solvation -74.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds