Wall clock time and date at job start Tue Mar 31 2020 19:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47177 * 2 1 4 4 C 1.50698 * 109.47210 * 239.99720 * 2 1 3 5 5 H 1.08001 * 120.00351 * 240.00148 * 4 2 1 6 6 C 1.37887 * 119.99947 * 59.99880 * 4 2 1 7 7 N 1.31517 * 119.99757 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99830 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47415 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46779 * 120.00564 * 8 6 4 11 11 H 1.48504 * 109.46806 * 240.00023 * 8 6 4 12 12 C 1.52998 * 109.47073 * 119.99870 * 2 1 3 13 13 O 1.45195 * 109.47381 * 300.00059 * 12 2 1 14 14 C 1.34225 * 117.00420 * 179.97438 * 13 12 2 15 15 O 1.20827 * 119.99894 * 359.97438 * 14 13 12 16 16 C 1.50702 * 120.00387 * 179.97438 * 14 13 12 17 17 C 1.52995 * 109.47279 * 180.02562 * 16 14 13 18 18 N 1.46502 * 109.47041 * 180.02562 * 17 16 14 19 19 C 1.34776 * 119.99814 * 180.02562 * 18 17 16 20 20 O 1.21773 * 120.00237 * 359.97438 * 19 18 17 21 21 C 1.41557 * 119.99762 * 180.27633 * 19 18 17 22 22 C 1.35626 * 119.99616 * 186.06298 * 21 19 18 23 23 C 1.41600 * 120.00628 * 8.85373 * 22 21 19 24 24 C 1.37955 * 126.10479 * 219.80683 * 23 22 21 25 25 C 1.40316 * 106.52697 * 179.84863 * 24 23 22 26 26 C 1.35159 * 107.20837 * 0.40349 * 25 24 23 27 27 O 1.34026 * 109.03199 * 359.74473 * 26 25 24 28 28 H 1.09002 * 109.47209 * 300.00173 * 1 2 3 29 29 H 1.09008 * 109.47201 * 59.99851 * 1 2 3 30 30 H 1.08998 * 109.47222 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46900 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47078 * 299.99730 * 3 2 1 33 33 H 1.08990 * 109.47462 * 60.00151 * 3 2 1 34 34 H 0.97000 * 119.99647 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.47137 * 179.97438 * 12 2 1 36 36 H 1.09006 * 109.46974 * 59.99805 * 12 2 1 37 37 H 1.08994 * 109.47217 * 59.99638 * 16 14 13 38 38 H 1.09005 * 109.46752 * 300.00406 * 16 14 13 39 39 H 1.08999 * 109.47494 * 60.00061 * 17 16 14 40 40 H 1.09002 * 109.47125 * 299.99402 * 17 16 14 41 41 H 0.96997 * 120.00012 * 359.97438 * 18 17 16 42 42 H 1.08002 * 120.00189 * 6.05624 * 21 19 18 43 43 H 1.08012 * 119.99485 * 188.85202 * 22 21 19 44 44 H 1.07994 * 126.73651 * 359.95911 * 24 23 22 45 45 H 1.08004 * 126.39835 * 180.15015 * 25 24 23 46 46 H 1.07997 * 125.48576 * 179.72054 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 3.1454 -2.2878 -3.6037 10 1 1.1660 -1.5868 -4.8160 11 1 3.1466 -0.1875 -4.8165 12 6 2.0400 -0.7212 1.2492 13 8 1.5560 -0.0368 2.4348 14 6 1.9162 -0.5471 3.6228 15 8 2.6125 -1.5334 3.6706 16 6 1.4522 0.1101 4.8972 17 6 1.9991 -0.6636 6.0984 18 7 1.5475 -0.0251 7.3372 19 6 1.9099 -0.5370 8.5301 20 8 2.6124 -1.5305 8.5783 21 6 1.4687 0.0766 9.7271 22 6 1.9312 -0.3620 10.9243 23 6 2.9902 -1.3007 10.9735 24 6 3.0927 -2.3657 11.8444 25 6 4.2929 -3.0222 11.5326 26 6 4.8671 -2.3437 10.5144 27 8 4.0821 -1.3099 10.1806 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 0.7094 1.1617 -3.4845 35 1 3.1299 -0.7216 1.2490 36 1 1.6766 -1.7489 1.2493 37 1 0.3627 0.1103 4.9301 38 1 1.8168 1.1368 4.9301 39 1 3.0886 -0.6633 6.0654 40 1 1.6348 -1.6904 6.0657 41 1 0.9882 0.7665 7.2989 42 1 0.7639 0.8940 9.6870 43 1 1.4917 0.0049 11.8402 44 1 2.3867 -2.6412 12.6138 45 1 4.6867 -3.9028 12.0184 46 1 5.8072 -2.5939 10.0456 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492611176.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:32 Heat of formation + Delta-G solvation = -90.099575 kcal Electronic energy + Delta-G solvation = -27773.998580 eV Core-core repulsion = 23631.345085 eV Total energy + Delta-G solvation = -4142.653496 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.57794 -40.24478 -39.78330 -36.82957 -35.51857 -34.85403 -34.28422 -33.00651 -31.60138 -31.13420 -28.97090 -26.22733 -25.64579 -25.33354 -24.75606 -23.11486 -21.83547 -21.32164 -20.65981 -19.64667 -18.87482 -18.20789 -17.43497 -16.70011 -16.44368 -16.12222 -15.94959 -15.77035 -15.44702 -15.34876 -14.67636 -14.56472 -14.24530 -14.02041 -13.39022 -13.07761 -13.02700 -12.86247 -12.81621 -12.73570 -12.51978 -12.12763 -11.79848 -11.72235 -11.46124 -11.20886 -10.99616 -10.69168 -10.44634 -10.43203 -10.30040 -10.20444 -10.08750 -9.95276 -9.92611 -9.43936 -9.33729 -9.24261 -8.77302 -8.39917 -8.20664 -6.04107 -4.15466 0.26378 1.91548 2.47987 2.53873 2.75434 2.98616 3.21110 3.25604 3.33900 3.37684 3.50603 4.37151 4.41178 4.49372 4.65285 4.80166 4.86325 4.87554 4.99489 5.13024 5.22493 5.37032 5.41901 5.47752 5.68611 5.71740 5.73106 5.84764 6.00885 6.06286 6.08279 6.18706 6.32888 6.44534 6.71883 6.95716 7.01511 7.03394 7.10810 7.12501 7.27422 7.37911 7.59645 7.68410 8.02722 8.04541 8.11407 8.20692 8.37179 8.84695 9.50143 10.97151 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.030109 B = 0.001722 C = 0.001659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.740819 B =16252.132901 C =16876.802209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.069 3.931 3 C -0.129 4.129 4 C -0.511 4.511 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.084 3.916 13 O -0.348 6.348 14 C 0.458 3.542 15 O -0.516 6.516 16 C -0.128 4.128 17 C 0.133 3.867 18 N -0.728 5.728 19 C 0.537 3.463 20 O -0.522 6.522 21 C -0.207 4.207 22 C 0.007 3.993 23 C 0.002 3.998 24 C -0.179 4.179 25 C -0.228 4.228 26 C -0.012 4.012 27 O -0.134 6.134 28 H 0.016 0.984 29 H 0.084 0.916 30 H 0.022 0.978 31 H 0.023 0.977 32 H 0.084 0.916 33 H 0.016 0.984 34 H 0.260 0.740 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.401 0.599 42 H 0.139 0.861 43 H 0.156 0.844 44 H 0.148 0.852 45 H 0.146 0.854 46 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.060 1.442 28.168 28.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.068 3.932 3 C -0.187 4.187 4 C -0.549 4.549 5 H 0.076 0.924 6 C -0.134 4.134 7 N -0.520 5.520 8 Si 0.723 3.277 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.012 3.988 13 O -0.264 6.264 14 C 0.300 3.700 15 O -0.406 6.406 16 C -0.166 4.166 17 C 0.009 3.991 18 N -0.380 5.380 19 C 0.327 3.673 20 O -0.400 6.400 21 C -0.228 4.228 22 C -0.012 4.012 23 C -0.048 4.048 24 C -0.198 4.198 25 C -0.247 4.247 26 C -0.083 4.083 27 O -0.027 6.027 28 H 0.035 0.965 29 H 0.103 0.897 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.103 0.897 33 H 0.035 0.965 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.235 0.765 42 H 0.157 0.843 43 H 0.173 0.827 44 H 0.166 0.834 45 H 0.164 0.836 46 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 0.623 0.762 27.744 27.761 hybrid contribution 0.049 -0.397 -0.921 1.004 sum 0.672 0.366 26.823 26.833 Atomic orbital electron populations 1.21767 0.97295 0.98951 1.00657 1.18265 0.93461 0.93114 0.88338 1.21765 0.98087 0.98163 1.00660 1.20976 1.31885 1.12279 0.89774 0.92437 1.24867 0.94809 0.94933 0.98822 1.69838 1.36399 1.22587 1.23206 0.86479 0.78654 0.79707 0.82832 1.19765 1.20961 1.20955 1.23698 0.98259 0.95819 0.81062 1.86506 1.69081 1.55859 1.14907 1.23123 0.77869 0.82619 0.86400 1.90670 1.35809 1.25762 1.88342 1.21439 1.03923 1.01508 0.89753 1.21042 1.00528 0.96737 0.80790 1.45873 1.54279 1.32060 1.05802 1.17122 0.80944 0.85060 0.84192 1.90908 1.36482 1.25546 1.87020 1.22248 1.04884 1.02882 0.92766 1.20641 0.90849 0.91326 0.98416 1.19573 0.91109 1.00632 0.93518 1.22153 0.99029 0.97037 1.01620 1.21639 0.97512 1.03725 1.01815 1.24198 0.97412 0.88422 0.98262 1.84275 1.27156 1.42744 1.48487 0.96483 0.89725 0.95833 0.95830 0.89726 0.96474 0.92954 0.92461 0.92467 0.87251 0.87248 0.90342 0.90391 0.76515 0.84325 0.82687 0.83429 0.83581 0.78464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 8.11 37.16 0.30 -2.76 16 2 C 0.07 1.67 0.58 -155.66 -0.09 1.58 16 3 C -0.13 -3.07 8.11 37.16 0.30 -2.76 16 4 C -0.51 -13.61 8.01 -34.44 -0.28 -13.88 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.79 5.15 -17.81 -0.09 1.70 16 7 N -0.88 -23.79 9.35 55.43 0.52 -23.27 16 8 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 9 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 C 0.08 1.85 4.26 37.16 0.16 2.01 16 13 O -0.35 -6.68 8.88 -39.24 -0.35 -7.03 16 14 C 0.46 7.62 7.96 36.01 0.29 7.91 16 15 O -0.52 -10.17 15.73 -18.75 -0.29 -10.46 16 16 C -0.13 -1.38 5.93 -27.88 -0.17 -1.55 16 17 C 0.13 1.55 4.96 -4.04 -0.02 1.53 16 18 N -0.73 -6.59 5.55 -63.24 -0.35 -6.94 16 19 C 0.54 5.96 7.36 -14.99 -0.11 5.84 16 20 O -0.52 -7.95 12.41 -19.71 -0.24 -8.19 16 21 C -0.21 -1.53 9.85 -39.25 -0.39 -1.91 16 22 C 0.01 0.05 9.95 -39.23 -0.39 -0.34 16 23 C 0.00 0.02 5.32 -38.40 -0.20 -0.18 16 24 C -0.18 -1.70 10.90 -38.90 -0.42 -2.12 16 25 C -0.23 -2.16 10.87 -39.90 -0.43 -2.59 16 26 C -0.01 -0.13 12.06 29.64 0.36 0.23 16 27 O -0.13 -1.68 7.81 -20.18 -0.16 -1.83 16 28 H 0.02 0.36 7.68 -51.93 -0.40 -0.04 16 29 H 0.08 2.18 6.07 -51.92 -0.32 1.86 16 30 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.08 2.18 6.07 -51.93 -0.32 1.86 16 33 H 0.02 0.36 7.68 -51.93 -0.40 -0.04 16 34 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 35 H 0.06 1.28 8.13 -51.93 -0.42 0.85 16 36 H 0.06 1.27 8.13 -51.93 -0.42 0.85 16 37 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 40 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 41 H 0.40 2.19 8.43 -40.82 -0.34 1.84 16 42 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 43 H 0.16 0.51 8.06 -52.48 -0.42 0.08 16 44 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 45 H 0.15 1.04 8.06 -52.48 -0.42 0.62 16 46 H 0.20 1.41 8.06 -52.49 -0.42 0.98 16 LS Contribution 387.27 15.07 5.84 5.84 Total: -1.00 -34.02 387.27 -8.06 -42.08 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -6.80 Total: 1.35 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -1.19 Total: -7.31 kcal Atomic # 7 Polarization: -30.38 SS G_CDS: 0.17 Total: -30.21 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -1.05 Total: -27.52 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.02 -8.06 -42.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492611176.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.024 kcal (2) G-P(sol) polarization free energy of solvation -34.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds