Wall clock time and date at job start Tue Mar 31 2020 19:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47177 * 2 1 4 4 C 1.50698 * 109.47210 * 239.99720 * 2 1 3 5 5 H 1.08001 * 120.00351 * 240.00148 * 4 2 1 6 6 C 1.37887 * 119.99947 * 59.99880 * 4 2 1 7 7 N 1.31517 * 119.99757 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99830 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47415 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46779 * 120.00564 * 8 6 4 11 11 H 1.48504 * 109.46806 * 240.00023 * 8 6 4 12 12 C 1.52998 * 109.47073 * 119.99870 * 2 1 3 13 13 O 1.45195 * 109.47381 * 300.00059 * 12 2 1 14 14 C 1.34225 * 117.00420 * 179.97438 * 13 12 2 15 15 O 1.20827 * 119.99894 * 359.97438 * 14 13 12 16 16 C 1.50702 * 120.00387 * 179.97438 * 14 13 12 17 17 C 1.52995 * 109.47279 * 180.02562 * 16 14 13 18 18 N 1.46502 * 109.47041 * 180.02562 * 17 16 14 19 19 C 1.34776 * 119.99814 * 180.02562 * 18 17 16 20 20 O 1.21773 * 120.00237 * 359.97438 * 19 18 17 21 21 C 1.41557 * 119.99762 * 180.27633 * 19 18 17 22 22 C 1.35626 * 119.99616 * 186.06298 * 21 19 18 23 23 C 1.41600 * 120.00628 * 8.85373 * 22 21 19 24 24 C 1.37955 * 126.10479 * 219.80683 * 23 22 21 25 25 C 1.40316 * 106.52697 * 179.84863 * 24 23 22 26 26 C 1.35159 * 107.20837 * 0.40349 * 25 24 23 27 27 O 1.34026 * 109.03199 * 359.74473 * 26 25 24 28 28 H 1.09002 * 109.47209 * 300.00173 * 1 2 3 29 29 H 1.09008 * 109.47201 * 59.99851 * 1 2 3 30 30 H 1.08998 * 109.47222 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46900 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47078 * 299.99730 * 3 2 1 33 33 H 1.08990 * 109.47462 * 60.00151 * 3 2 1 34 34 H 0.97000 * 119.99647 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.47137 * 179.97438 * 12 2 1 36 36 H 1.09006 * 109.46974 * 59.99805 * 12 2 1 37 37 H 1.08994 * 109.47217 * 59.99638 * 16 14 13 38 38 H 1.09005 * 109.46752 * 300.00406 * 16 14 13 39 39 H 1.08999 * 109.47494 * 60.00061 * 17 16 14 40 40 H 1.09002 * 109.47125 * 299.99402 * 17 16 14 41 41 H 0.96997 * 120.00012 * 359.97438 * 18 17 16 42 42 H 1.08002 * 120.00189 * 6.05624 * 21 19 18 43 43 H 1.08012 * 119.99485 * 188.85202 * 22 21 19 44 44 H 1.07994 * 126.73651 * 359.95911 * 24 23 22 45 45 H 1.08004 * 126.39835 * 180.15015 * 25 24 23 46 46 H 1.07997 * 125.48576 * 179.72054 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 3.1454 -2.2878 -3.6037 10 1 1.1660 -1.5868 -4.8160 11 1 3.1466 -0.1875 -4.8165 12 6 2.0400 -0.7212 1.2492 13 8 1.5560 -0.0368 2.4348 14 6 1.9162 -0.5471 3.6228 15 8 2.6125 -1.5334 3.6706 16 6 1.4522 0.1101 4.8972 17 6 1.9991 -0.6636 6.0984 18 7 1.5475 -0.0251 7.3372 19 6 1.9099 -0.5370 8.5301 20 8 2.6124 -1.5305 8.5783 21 6 1.4687 0.0766 9.7271 22 6 1.9312 -0.3620 10.9243 23 6 2.9902 -1.3007 10.9735 24 6 3.0927 -2.3657 11.8444 25 6 4.2929 -3.0222 11.5326 26 6 4.8671 -2.3437 10.5144 27 8 4.0821 -1.3099 10.1806 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 0.7094 1.1617 -3.4845 35 1 3.1299 -0.7216 1.2490 36 1 1.6766 -1.7489 1.2493 37 1 0.3627 0.1103 4.9301 38 1 1.8168 1.1368 4.9301 39 1 3.0886 -0.6633 6.0654 40 1 1.6348 -1.6904 6.0657 41 1 0.9882 0.7665 7.2989 42 1 0.7639 0.8940 9.6870 43 1 1.4917 0.0049 11.8402 44 1 2.3867 -2.6412 12.6138 45 1 4.6867 -3.9028 12.0184 46 1 5.8072 -2.5939 10.0456 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492611176.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:32 Heat of formation + Delta-G solvation = -109.998077 kcal Electronic energy + Delta-G solvation = -27774.861444 eV Core-core repulsion = 23631.345085 eV Total energy + Delta-G solvation = -4143.516360 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.29796 -41.55516 -40.75873 -38.44538 -36.72065 -36.35219 -34.96990 -33.72773 -33.31827 -32.35215 -29.68971 -27.75314 -27.56183 -27.21288 -25.93518 -24.03156 -22.55334 -22.09778 -21.89274 -20.73002 -20.44493 -18.99686 -18.70193 -17.81882 -17.72827 -17.55699 -17.15649 -16.81654 -16.70278 -16.41552 -16.29707 -15.31257 -15.24288 -14.98130 -14.81947 -14.53004 -14.35465 -14.03839 -13.70244 -13.60635 -13.40306 -13.32206 -13.22063 -13.13560 -12.93124 -12.85200 -12.61320 -12.57512 -12.32999 -12.15160 -11.72563 -11.68002 -11.27979 -11.21927 -11.07731 -10.98705 -10.73007 -10.69174 -10.41042 -10.11047 -8.88992 -8.05716 -6.23276 -0.34682 1.19947 1.20438 1.40698 1.43737 1.52747 1.62660 1.78100 2.29592 2.40751 2.51887 2.56313 3.17612 3.50250 3.87930 3.93370 3.98583 4.07318 4.16691 4.23578 4.26400 4.27218 4.42664 4.54605 4.62193 4.74728 4.79745 4.86464 4.88328 4.91125 5.05561 5.08806 5.17499 5.20227 5.23970 5.36129 5.38419 5.39525 5.60315 5.64658 5.67513 5.68771 6.09087 6.18134 6.30404 6.37157 6.60198 6.74004 6.82912 7.31142 7.44530 8.93895 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.030109 B = 0.001722 C = 0.001659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.740819 B =16252.132901 C =16876.802209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.058 3.942 3 C -0.118 4.118 4 C -0.533 4.533 5 H 0.046 0.954 6 C 0.028 3.972 7 N -0.898 5.898 8 Si 0.951 3.049 9 H -0.275 1.275 10 H -0.279 1.279 11 H -0.279 1.279 12 C 0.096 3.904 13 O -0.349 6.349 14 C 0.454 3.546 15 O -0.552 6.552 16 C -0.109 4.109 17 C 0.142 3.858 18 N -0.711 5.711 19 C 0.525 3.475 20 O -0.572 6.572 21 C -0.209 4.209 22 C 0.007 3.993 23 C -0.019 4.019 24 C -0.191 4.191 25 C -0.235 4.235 26 C -0.040 4.040 27 O -0.162 6.162 28 H 0.037 0.963 29 H 0.063 0.937 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.063 0.937 33 H 0.037 0.963 34 H 0.262 0.738 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.422 0.578 42 H 0.185 0.815 43 H 0.200 0.800 44 H 0.172 0.828 45 H 0.165 0.835 46 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.491 2.828 29.876 30.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.058 3.942 3 C -0.176 4.176 4 C -0.571 4.571 5 H 0.065 0.935 6 C -0.172 4.172 7 N -0.536 5.536 8 Si 0.777 3.223 9 H -0.200 1.200 10 H -0.205 1.205 11 H -0.205 1.205 12 C 0.023 3.977 13 O -0.265 6.265 14 C 0.298 3.702 15 O -0.444 6.444 16 C -0.147 4.147 17 C 0.017 3.983 18 N -0.364 5.364 19 C 0.317 3.683 20 O -0.454 6.454 21 C -0.229 4.229 22 C -0.012 4.012 23 C -0.069 4.069 24 C -0.210 4.210 25 C -0.254 4.254 26 C -0.109 4.109 27 O -0.056 6.056 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.082 0.918 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.162 0.838 38 H 0.161 0.839 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.260 0.740 42 H 0.202 0.798 43 H 0.217 0.783 44 H 0.190 0.810 45 H 0.183 0.817 46 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -0.838 2.190 29.462 29.556 hybrid contribution 0.509 -0.855 -1.386 1.706 sum -0.329 1.335 28.077 28.110 Atomic orbital electron populations 1.21613 0.96860 0.98581 1.00509 1.18297 0.93829 0.93391 0.88673 1.21612 0.97676 0.97773 1.00510 1.21228 1.32230 1.12396 0.91284 0.93525 1.25494 0.95031 0.95609 1.01092 1.69938 1.36691 1.23172 1.23775 0.85617 0.78168 0.78647 0.79838 1.19958 1.20508 1.20502 1.23233 0.97452 0.95159 0.81859 1.86491 1.69247 1.55696 1.15058 1.24268 0.76800 0.82170 0.86948 1.90667 1.37498 1.27600 1.88597 1.21493 1.05777 1.01968 0.85414 1.20721 0.98992 0.96117 0.82491 1.45661 1.54019 1.32383 1.04386 1.17879 0.80179 0.84648 0.85638 1.90899 1.38804 1.27943 1.87743 1.22470 1.05792 1.03829 0.90783 1.21250 0.89619 0.90064 1.00288 1.20354 0.91506 1.01798 0.93272 1.22557 0.99463 0.96813 1.02174 1.22004 0.97662 1.04164 1.01527 1.24715 0.98368 0.88689 0.99175 1.84243 1.28192 1.43616 1.49551 0.94450 0.91850 0.96271 0.96280 0.91848 0.94449 0.92813 0.93462 0.93458 0.83806 0.83903 0.92967 0.92891 0.73963 0.79818 0.78339 0.81031 0.81694 0.76842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.53 8.11 71.98 0.58 -4.95 16 2 C 0.06 2.83 0.58 -52.93 -0.03 2.80 16 3 C -0.12 -5.54 8.11 71.98 0.58 -4.96 16 4 C -0.53 -28.67 8.01 25.60 0.21 -28.46 16 5 H 0.05 2.54 7.74 -2.91 -0.02 2.51 16 6 C 0.03 1.48 5.15 84.66 0.44 1.92 16 7 N -0.90 -48.41 9.35 21.45 0.20 -48.21 16 8 Si 0.95 42.73 29.54 68.60 2.03 44.76 16 9 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 11 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 12 C 0.10 4.25 4.26 71.98 0.31 4.56 16 13 O -0.35 -12.93 8.88 -51.37 -0.46 -13.38 16 14 C 0.45 14.59 7.96 71.24 0.57 15.16 16 15 O -0.55 -22.05 15.73 21.96 0.35 -21.70 16 16 C -0.11 -2.04 5.93 29.85 0.18 -1.87 16 17 C 0.14 3.19 4.96 86.38 0.43 3.62 16 18 N -0.71 -11.35 5.55 -472.19 -2.62 -13.97 16 19 C 0.52 11.01 7.36 85.06 0.63 11.64 16 20 O -0.57 -17.85 12.41 19.16 0.24 -17.61 16 21 C -0.21 -2.47 9.85 22.48 0.22 -2.25 16 22 C 0.01 0.09 9.95 22.49 0.22 0.31 16 23 C -0.02 -0.40 5.32 23.03 0.12 -0.28 16 24 C -0.19 -3.48 10.90 22.71 0.25 -3.24 16 25 C -0.23 -4.46 10.87 22.07 0.24 -4.22 16 26 C -0.04 -0.86 12.06 67.11 0.81 -0.05 16 27 O -0.16 -4.20 7.81 17.48 0.14 -4.06 16 28 H 0.04 1.55 7.68 -2.39 -0.02 1.53 16 29 H 0.06 3.25 6.07 -2.38 -0.01 3.23 16 30 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 33 H 0.04 1.55 7.68 -2.39 -0.02 1.53 16 34 H 0.26 13.47 8.31 -92.71 -0.77 12.70 16 35 H 0.05 2.14 8.13 -2.39 -0.02 2.12 16 36 H 0.05 2.14 8.13 -2.38 -0.02 2.12 16 37 H 0.14 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.14 1.85 8.14 -2.38 -0.02 1.83 16 39 H 0.05 1.46 8.10 -2.39 -0.02 1.44 16 40 H 0.05 1.46 8.10 -2.39 -0.02 1.45 16 41 H 0.42 2.96 8.43 -92.71 -0.78 2.18 16 42 H 0.18 0.38 8.06 -2.91 -0.02 0.35 16 43 H 0.20 0.47 8.06 -2.90 -0.02 0.44 16 44 H 0.17 2.06 8.06 -2.91 -0.02 2.03 16 45 H 0.17 2.27 8.06 -2.91 -0.02 2.25 16 46 H 0.22 3.33 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -77.29 387.27 5.83 -71.46 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 0.21 Total: 12.97 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: 5.75 Total: -10.26 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: -2.42 Total: -62.17 kcal Atomic # 8 Polarization: -57.02 SS G_CDS: 0.26 Total: -56.76 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -77.29 5.83 -71.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492611176.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.536 kcal (2) G-P(sol) polarization free energy of solvation -77.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds