Wall clock time and date at job start Tue Mar 31 2020 18:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53008 * 109.46733 * 2 1 4 4 C 1.52996 * 109.47193 * 119.99661 * 2 1 3 5 5 H 1.08998 * 109.47221 * 300.00448 * 4 2 1 6 6 C 1.53010 * 109.46666 * 60.00355 * 4 2 1 7 7 O 1.42897 * 109.46952 * 54.99947 * 6 4 2 8 8 O 1.42893 * 109.47231 * 180.02562 * 4 2 1 9 9 N 1.41602 * 114.00474 * 155.00494 * 8 4 2 10 10 C 1.34770 * 120.00561 * 179.97438 * 9 8 4 11 11 O 1.21722 * 119.99697 * 0.02562 * 10 9 8 12 12 C 1.46250 * 120.00046 * 179.97438 * 10 9 8 13 13 C 1.35031 * 119.99722 * 180.02562 * 12 10 9 14 14 C 1.46959 * 119.99896 * 180.27394 * 13 12 10 15 15 C 1.40027 * 120.10017 * 359.45143 * 14 13 12 16 16 C 1.37601 * 119.89863 * 179.78912 * 15 14 13 17 17 C 1.39178 * 120.09610 * 0.48118 * 16 15 14 18 18 O 1.35575 * 119.89259 * 179.76441 * 17 16 15 19 19 C 1.34788 * 116.99533 * 174.42515 * 18 17 16 20 20 H 1.08001 * 120.00124 * 5.05799 * 19 18 17 21 21 C 1.38720 * 119.99795 * 185.06035 * 19 18 17 22 22 N 1.31507 * 119.99773 * 359.97438 * 21 19 18 23 23 Si 1.86791 * 119.99984 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47193 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47306 * 119.99699 * 23 21 19 26 26 H 1.48503 * 109.47196 * 239.99770 * 23 21 19 27 27 C 1.39170 * 120.20621 * 359.74800 * 17 16 15 28 28 C 1.37600 * 120.10262 * 0.02562 * 27 17 16 29 29 H 1.09000 * 109.46921 * 299.99804 * 1 2 3 30 30 H 1.08996 * 109.47010 * 59.99869 * 1 2 3 31 31 H 1.08996 * 109.46555 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46921 * 240.00196 * 2 1 3 33 33 H 1.09000 * 109.46767 * 299.99872 * 3 2 1 34 34 H 1.09006 * 109.46879 * 59.99821 * 3 2 1 35 35 H 1.08998 * 109.46748 * 179.97438 * 3 2 1 36 36 H 1.09002 * 109.46542 * 175.00035 * 6 4 2 37 37 H 1.09002 * 109.47007 * 294.99397 * 6 4 2 38 38 H 0.96701 * 113.99548 * 180.02562 * 7 6 4 39 39 H 0.96999 * 119.99110 * 359.97438 * 9 8 4 40 40 H 1.07990 * 120.00180 * 359.97438 * 12 10 9 41 41 H 1.08000 * 120.00105 * 359.97438 * 13 12 10 42 42 H 1.08005 * 120.04944 * 359.97438 * 15 14 13 43 43 H 1.07995 * 119.95289 * 180.22906 * 16 15 14 44 44 H 0.97004 * 119.99419 * 180.02562 * 22 21 19 45 45 H 1.07998 * 119.95118 * 179.97438 * 27 17 16 46 46 H 1.07997 * 120.05056 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6767 -0.2073 2.1392 6 6 1.5301 -2.1638 1.2492 7 8 1.9082 -2.8025 0.0281 8 8 3.4690 -0.7206 1.2496 9 7 4.0448 -0.8334 2.5383 10 6 5.3851 -0.8457 2.6789 11 8 6.1007 -0.7595 1.6980 12 6 5.9797 -0.9616 4.0100 13 6 7.3226 -0.9735 4.1509 14 6 7.9201 -1.0960 5.4879 15 6 7.0989 -1.1890 6.6182 16 6 7.6628 -1.3080 7.8678 17 6 9.0472 -1.3258 8.0099 18 8 9.5983 -1.4384 9.2435 19 6 10.9387 -1.5660 9.3053 20 1 11.5303 -1.4932 8.4047 21 6 11.5584 -1.7908 10.5259 22 7 10.8381 -1.8789 11.6226 23 14 13.4159 -1.9684 10.6116 24 1 13.9897 -1.8309 9.2489 25 1 13.9741 -0.9117 11.4932 26 1 13.7606 -3.3043 11.1609 27 6 9.8674 -1.2288 6.8898 28 6 9.3124 -1.1142 5.6359 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 3.1300 1.4426 0.0005 36 1 1.9647 -2.7027 2.0910 37 1 0.4438 -2.1651 1.3388 38 1 1.6169 -3.7220 -0.0412 39 1 3.4745 -0.9018 3.3199 40 1 5.3448 -1.0369 4.8803 41 1 7.9576 -0.8978 3.2805 42 1 6.0246 -1.1705 6.5092 43 1 7.0302 -1.3835 8.7398 44 1 11.2715 -2.0358 12.4762 45 1 10.9411 -1.2426 7.0049 46 1 9.9496 -1.0394 4.7672 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493407505.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:43 Heat of formation + Delta-G solvation = -75.298906 kcal Electronic energy + Delta-G solvation = -27118.736511 eV Core-core repulsion = 22976.724820 eV Total energy + Delta-G solvation = -4142.011691 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.67766 -39.22471 -38.64894 -36.93329 -36.37875 -35.22245 -33.26201 -32.40635 -31.81483 -30.45704 -29.14715 -28.12842 -27.28086 -25.70485 -23.84844 -23.14882 -22.20277 -21.15893 -20.48397 -19.32434 -18.52238 -18.08590 -17.45750 -17.15278 -16.95962 -16.15201 -15.56498 -15.10572 -14.85564 -14.82258 -14.51258 -14.39917 -13.99880 -13.88916 -13.85289 -13.52669 -13.25919 -13.06934 -13.02959 -12.64382 -12.57098 -12.52129 -11.97724 -11.94526 -11.78176 -11.74665 -11.45996 -11.16549 -11.11253 -11.05701 -10.76316 -10.69043 -10.54829 -10.41389 -9.83845 -9.64818 -9.52145 -8.96321 -8.84411 -8.41079 -7.15405 -6.67923 -4.22513 1.02550 1.84761 2.11077 2.53726 3.02298 3.03680 3.09357 3.56266 3.77485 3.80310 4.16415 4.21118 4.37064 4.48094 4.64344 4.81615 4.87392 4.89752 4.92284 4.96206 5.00898 5.10879 5.22452 5.24746 5.36709 5.46615 5.50187 5.54572 5.55050 5.63371 5.71550 5.95868 5.98223 6.02385 6.07560 6.38181 6.42961 6.55762 6.75679 6.77691 6.89084 7.09870 7.19977 7.22443 7.24521 7.37546 7.60863 7.77643 8.38890 8.77057 9.43559 10.48662 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.032519 B = 0.001583 C = 0.001565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.820282 B =17680.247137 C =17887.655356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.083 4.083 3 C -0.150 4.150 4 C 0.067 3.933 5 H 0.086 0.914 6 C 0.051 3.949 7 O -0.558 6.558 8 O -0.125 6.125 9 N -0.605 5.605 10 C 0.569 3.431 11 O -0.539 6.539 12 C -0.278 4.278 13 C 0.047 3.953 14 C -0.201 4.201 15 C -0.042 4.042 16 C -0.200 4.200 17 C 0.167 3.833 18 O -0.162 6.162 19 C -0.393 4.393 20 H 0.098 0.902 21 C 0.042 3.958 22 N -0.851 5.851 23 Si 0.945 3.055 24 H -0.264 1.264 25 H -0.274 1.274 26 H -0.274 1.274 27 C -0.242 4.242 28 C -0.032 4.032 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.065 0.935 36 H 0.049 0.951 37 H 0.058 0.942 38 H 0.378 0.622 39 H 0.403 0.597 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.118 0.882 43 H 0.121 0.879 44 H 0.274 0.726 45 H 0.132 0.868 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.147 1.240 -16.293 25.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.103 4.103 3 C -0.207 4.207 4 C 0.008 3.992 5 H 0.104 0.896 6 C -0.028 4.028 7 O -0.363 6.363 8 O -0.129 6.129 9 N -0.307 5.307 10 C 0.361 3.639 11 O -0.416 6.416 12 C -0.299 4.299 13 C 0.028 3.972 14 C -0.202 4.202 15 C -0.060 4.060 16 C -0.219 4.219 17 C 0.111 3.889 18 O -0.062 6.062 19 C -0.468 4.468 20 H 0.116 0.884 21 C -0.165 4.165 22 N -0.484 5.484 23 Si 0.769 3.231 24 H -0.188 1.188 25 H -0.199 1.199 26 H -0.199 1.199 27 C -0.261 4.261 28 C -0.051 4.051 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.109 0.891 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.224 0.776 39 H 0.243 0.757 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.136 0.864 43 H 0.139 0.861 44 H 0.084 0.916 45 H 0.149 0.851 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -18.294 1.866 -16.768 24.886 hybrid contribution -0.029 -0.743 0.724 1.038 sum -18.323 1.123 -16.044 24.380 Atomic orbital electron populations 1.21860 0.93932 1.02082 1.02310 1.21039 0.95575 0.96273 0.97388 1.21846 1.02372 0.94861 1.01637 1.22793 0.81751 0.94281 1.00389 0.89587 1.22799 0.98442 0.93986 0.87529 1.86565 1.81523 1.29969 1.38205 1.90693 1.18521 1.95981 1.07692 1.47614 1.05724 1.78772 0.98568 1.18423 0.79188 0.75986 0.90283 1.90810 1.60155 1.50195 1.40443 1.22098 0.96154 1.17732 0.93915 1.22283 0.94112 0.84881 0.95973 1.18420 0.93305 1.16640 0.91794 1.20878 0.98363 0.95556 0.91228 1.20148 0.92217 1.11988 0.97546 1.19621 0.92388 0.91303 0.85602 1.83905 1.24159 1.75346 1.22836 1.21544 0.78640 1.50810 0.95838 0.88421 1.25404 1.01056 0.95910 0.94106 1.70023 1.36427 1.43152 0.98758 0.85574 0.79833 0.78510 0.79156 1.18826 1.19902 1.19896 1.21105 1.00734 1.12174 0.92137 1.20997 0.93423 0.94118 0.96551 0.92582 0.91766 0.92250 0.89068 0.92345 0.92866 0.91559 0.93288 0.92374 0.77563 0.75733 0.85587 0.85676 0.86392 0.86108 0.91620 0.85067 0.86700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.79 8.84 37.16 0.33 -0.46 16 2 C -0.08 -0.66 2.52 -90.61 -0.23 -0.89 16 3 C -0.15 -1.23 9.05 37.16 0.34 -0.89 16 4 C 0.07 0.56 2.22 -26.73 -0.06 0.51 16 5 H 0.09 0.54 7.94 -51.93 -0.41 0.13 16 6 C 0.05 0.36 6.42 37.16 0.24 0.60 16 7 O -0.56 -4.86 12.75 -40.03 -0.51 -5.37 16 8 O -0.13 -1.62 10.04 -34.77 -0.35 -1.97 16 9 N -0.60 -7.13 6.37 30.16 0.19 -6.94 16 10 C 0.57 8.56 7.88 -13.04 -0.10 8.45 16 11 O -0.54 -10.47 16.64 -12.96 -0.22 -10.69 16 12 C -0.28 -3.71 9.41 -37.50 -0.35 -4.06 16 13 C 0.05 0.71 9.45 -37.19 -0.35 0.35 16 14 C -0.20 -3.33 5.87 -105.03 -0.62 -3.94 16 15 C -0.04 -0.69 9.40 -39.14 -0.37 -1.06 16 16 C -0.20 -3.89 9.97 -39.47 -0.39 -4.28 16 17 C 0.17 3.78 6.66 -38.89 -0.26 3.52 16 18 O -0.16 -4.33 9.74 0.70 0.01 -4.32 16 19 C -0.39 -10.32 9.48 30.91 0.29 -10.03 16 20 H 0.10 2.36 5.18 -52.49 -0.27 2.09 16 21 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 22 N -0.85 -23.57 13.67 55.48 0.76 -22.81 16 23 Si 0.95 19.34 29.55 -169.99 -5.02 14.32 16 24 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 25 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 26 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 27 C -0.24 -4.93 9.14 -39.47 -0.36 -5.29 16 28 C -0.03 -0.57 9.78 -39.15 -0.38 -0.95 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.30 6.55 -51.93 -0.34 -0.04 16 32 H 0.09 0.91 7.56 -51.93 -0.39 0.51 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.70 7.68 -51.93 -0.40 0.30 16 36 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.06 0.27 6.71 -51.93 -0.35 -0.07 16 38 H 0.38 1.62 9.12 45.56 0.42 2.04 16 39 H 0.40 3.15 8.40 -40.82 -0.34 2.81 16 40 H 0.13 1.35 6.06 -52.49 -0.32 1.04 16 41 H 0.13 1.88 7.52 -52.49 -0.39 1.48 16 42 H 0.12 1.53 6.16 -52.48 -0.32 1.21 16 43 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 44 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 45 H 0.13 2.65 5.62 -52.49 -0.29 2.36 16 46 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 LS Contribution 391.31 15.07 5.90 5.90 Total: -1.00 -34.07 391.31 -7.14 -41.20 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -5.52 Total: 8.12 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: -2.38 Total: -17.45 kcal Atomic # 7 Polarization: -30.70 SS G_CDS: 0.95 Total: -29.75 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -1.07 Total: -22.35 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.02 Total: 14.32 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.07 -7.14 -41.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493407505.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.095 kcal (2) G-P(sol) polarization free energy of solvation -34.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds