Wall clock time and date at job start Tue Mar 31 2020 18:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53008 * 109.46733 * 2 1 4 4 C 1.52996 * 109.47193 * 119.99661 * 2 1 3 5 5 H 1.08998 * 109.47221 * 300.00448 * 4 2 1 6 6 C 1.53010 * 109.46666 * 60.00355 * 4 2 1 7 7 O 1.42897 * 109.46952 * 54.99947 * 6 4 2 8 8 O 1.42893 * 109.47231 * 180.02562 * 4 2 1 9 9 N 1.41602 * 114.00474 * 155.00494 * 8 4 2 10 10 C 1.34770 * 120.00561 * 179.97438 * 9 8 4 11 11 O 1.21722 * 119.99697 * 0.02562 * 10 9 8 12 12 C 1.46250 * 120.00046 * 179.97438 * 10 9 8 13 13 C 1.35031 * 119.99722 * 180.02562 * 12 10 9 14 14 C 1.46959 * 119.99896 * 180.27394 * 13 12 10 15 15 C 1.40027 * 120.10017 * 359.45143 * 14 13 12 16 16 C 1.37601 * 119.89863 * 179.78912 * 15 14 13 17 17 C 1.39178 * 120.09610 * 0.48118 * 16 15 14 18 18 O 1.35575 * 119.89259 * 179.76441 * 17 16 15 19 19 C 1.34788 * 116.99533 * 174.42515 * 18 17 16 20 20 H 1.08001 * 120.00124 * 5.05799 * 19 18 17 21 21 C 1.38720 * 119.99795 * 185.06035 * 19 18 17 22 22 N 1.31507 * 119.99773 * 359.97438 * 21 19 18 23 23 Si 1.86791 * 119.99984 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47193 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47306 * 119.99699 * 23 21 19 26 26 H 1.48503 * 109.47196 * 239.99770 * 23 21 19 27 27 C 1.39170 * 120.20621 * 359.74800 * 17 16 15 28 28 C 1.37600 * 120.10262 * 0.02562 * 27 17 16 29 29 H 1.09000 * 109.46921 * 299.99804 * 1 2 3 30 30 H 1.08996 * 109.47010 * 59.99869 * 1 2 3 31 31 H 1.08996 * 109.46555 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46921 * 240.00196 * 2 1 3 33 33 H 1.09000 * 109.46767 * 299.99872 * 3 2 1 34 34 H 1.09006 * 109.46879 * 59.99821 * 3 2 1 35 35 H 1.08998 * 109.46748 * 179.97438 * 3 2 1 36 36 H 1.09002 * 109.46542 * 175.00035 * 6 4 2 37 37 H 1.09002 * 109.47007 * 294.99397 * 6 4 2 38 38 H 0.96701 * 113.99548 * 180.02562 * 7 6 4 39 39 H 0.96999 * 119.99110 * 359.97438 * 9 8 4 40 40 H 1.07990 * 120.00180 * 359.97438 * 12 10 9 41 41 H 1.08000 * 120.00105 * 359.97438 * 13 12 10 42 42 H 1.08005 * 120.04944 * 359.97438 * 15 14 13 43 43 H 1.07995 * 119.95289 * 180.22906 * 16 15 14 44 44 H 0.97004 * 119.99419 * 180.02562 * 22 21 19 45 45 H 1.07998 * 119.95118 * 179.97438 * 27 17 16 46 46 H 1.07997 * 120.05056 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6767 -0.2073 2.1392 6 6 1.5301 -2.1638 1.2492 7 8 1.9082 -2.8025 0.0281 8 8 3.4690 -0.7206 1.2496 9 7 4.0448 -0.8334 2.5383 10 6 5.3851 -0.8457 2.6789 11 8 6.1007 -0.7595 1.6980 12 6 5.9797 -0.9616 4.0100 13 6 7.3226 -0.9735 4.1509 14 6 7.9201 -1.0960 5.4879 15 6 7.0989 -1.1890 6.6182 16 6 7.6628 -1.3080 7.8678 17 6 9.0472 -1.3258 8.0099 18 8 9.5983 -1.4384 9.2435 19 6 10.9387 -1.5660 9.3053 20 1 11.5303 -1.4932 8.4047 21 6 11.5584 -1.7908 10.5259 22 7 10.8381 -1.8789 11.6226 23 14 13.4159 -1.9684 10.6116 24 1 13.9897 -1.8309 9.2489 25 1 13.9741 -0.9117 11.4932 26 1 13.7606 -3.3043 11.1609 27 6 9.8674 -1.2288 6.8898 28 6 9.3124 -1.1142 5.6359 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 3.1300 1.4426 0.0005 36 1 1.9647 -2.7027 2.0910 37 1 0.4438 -2.1651 1.3388 38 1 1.6169 -3.7220 -0.0412 39 1 3.4745 -0.9018 3.3199 40 1 5.3448 -1.0369 4.8803 41 1 7.9576 -0.8978 3.2805 42 1 6.0246 -1.1705 6.5092 43 1 7.0302 -1.3835 8.7398 44 1 11.2715 -2.0358 12.4762 45 1 10.9411 -1.2426 7.0049 46 1 9.9496 -1.0394 4.7672 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493407505.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:42 Heat of formation + Delta-G solvation = -99.083697 kcal Electronic energy + Delta-G solvation = -27119.767897 eV Core-core repulsion = 22976.724820 eV Total energy + Delta-G solvation = -4143.043077 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.90484 -40.59255 -39.58725 -38.47019 -37.15782 -35.92506 -34.75718 -34.05511 -32.91644 -31.94982 -29.89684 -29.42232 -27.84233 -27.47994 -24.92246 -24.05999 -23.68073 -22.38268 -21.39566 -20.52198 -19.79562 -19.23710 -18.74810 -18.29984 -18.04779 -16.91353 -16.51460 -16.47225 -16.13398 -15.97782 -15.83002 -15.64831 -15.56497 -15.08782 -14.89072 -14.60689 -14.47531 -14.10358 -14.03236 -13.60859 -13.59618 -13.31770 -13.21542 -13.16367 -13.00434 -12.73453 -12.62807 -12.55494 -12.20737 -12.10321 -12.07126 -11.67352 -11.42482 -11.20439 -11.13327 -11.10173 -10.92742 -10.59102 -9.90101 -9.87577 -8.68702 -8.52083 -6.17887 -0.27206 0.60432 0.91310 1.12278 1.36653 1.45368 1.54226 2.15530 2.32903 2.86617 3.18584 3.24773 3.43041 3.46839 3.60885 3.72783 3.81115 3.95096 4.09067 4.09898 4.25587 4.31476 4.33072 4.39681 4.46576 4.48990 4.53281 4.65919 4.76361 4.77127 4.95326 4.95827 4.98975 5.02125 5.20112 5.21012 5.24016 5.33296 5.36304 5.39442 5.57619 5.65142 5.78941 5.84829 5.98147 6.11422 6.38898 6.86405 6.92719 7.30862 7.69659 8.70080 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.032519 B = 0.001583 C = 0.001565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.820282 B =17680.247137 C =17887.655356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.081 4.081 3 C -0.148 4.148 4 C 0.056 3.944 5 H 0.114 0.886 6 C 0.050 3.950 7 O -0.586 6.586 8 O -0.157 6.157 9 N -0.585 5.585 10 C 0.562 3.438 11 O -0.588 6.588 12 C -0.235 4.235 13 C 0.026 3.974 14 C -0.171 4.171 15 C -0.034 4.034 16 C -0.206 4.206 17 C 0.131 3.869 18 O -0.219 6.219 19 C -0.416 4.416 20 H 0.106 0.894 21 C -0.018 4.018 22 N -0.913 5.913 23 Si 1.018 2.982 24 H -0.251 1.251 25 H -0.268 1.268 26 H -0.268 1.268 27 C -0.250 4.250 28 C -0.039 4.039 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.035 0.965 36 H 0.052 0.948 37 H 0.088 0.912 38 H 0.394 0.606 39 H 0.424 0.576 40 H 0.164 0.836 41 H 0.124 0.876 42 H 0.165 0.835 43 H 0.125 0.875 44 H 0.275 0.725 45 H 0.124 0.876 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.049 1.418 -18.461 28.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.101 4.101 3 C -0.205 4.205 4 C -0.002 4.002 5 H 0.131 0.869 6 C -0.028 4.028 7 O -0.394 6.394 8 O -0.162 6.162 9 N -0.287 5.287 10 C 0.354 3.646 11 O -0.469 6.469 12 C -0.256 4.256 13 C 0.006 3.994 14 C -0.172 4.172 15 C -0.052 4.052 16 C -0.226 4.226 17 C 0.078 3.922 18 O -0.124 6.124 19 C -0.492 4.492 20 H 0.123 0.877 21 C -0.217 4.217 22 N -0.550 5.550 23 Si 0.837 3.163 24 H -0.175 1.175 25 H -0.193 1.193 26 H -0.193 1.193 27 C -0.269 4.269 28 C -0.057 4.057 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.054 0.946 36 H 0.070 0.930 37 H 0.105 0.895 38 H 0.243 0.757 39 H 0.268 0.732 40 H 0.182 0.818 41 H 0.142 0.858 42 H 0.182 0.818 43 H 0.143 0.857 44 H 0.084 0.916 45 H 0.141 0.859 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -21.287 2.039 -18.985 28.596 hybrid contribution 0.365 -0.734 0.832 1.167 sum -20.922 1.306 -18.154 27.731 Atomic orbital electron populations 1.21825 0.91601 1.02848 1.03280 1.21031 0.97333 0.95509 0.96237 1.21823 1.00370 0.95553 1.02750 1.23177 0.79568 0.95825 1.01592 0.86854 1.22892 1.00120 0.92837 0.86984 1.86527 1.82152 1.31540 1.39161 1.90706 1.21363 1.96150 1.07964 1.47348 1.05303 1.76520 0.99497 1.18695 0.80000 0.75681 0.90198 1.90806 1.61625 1.52394 1.42083 1.22402 0.95951 1.12928 0.94339 1.22158 0.94964 0.87435 0.94855 1.18707 0.93008 1.12729 0.92740 1.21318 1.00662 0.93670 0.89534 1.20439 0.91119 1.11746 0.99255 1.20219 0.94037 0.92492 0.85406 1.83887 1.24307 1.79356 1.24863 1.21938 0.79235 1.51530 0.96495 0.87716 1.26583 1.06087 0.95498 0.93483 1.70151 1.38533 1.46853 0.99424 0.84533 0.73564 0.78562 0.79625 1.17475 1.19320 1.19347 1.21193 1.00443 1.12447 0.92840 1.21317 0.94595 0.93548 0.96230 0.91018 0.91433 0.91572 0.91733 0.91532 0.91510 0.94562 0.92999 0.89459 0.75659 0.73196 0.81836 0.85809 0.81753 0.85740 0.91606 0.85873 0.83896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 8.84 71.99 0.64 -0.44 16 2 C -0.08 -1.13 2.52 -10.79 -0.03 -1.16 16 3 C -0.15 -2.18 9.05 71.98 0.65 -1.53 16 4 C 0.06 0.78 2.22 30.60 0.07 0.85 16 5 H 0.11 0.91 7.94 -2.39 -0.02 0.89 16 6 C 0.05 0.54 6.42 71.99 0.46 1.00 16 7 O -0.59 -9.07 12.75 -144.39 -1.84 -10.91 16 8 O -0.16 -3.72 10.04 -16.51 -0.17 -3.89 16 9 N -0.58 -11.67 6.37 -176.70 -1.13 -12.79 16 10 C 0.56 15.04 7.88 86.33 0.68 15.72 16 11 O -0.59 -21.91 16.64 12.92 0.21 -21.69 16 12 C -0.24 -5.13 9.41 23.62 0.22 -4.91 16 13 C 0.03 0.67 9.45 23.82 0.23 0.90 16 14 C -0.17 -5.10 5.87 -20.13 -0.12 -5.22 16 15 C -0.03 -1.00 9.40 22.55 0.21 -0.79 16 16 C -0.21 -7.90 9.97 22.34 0.22 -7.68 16 17 C 0.13 6.09 6.66 22.72 0.15 6.24 16 18 O -0.22 -12.51 9.74 -20.39 -0.20 -12.71 16 19 C -0.42 -23.21 9.48 67.94 0.64 -22.56 16 20 H 0.11 5.36 5.18 -2.91 -0.02 5.34 16 21 C -0.02 -0.97 5.49 84.86 0.47 -0.50 16 22 N -0.91 -53.83 13.67 21.62 0.30 -53.54 16 23 Si 1.02 41.27 29.55 68.60 2.03 43.30 16 24 H -0.25 -9.45 7.11 99.48 0.71 -8.74 16 25 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 26 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 27 C -0.25 -10.32 9.14 22.34 0.20 -10.11 16 28 C -0.04 -1.29 9.78 22.55 0.22 -1.07 16 29 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.07 0.44 6.55 -2.39 -0.02 0.42 16 32 H 0.06 1.25 7.56 -2.39 -0.02 1.23 16 33 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.04 0.75 7.68 -2.39 -0.02 0.73 16 36 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.09 0.45 6.71 -2.39 -0.02 0.43 16 38 H 0.39 2.62 9.12 -74.06 -0.68 1.94 16 39 H 0.42 4.51 8.40 -92.71 -0.78 3.73 16 40 H 0.16 2.32 6.06 -2.92 -0.02 2.31 16 41 H 0.12 3.37 7.52 -2.91 -0.02 3.35 16 42 H 0.17 3.23 6.16 -2.91 -0.02 3.22 16 43 H 0.12 4.59 8.06 -2.91 -0.02 4.56 16 44 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 45 H 0.12 5.18 5.62 -2.91 -0.02 5.16 16 46 H 0.14 3.90 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -81.34 391.31 3.70 -77.64 By element: Atomic # 1 Polarization: 26.28 SS G_CDS: -0.42 Total: 25.85 kcal Atomic # 6 Polarization: -36.18 SS G_CDS: 4.92 Total: -31.26 kcal Atomic # 7 Polarization: -65.50 SS G_CDS: -0.83 Total: -66.33 kcal Atomic # 8 Polarization: -47.21 SS G_CDS: -1.99 Total: -49.20 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Total: -81.34 3.70 -77.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493407505.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.447 kcal (2) G-P(sol) polarization free energy of solvation -81.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds