Wall clock time and date at job start Tue Mar 31 2020 19:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35958 * 117.00198 * 2 1 4 4 C 1.38072 * 119.99983 * 359.97438 * 3 2 1 5 5 C 1.39978 * 119.83631 * 179.97438 * 4 3 2 6 6 C 1.46972 * 120.07307 * 179.97438 * 5 4 3 7 7 C 1.35027 * 119.99291 * 136.93045 * 6 5 4 8 8 C 1.46256 * 120.00700 * 346.76870 * 7 6 5 9 9 O 1.21722 * 119.99491 * 353.56842 * 8 7 6 10 10 N 1.34769 * 120.00217 * 173.56741 * 8 7 6 11 11 O 1.41601 * 119.99817 * 180.02562 * 10 8 7 12 12 C 1.42903 * 113.99987 * 179.97438 * 11 10 8 13 13 C 1.52994 * 109.47175 * 179.97438 * 12 11 10 14 14 C 1.53002 * 109.47222 * 175.00357 * 13 12 11 15 15 C 1.53004 * 109.47673 * 295.00553 * 13 12 11 16 16 C 1.40026 * 119.84389 * 0.25491 * 5 4 3 17 17 C 1.37649 * 119.99801 * 359.49004 * 16 5 4 18 18 C 1.39047 * 120.15987 * 0.51015 * 17 16 5 19 19 O 1.35617 * 119.92072 * 179.76683 * 18 17 16 20 20 C 1.34761 * 116.99762 * 355.26820 * 19 18 17 21 21 H 1.08004 * 120.00273 * 5.03607 * 20 19 18 22 22 C 1.38710 * 120.00408 * 185.03180 * 20 19 18 23 23 N 1.31515 * 120.00161 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 119.99423 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.47499 * 90.00288 * 24 22 20 26 26 H 1.48508 * 109.47025 * 209.99794 * 24 22 20 27 27 H 1.48494 * 109.47482 * 329.99654 * 24 22 20 28 28 H 1.09002 * 109.47089 * 300.00328 * 1 2 3 29 29 H 1.09002 * 109.47046 * 59.99525 * 1 2 3 30 30 H 1.09000 * 109.47209 * 180.02562 * 1 2 3 31 31 H 1.08002 * 120.08320 * 359.95967 * 4 3 2 32 32 H 1.07992 * 120.00092 * 316.92600 * 6 5 4 33 33 H 1.08002 * 119.99738 * 166.49693 * 7 6 5 34 34 H 0.96999 * 120.00121 * 0.02562 * 10 8 7 35 35 H 1.08997 * 109.47409 * 300.00836 * 12 11 10 36 36 H 1.09007 * 109.46740 * 60.00219 * 12 11 10 37 37 H 1.08999 * 109.47294 * 55.00521 * 13 12 11 38 38 H 1.09005 * 109.47092 * 60.00280 * 14 13 12 39 39 H 1.09003 * 109.47274 * 180.02562 * 14 13 12 40 40 H 1.09000 * 109.47103 * 300.00632 * 14 13 12 41 41 H 1.08997 * 109.47050 * 59.99674 * 15 13 12 42 42 H 1.08989 * 109.47452 * 179.97438 * 15 13 12 43 43 H 1.09005 * 109.46929 * 299.99896 * 15 13 12 44 44 H 1.08005 * 119.99603 * 179.74687 * 16 5 4 45 45 H 1.08005 * 119.91386 * 180.23568 * 17 16 5 46 46 H 0.97007 * 119.99464 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2943 2.3694 -0.0005 5 6 1.9334 3.6147 0.0000 6 6 1.1381 4.8507 -0.0011 7 6 1.4903 5.8807 0.7977 8 6 2.4703 5.6774 1.8641 9 8 2.8808 4.5577 2.1079 10 7 2.9188 6.7296 2.5768 11 8 3.8681 6.5327 3.6089 12 6 4.2546 7.7337 4.2800 13 6 5.2768 7.4029 5.3692 14 6 5.7836 8.6996 6.0037 15 6 4.6164 6.5344 6.4419 16 6 3.3321 3.6802 -0.0043 17 6 4.0753 2.5216 0.0015 18 6 3.4405 1.2844 0.0010 19 8 4.1775 0.1460 0.0020 20 6 5.5146 0.2827 -0.0956 21 1 5.9588 1.2672 -0.0880 22 6 6.3206 -0.8408 -0.2057 23 7 7.6255 -0.7073 -0.3004 24 14 5.5523 -2.5434 -0.2194 25 1 5.2414 -2.9351 -1.6177 26 1 6.5038 -3.5206 0.3683 27 1 4.3012 -2.5285 0.5803 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2157 2.3144 -0.0016 32 1 0.2721 4.9350 -0.6409 33 1 1.0515 6.8559 0.6464 34 1 2.5914 7.6218 2.3828 35 1 4.6979 8.4242 3.5626 36 1 3.3772 8.1949 4.7336 37 1 6.1147 6.8622 4.9291 38 1 4.9458 9.2404 6.4440 39 1 6.5123 8.4640 6.7794 40 1 6.2541 9.3184 5.2396 41 1 4.2554 5.6107 5.9898 42 1 5.3448 6.2985 7.2175 43 1 3.7786 7.0752 6.8821 44 1 3.8278 4.6398 -0.0080 45 1 5.1541 2.5736 0.0020 46 1 8.1890 -1.4931 -0.3778 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492205184.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:04 Heat of formation + Delta-G solvation = -40.391310 kcal Electronic energy + Delta-G solvation = -28606.653388 eV Core-core repulsion = 24466.155404 eV Total energy + Delta-G solvation = -4140.497984 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.86354 -39.20383 -37.92319 -37.61973 -36.19238 -35.15290 -33.02485 -32.31033 -31.69038 -29.52529 -28.62265 -27.42352 -26.60938 -26.19987 -25.20350 -23.35168 -21.58121 -21.25059 -20.63594 -19.32461 -18.17088 -17.88575 -17.63744 -16.73995 -16.25881 -16.03203 -15.38594 -15.17905 -15.02638 -14.59181 -14.33614 -14.21887 -13.99766 -13.79225 -13.59722 -13.52825 -13.27465 -13.05411 -12.85296 -12.65211 -12.43458 -12.20537 -12.11542 -11.63801 -11.50129 -11.45166 -11.38741 -11.05338 -11.04030 -10.82902 -10.79288 -10.66631 -10.48012 -10.14713 -9.57278 -9.35711 -9.18202 -8.78234 -8.71129 -7.78841 -6.77186 -6.37723 -3.97697 1.08797 1.94859 2.27876 2.57394 3.29664 3.33312 3.53009 3.57335 3.98677 4.32257 4.33798 4.49511 4.54075 4.57428 4.82761 4.83185 4.92101 5.05476 5.08453 5.15279 5.16330 5.28949 5.39434 5.43146 5.48331 5.53167 5.56468 5.61922 5.64258 5.79135 5.79817 5.82922 5.99210 6.08908 6.12936 6.19902 6.37883 6.44813 6.62908 6.89059 6.97163 7.11069 7.37023 7.47541 7.58793 7.73067 8.01097 8.21922 8.54734 8.97432 9.62207 10.69114 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.009985 B = 0.003159 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2803.559292 B = 8860.470847 C =10788.313125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.310 6.310 3 C 0.039 3.961 4 C -0.134 4.134 5 C -0.153 4.153 6 C 0.031 3.969 7 C -0.252 4.252 8 C 0.549 3.451 9 O -0.491 6.491 10 N -0.605 5.605 11 O -0.141 6.141 12 C 0.037 3.963 13 C -0.090 4.090 14 C -0.144 4.144 15 C -0.149 4.149 16 C -0.013 4.013 17 C -0.207 4.207 18 C 0.160 3.840 19 O -0.198 6.198 20 C -0.384 4.384 21 H 0.108 0.892 22 C 0.065 3.935 23 N -0.875 5.875 24 Si 0.904 3.096 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.255 1.255 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.089 0.911 31 H 0.120 0.880 32 H 0.129 0.871 33 H 0.127 0.873 34 H 0.400 0.600 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.084 0.916 38 H 0.056 0.944 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.066 0.934 42 H 0.057 0.943 43 H 0.052 0.948 44 H 0.103 0.897 45 H 0.138 0.862 46 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.395 18.925 5.937 23.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.225 6.225 3 C -0.005 4.005 4 C -0.154 4.154 5 C -0.154 4.154 6 C 0.011 3.989 7 C -0.274 4.274 8 C 0.339 3.661 9 O -0.364 6.364 10 N -0.308 5.308 11 O -0.145 6.145 12 C -0.041 4.041 13 C -0.110 4.110 14 C -0.201 4.201 15 C -0.206 4.206 16 C -0.032 4.032 17 C -0.226 4.226 18 C 0.106 3.894 19 O -0.102 6.102 20 C -0.460 4.460 21 H 0.126 0.874 22 C -0.139 4.139 23 N -0.512 5.512 24 Si 0.729 3.271 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.178 1.178 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.108 0.892 31 H 0.137 0.863 32 H 0.147 0.853 33 H 0.145 0.855 34 H 0.239 0.761 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.103 0.897 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.121 0.879 45 H 0.156 0.844 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.739 17.327 6.176 21.822 hybrid contribution -0.410 0.474 0.134 0.641 sum -12.149 17.802 6.310 22.457 Atomic orbital electron populations 1.22869 0.80399 1.02783 1.00346 1.86163 1.19446 1.26644 1.90244 1.17919 0.89207 0.84404 1.08993 1.20675 0.98095 0.90854 1.05731 1.18103 0.92910 0.91353 1.13065 1.22311 0.93892 0.91187 0.91480 1.22337 1.04724 1.00474 0.99816 1.18532 0.81605 0.83876 0.82100 1.91035 1.56222 1.22270 1.66876 1.47687 1.41201 1.10536 1.31395 1.90629 1.54165 1.26759 1.42923 1.23063 0.98082 0.88247 0.94679 1.21067 0.97651 0.97688 0.94609 1.21783 1.01246 0.96221 1.00864 1.21838 1.00347 1.00382 0.98043 1.20591 0.91884 0.96882 0.93797 1.20863 1.00920 0.90614 1.10203 1.18556 0.87672 0.86910 0.96266 1.83580 1.20124 1.27443 1.79007 1.20873 0.77205 0.97089 1.50792 0.87440 1.24473 0.94510 0.99477 0.95471 1.69638 1.02980 1.31638 1.46960 0.86184 0.79880 0.81677 0.79347 1.19834 1.20851 1.17832 0.93558 0.93526 0.89235 0.86254 0.85339 0.85514 0.76121 0.92351 0.92454 0.89714 0.92465 0.91633 0.92381 0.91472 0.92362 0.92845 0.87860 0.84402 0.91006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.81 101.05 0.99 1.45 16 2 O -0.31 -6.63 10.28 -34.22 -0.35 -6.98 16 3 C 0.04 0.88 6.70 -39.13 -0.26 0.61 16 4 C -0.13 -2.49 8.77 -38.99 -0.34 -2.83 16 5 C -0.15 -2.76 4.49 -105.04 -0.47 -3.23 16 6 C 0.03 0.40 9.80 -37.19 -0.36 0.04 16 7 C -0.25 -2.97 9.87 -37.50 -0.37 -3.34 16 8 C 0.55 8.49 6.92 -13.04 -0.09 8.40 16 9 O -0.49 -10.30 12.77 -12.96 -0.17 -10.47 16 10 N -0.60 -7.53 6.39 30.16 0.19 -7.33 16 11 O -0.14 -2.00 10.64 -29.60 -0.32 -2.31 16 12 C 0.04 0.35 5.61 37.15 0.21 0.56 16 13 C -0.09 -0.82 3.16 -90.62 -0.29 -1.10 16 14 C -0.14 -0.93 9.19 37.16 0.34 -0.59 16 15 C -0.15 -1.44 9.09 37.16 0.34 -1.10 16 16 C -0.01 -0.26 6.68 -39.13 -0.26 -0.53 16 17 C -0.21 -4.92 9.14 -39.50 -0.36 -5.28 16 18 C 0.16 4.06 6.67 -38.77 -0.26 3.80 16 19 O -0.20 -5.64 8.35 -13.96 -0.12 -5.75 16 20 C -0.38 -11.38 9.94 30.91 0.31 -11.07 16 21 H 0.11 3.24 5.41 -52.48 -0.28 2.95 16 22 C 0.06 1.88 5.49 -17.51 -0.10 1.79 16 23 N -0.88 -25.96 13.96 55.48 0.77 -25.19 16 24 Si 0.90 22.78 28.62 -169.99 -4.86 17.92 16 25 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.25 -6.59 7.11 56.52 0.40 -6.18 16 28 H 0.05 0.61 7.66 -51.93 -0.40 0.21 16 29 H 0.05 0.58 7.66 -51.93 -0.40 0.19 16 30 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.12 1.78 6.28 -52.49 -0.33 1.45 16 32 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.40 3.17 8.52 -40.82 -0.35 2.82 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.45 8.14 -51.92 -0.42 0.02 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.07 0.82 7.82 -51.93 -0.41 0.41 16 42 H 0.06 0.50 8.14 -51.94 -0.42 0.08 16 43 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.10 1.97 7.10 -52.48 -0.37 1.59 16 45 H 0.14 3.42 5.61 -52.48 -0.29 3.13 16 46 H 0.28 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 387.43 15.07 5.84 5.84 Total: -1.00 -36.55 387.43 -6.60 -43.15 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -6.62 Total: 3.54 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: -0.98 Total: -12.42 kcal Atomic # 7 Polarization: -33.49 SS G_CDS: 0.97 Total: -32.52 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -0.95 Total: -25.51 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -4.86 Total: 17.92 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.55 -6.60 -43.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492205184.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.761 kcal (2) G-P(sol) polarization free energy of solvation -36.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds