Wall clock time and date at job start Tue Mar 31 2020 19:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35958 * 117.00198 * 2 1 4 4 C 1.38072 * 119.99983 * 359.97438 * 3 2 1 5 5 C 1.39978 * 119.83631 * 179.97438 * 4 3 2 6 6 C 1.46972 * 120.07307 * 179.97438 * 5 4 3 7 7 C 1.35027 * 119.99291 * 136.93045 * 6 5 4 8 8 C 1.46256 * 120.00700 * 346.76870 * 7 6 5 9 9 O 1.21722 * 119.99491 * 353.56842 * 8 7 6 10 10 N 1.34769 * 120.00217 * 173.56741 * 8 7 6 11 11 O 1.41601 * 119.99817 * 180.02562 * 10 8 7 12 12 C 1.42903 * 113.99987 * 179.97438 * 11 10 8 13 13 C 1.52994 * 109.47175 * 179.97438 * 12 11 10 14 14 C 1.53002 * 109.47222 * 175.00357 * 13 12 11 15 15 C 1.53004 * 109.47673 * 295.00553 * 13 12 11 16 16 C 1.40026 * 119.84389 * 0.25491 * 5 4 3 17 17 C 1.37649 * 119.99801 * 359.49004 * 16 5 4 18 18 C 1.39047 * 120.15987 * 0.51015 * 17 16 5 19 19 O 1.35617 * 119.92072 * 179.76683 * 18 17 16 20 20 C 1.34761 * 116.99762 * 355.26820 * 19 18 17 21 21 H 1.08004 * 120.00273 * 5.03607 * 20 19 18 22 22 C 1.38710 * 120.00408 * 185.03180 * 20 19 18 23 23 N 1.31515 * 120.00161 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 119.99423 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.47499 * 90.00288 * 24 22 20 26 26 H 1.48508 * 109.47025 * 209.99794 * 24 22 20 27 27 H 1.48494 * 109.47482 * 329.99654 * 24 22 20 28 28 H 1.09002 * 109.47089 * 300.00328 * 1 2 3 29 29 H 1.09002 * 109.47046 * 59.99525 * 1 2 3 30 30 H 1.09000 * 109.47209 * 180.02562 * 1 2 3 31 31 H 1.08002 * 120.08320 * 359.95967 * 4 3 2 32 32 H 1.07992 * 120.00092 * 316.92600 * 6 5 4 33 33 H 1.08002 * 119.99738 * 166.49693 * 7 6 5 34 34 H 0.96999 * 120.00121 * 0.02562 * 10 8 7 35 35 H 1.08997 * 109.47409 * 300.00836 * 12 11 10 36 36 H 1.09007 * 109.46740 * 60.00219 * 12 11 10 37 37 H 1.08999 * 109.47294 * 55.00521 * 13 12 11 38 38 H 1.09005 * 109.47092 * 60.00280 * 14 13 12 39 39 H 1.09003 * 109.47274 * 180.02562 * 14 13 12 40 40 H 1.09000 * 109.47103 * 300.00632 * 14 13 12 41 41 H 1.08997 * 109.47050 * 59.99674 * 15 13 12 42 42 H 1.08989 * 109.47452 * 179.97438 * 15 13 12 43 43 H 1.09005 * 109.46929 * 299.99896 * 15 13 12 44 44 H 1.08005 * 119.99603 * 179.74687 * 16 5 4 45 45 H 1.08005 * 119.91386 * 180.23568 * 17 16 5 46 46 H 0.97007 * 119.99464 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2943 2.3694 -0.0005 5 6 1.9334 3.6147 0.0000 6 6 1.1381 4.8507 -0.0011 7 6 1.4903 5.8807 0.7977 8 6 2.4703 5.6774 1.8641 9 8 2.8808 4.5577 2.1079 10 7 2.9188 6.7296 2.5768 11 8 3.8681 6.5327 3.6089 12 6 4.2546 7.7337 4.2800 13 6 5.2768 7.4029 5.3692 14 6 5.7836 8.6996 6.0037 15 6 4.6164 6.5344 6.4419 16 6 3.3321 3.6802 -0.0043 17 6 4.0753 2.5216 0.0015 18 6 3.4405 1.2844 0.0010 19 8 4.1775 0.1460 0.0020 20 6 5.5146 0.2827 -0.0956 21 1 5.9588 1.2672 -0.0880 22 6 6.3206 -0.8408 -0.2057 23 7 7.6255 -0.7073 -0.3004 24 14 5.5523 -2.5434 -0.2194 25 1 5.2414 -2.9351 -1.6177 26 1 6.5038 -3.5206 0.3683 27 1 4.3012 -2.5285 0.5803 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2157 2.3144 -0.0016 32 1 0.2721 4.9350 -0.6409 33 1 1.0515 6.8559 0.6464 34 1 2.5914 7.6218 2.3828 35 1 4.6979 8.4242 3.5626 36 1 3.3772 8.1949 4.7336 37 1 6.1147 6.8622 4.9291 38 1 4.9458 9.2404 6.4440 39 1 6.5123 8.4640 6.7794 40 1 6.2541 9.3184 5.2396 41 1 4.2554 5.6107 5.9898 42 1 5.3448 6.2985 7.2175 43 1 3.7786 7.0752 6.8821 44 1 3.8278 4.6398 -0.0080 45 1 5.1541 2.5736 0.0020 46 1 8.1890 -1.4931 -0.3778 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492205184.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:03 Heat of formation + Delta-G solvation = -65.973874 kcal Electronic energy + Delta-G solvation = -28607.762731 eV Core-core repulsion = 24466.155404 eV Total energy + Delta-G solvation = -4141.607327 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.42308 -40.54040 -39.35466 -38.93185 -37.68006 -36.08191 -34.62052 -34.11284 -32.87717 -31.15755 -30.09308 -28.11314 -27.86662 -27.31604 -26.90809 -24.68101 -23.23230 -22.69878 -21.50587 -20.47431 -19.87349 -19.55326 -18.91025 -18.18451 -17.59353 -17.03669 -16.94488 -16.66264 -16.34209 -16.06689 -15.63848 -15.42224 -15.35510 -15.30257 -15.03815 -14.84888 -14.61681 -14.32143 -14.08055 -13.97756 -13.75021 -13.48573 -13.14272 -13.04753 -12.86557 -12.77323 -12.58972 -12.35268 -12.17852 -12.07642 -12.05260 -11.86587 -11.80040 -11.61510 -11.46337 -10.99082 -10.78777 -10.35892 -9.89254 -9.38735 -8.52504 -8.45713 -6.19958 -0.12850 0.59656 0.96056 1.05514 1.26669 1.33286 1.51700 2.28218 2.40702 2.55759 2.76897 3.04461 3.10990 3.52819 3.76709 3.80864 3.85623 3.97949 4.06458 4.13126 4.19776 4.36882 4.39034 4.48261 4.51145 4.55289 4.57417 4.59887 4.70195 4.74248 4.75218 4.90495 4.93160 4.95676 5.06154 5.15924 5.21562 5.29582 5.34506 5.39954 5.50934 5.58805 5.75305 5.84568 5.88144 6.06451 6.49915 6.64888 6.81814 7.44534 7.59781 8.59527 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.009985 B = 0.003159 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2803.559292 B = 8860.470847 C =10788.313125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.345 6.345 3 C 0.039 3.961 4 C -0.133 4.133 5 C -0.116 4.116 6 C 0.012 3.988 7 C -0.212 4.212 8 C 0.532 3.468 9 O -0.559 6.559 10 N -0.585 5.585 11 O -0.182 6.182 12 C 0.033 3.967 13 C -0.093 4.093 14 C -0.136 4.136 15 C -0.147 4.147 16 C -0.029 4.029 17 C -0.218 4.218 18 C 0.101 3.899 19 O -0.235 6.235 20 C -0.400 4.400 21 H 0.077 0.923 22 C 0.012 3.988 23 N -0.921 5.921 24 Si 0.970 3.030 25 H -0.262 1.262 26 H -0.262 1.262 27 H -0.270 1.270 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.111 0.889 31 H 0.170 0.830 32 H 0.188 0.812 33 H 0.191 0.809 34 H 0.425 0.575 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.031 0.969 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.112 0.888 45 H 0.105 0.895 46 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.240 22.580 5.934 29.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.261 6.261 3 C -0.006 4.006 4 C -0.151 4.151 5 C -0.116 4.116 6 C -0.007 4.007 7 C -0.232 4.232 8 C 0.324 3.676 9 O -0.437 6.437 10 N -0.289 5.289 11 O -0.188 6.188 12 C -0.043 4.043 13 C -0.113 4.113 14 C -0.194 4.194 15 C -0.204 4.204 16 C -0.047 4.047 17 C -0.237 4.237 18 C 0.052 3.948 19 O -0.142 6.142 20 C -0.476 4.476 21 H 0.094 0.906 22 C -0.186 4.186 23 N -0.562 5.562 24 Si 0.792 3.208 25 H -0.187 1.187 26 H -0.186 1.186 27 H -0.195 1.195 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.129 0.871 31 H 0.187 0.813 32 H 0.205 0.795 33 H 0.208 0.792 34 H 0.268 0.732 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.050 0.950 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.130 0.870 45 H 0.123 0.877 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.636 21.100 6.180 27.571 hybrid contribution 0.748 -0.101 0.283 0.806 sum -15.888 20.999 6.463 27.114 Atomic orbital electron populations 1.23307 0.76806 1.05095 1.02290 1.86118 1.23238 1.26562 1.90147 1.18187 0.88258 0.86255 1.07882 1.21230 1.00291 0.89471 1.04111 1.18776 0.92239 0.94020 1.06612 1.22685 0.95440 0.88494 0.94112 1.22880 1.01185 1.02540 0.96634 1.19479 0.81824 0.83430 0.82890 1.91043 1.58807 1.25045 1.68845 1.47515 1.39906 1.11312 1.30163 1.90639 1.54677 1.29886 1.43562 1.23313 0.99060 0.87067 0.94877 1.21127 0.96905 0.98824 0.94485 1.21736 1.01853 0.94733 1.01039 1.21818 1.01134 0.99175 0.98305 1.20716 0.93493 0.95717 0.94782 1.20834 0.99863 0.92141 1.10895 1.19141 0.89468 0.86670 0.99521 1.83521 1.18938 1.28757 1.83013 1.20756 0.78643 0.96286 1.51917 0.90558 1.25249 0.94960 1.02986 0.95413 1.69715 1.03997 1.32804 1.49667 0.85229 0.78468 0.77494 0.79565 1.18679 1.18622 1.19481 0.91913 0.90895 0.87098 0.81296 0.79488 0.79208 0.73208 0.90575 0.90147 0.92049 0.90942 0.91342 0.91504 0.94951 0.91718 0.91227 0.86987 0.87683 0.90469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 9.81 113.37 1.11 1.61 16 2 O -0.35 -14.73 10.28 -79.10 -0.81 -15.55 16 3 C 0.04 1.76 6.70 22.56 0.15 1.91 16 4 C -0.13 -4.55 8.77 22.65 0.20 -4.35 16 5 C -0.12 -3.86 4.49 -20.13 -0.09 -3.95 16 6 C 0.01 0.23 9.80 23.82 0.23 0.46 16 7 C -0.21 -3.64 9.87 23.62 0.23 -3.41 16 8 C 0.53 14.96 6.92 86.33 0.60 15.56 16 9 O -0.56 -23.42 12.77 12.92 0.16 -23.25 16 10 N -0.59 -12.87 6.39 -176.69 -1.13 -14.00 16 11 O -0.18 -5.07 10.64 -21.45 -0.23 -5.30 16 12 C 0.03 0.57 5.61 71.98 0.40 0.97 16 13 C -0.09 -1.64 3.16 -10.79 -0.03 -1.67 16 14 C -0.14 -1.49 9.19 71.98 0.66 -0.82 16 15 C -0.15 -2.83 9.09 71.98 0.65 -2.18 16 16 C -0.03 -1.19 6.68 22.56 0.15 -1.04 16 17 C -0.22 -11.33 9.14 22.32 0.20 -11.13 16 18 C 0.10 5.56 6.67 22.80 0.15 5.71 16 19 O -0.23 -14.60 8.35 -6.60 -0.06 -14.66 16 20 C -0.40 -26.14 9.94 67.93 0.68 -25.46 16 21 H 0.08 5.24 5.41 -2.91 -0.02 5.23 16 22 C 0.01 0.77 5.49 84.85 0.47 1.24 16 23 N -0.92 -58.66 13.96 21.62 0.30 -58.36 16 24 Si 0.97 49.98 28.62 68.60 1.96 51.94 16 25 H -0.26 -12.82 7.11 99.48 0.71 -12.11 16 26 H -0.26 -12.35 7.11 99.48 0.71 -11.64 16 27 H -0.27 -14.40 7.11 99.48 0.71 -13.69 16 28 H 0.06 1.43 7.66 -2.39 -0.02 1.41 16 29 H 0.07 1.52 7.66 -2.39 -0.02 1.50 16 30 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.17 4.06 6.28 -2.91 -0.02 4.05 16 32 H 0.19 1.74 8.06 -2.91 -0.02 1.72 16 33 H 0.19 1.02 8.06 -2.91 -0.02 0.99 16 34 H 0.42 4.73 8.52 -92.71 -0.79 3.94 16 35 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 37 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 39 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.03 0.83 7.82 -2.39 -0.02 0.81 16 42 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 44 H 0.11 4.34 7.10 -2.91 -0.02 4.32 16 45 H 0.11 5.99 5.61 -2.91 -0.02 5.98 16 46 H 0.29 16.57 8.31 -92.70 -0.77 15.80 16 Total: -1.00 -93.90 387.43 6.19 -87.71 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: 0.21 Total: 18.00 kcal Atomic # 6 Polarization: -32.32 SS G_CDS: 5.77 Total: -26.55 kcal Atomic # 7 Polarization: -71.53 SS G_CDS: -0.83 Total: -72.36 kcal Atomic # 8 Polarization: -57.82 SS G_CDS: -0.93 Total: -58.75 kcal Atomic # 14 Polarization: 49.98 SS G_CDS: 1.96 Total: 51.94 kcal Total: -93.90 6.19 -87.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492205184.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.741 kcal (2) G-P(sol) polarization free energy of solvation -93.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds