Wall clock time and date at job start Tue Mar 31 2020 19:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47178 * 2 1 4 4 H 1.09002 * 109.47157 * 304.51347 * 3 2 1 5 5 C 1.50699 * 109.47206 * 184.51535 * 3 2 1 6 6 H 1.08004 * 120.00347 * 245.62441 * 5 3 2 7 7 C 1.37881 * 120.00173 * 65.62249 * 5 3 2 8 8 N 1.31510 * 120.00258 * 195.78829 * 7 5 3 9 9 Si 1.86800 * 119.99770 * 15.78895 * 7 5 3 10 10 H 1.48498 * 109.47409 * 179.97438 * 9 7 5 11 11 H 1.48502 * 109.47371 * 299.99740 * 9 7 5 12 12 H 1.48506 * 109.47086 * 59.99920 * 9 7 5 13 13 O 1.45199 * 109.47308 * 64.51367 * 3 2 1 14 14 C 1.34223 * 117.00121 * 269.99829 * 13 3 2 15 15 O 1.20823 * 120.00308 * 0.02562 * 14 13 3 16 16 C 1.50701 * 120.00223 * 179.97438 * 14 13 3 17 17 N 1.46500 * 109.47291 * 180.02562 * 16 14 13 18 18 C 1.46507 * 119.99523 * 90.00328 * 17 16 14 19 19 C 1.34776 * 120.00250 * 269.99825 * 17 16 14 20 20 O 1.21508 * 119.99587 * 0.02562 * 19 17 16 21 21 O 1.34635 * 119.99944 * 179.97438 * 19 17 16 22 22 C 1.45193 * 116.99949 * 180.02562 * 21 19 17 23 23 C 1.50697 * 109.47483 * 180.02562 * 22 21 19 24 24 C 1.38234 * 120.00666 * 269.73571 * 23 22 21 25 25 C 1.38230 * 120.00096 * 179.76258 * 24 23 22 26 26 C 1.38234 * 120.00300 * 0.50458 * 25 24 23 27 27 C 1.38240 * 119.99834 * 359.74338 * 26 25 24 28 28 C 1.38237 * 119.99861 * 0.02562 * 27 26 25 29 29 H 1.09005 * 109.47387 * 300.00153 * 1 2 3 30 30 H 1.09005 * 109.47269 * 60.00199 * 1 2 3 31 31 H 1.09001 * 109.47481 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46897 * 239.99885 * 2 1 3 33 33 H 1.08996 * 109.46881 * 120.00217 * 2 1 3 34 34 H 0.96994 * 119.99763 * 354.87757 * 8 7 5 35 35 H 1.08999 * 109.47191 * 300.00834 * 16 14 13 36 36 H 1.09008 * 109.46875 * 60.00213 * 16 14 13 37 37 H 1.09004 * 109.46828 * 90.00016 * 18 17 16 38 38 H 1.09001 * 109.46549 * 209.99601 * 18 17 16 39 39 H 1.08991 * 109.47300 * 330.00045 * 18 17 16 40 40 H 1.08995 * 109.47890 * 300.00582 * 22 21 19 41 41 H 1.09007 * 109.46701 * 60.00749 * 22 21 19 42 42 H 1.08008 * 119.99403 * 359.97438 * 24 23 22 43 43 H 1.08000 * 119.99768 * 180.22540 * 25 24 23 44 44 H 1.08001 * 120.00063 * 179.72888 * 26 25 24 45 45 H 1.07993 * 120.00067 * 179.97438 * 27 26 25 46 46 H 1.07994 * 119.99869 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6121 1.9791 -0.8468 5 6 3.5428 1.4439 -0.1119 6 1 4.1450 1.8079 0.7075 7 6 4.1492 0.9804 -1.2602 8 7 5.4313 0.6878 -1.2547 9 14 3.1494 0.7682 -2.8238 10 1 4.0280 0.2610 -3.9082 11 1 2.0513 -0.2017 -2.5815 12 1 2.5741 2.0772 -3.2250 13 8 1.6460 2.0951 1.2357 14 6 0.4628 2.7289 1.2397 15 8 -0.2212 2.7377 0.2438 16 6 -0.0129 3.4287 2.4867 17 7 -1.3215 4.0378 2.2359 18 6 -2.5457 3.2749 2.4921 19 6 -1.3991 5.2999 1.7696 20 8 -0.3837 5.9324 1.5568 21 8 -2.6017 5.8594 1.5386 22 6 -2.6094 7.2217 1.0362 23 6 -4.0325 7.6767 0.8398 24 6 -4.6610 7.4764 -0.3750 25 6 -5.9680 7.8895 -0.5534 26 6 -6.6433 8.5123 0.4796 27 6 -6.0132 8.7172 1.6928 28 6 -4.7076 8.2999 1.8728 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 5.9664 0.8676 -0.4659 35 1 -0.0983 2.7064 3.2986 36 1 0.7019 4.2037 2.7637 37 1 -2.8688 3.4408 3.5198 38 1 -3.3281 3.6030 1.8077 39 1 -2.3510 2.2134 2.3394 40 1 -2.1147 7.8764 1.7536 41 1 -2.0805 7.2607 0.0839 42 1 -4.1318 6.9941 -1.1836 43 1 -6.4602 7.7297 -1.5014 44 1 -7.6630 8.8389 0.3387 45 1 -6.5405 9.2041 2.4997 46 1 -4.2152 8.4604 2.8205 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495738145.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:56 Heat of formation + Delta-G solvation = -134.988956 kcal Electronic energy + Delta-G solvation = -28798.490717 eV Core-core repulsion = 24653.890671 eV Total energy + Delta-G solvation = -4144.600046 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.79743 -39.83249 -39.36741 -37.11335 -36.00874 -35.32832 -33.57352 -32.46459 -31.91517 -31.27770 -29.31456 -27.48675 -27.21864 -25.96865 -22.95820 -22.68465 -22.09630 -21.54069 -20.51487 -19.58202 -18.25030 -17.88259 -17.53300 -17.24987 -16.78016 -16.54571 -15.79590 -15.70213 -15.48209 -15.17796 -14.73395 -14.07587 -13.87806 -13.78996 -13.63005 -13.28688 -13.22654 -12.92444 -12.83371 -12.61467 -12.57135 -12.49622 -12.44430 -11.92907 -11.56160 -11.47013 -11.45668 -11.32210 -10.93908 -10.77084 -10.61891 -10.53087 -10.12619 -9.96973 -9.66251 -9.55151 -9.28788 -9.25425 -8.93905 -8.84499 -8.37462 -6.62984 -4.23904 0.77430 1.03751 1.99119 2.71055 2.81700 3.30368 3.32438 3.40420 3.52602 3.60418 3.86999 4.36664 4.40649 4.45312 4.63942 4.75682 4.90767 4.95862 5.00790 5.09361 5.10954 5.17645 5.26485 5.28435 5.39886 5.45725 5.57427 5.62867 5.66883 5.86751 5.92798 6.02346 6.04384 6.09995 6.13074 6.17331 6.20428 6.44187 6.59270 6.59396 6.76566 6.80614 7.12426 7.17143 7.38814 7.82057 8.15925 8.25486 8.47550 8.84483 9.44003 10.79885 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.018384 B = 0.002434 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.678362 B =11499.944293 C =11879.045690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.149 4.149 3 C 0.202 3.798 4 H 0.037 0.963 5 C -0.605 4.605 6 H 0.069 0.931 7 C 0.039 3.961 8 N -0.894 5.894 9 Si 1.037 2.963 10 H -0.279 1.279 11 H -0.269 1.269 12 H -0.279 1.279 13 O -0.343 6.343 14 C 0.433 3.567 15 O -0.510 6.510 16 C 0.137 3.863 17 N -0.582 5.582 18 C 0.088 3.912 19 C 0.656 3.344 20 O -0.564 6.564 21 O -0.360 6.360 22 C 0.127 3.873 23 C -0.096 4.096 24 C -0.092 4.092 25 C -0.124 4.124 26 C -0.110 4.110 27 C -0.125 4.125 28 C -0.094 4.094 29 H 0.039 0.961 30 H 0.053 0.947 31 H 0.040 0.960 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.271 0.729 35 H 0.124 0.876 36 H 0.126 0.874 37 H 0.060 0.940 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.127 0.873 43 H 0.125 0.875 44 H 0.123 0.877 45 H 0.125 0.875 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.355 11.829 8.248 28.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.186 4.186 3 C 0.148 3.852 4 H 0.055 0.945 5 C -0.643 4.643 6 H 0.087 0.913 7 C -0.167 4.167 8 N -0.528 5.528 9 Si 0.864 3.136 10 H -0.205 1.205 11 H -0.195 1.195 12 H -0.205 1.205 13 O -0.258 6.258 14 C 0.274 3.726 15 O -0.399 6.399 16 C 0.013 3.987 17 N -0.322 5.322 18 C -0.055 4.055 19 C 0.410 3.590 20 O -0.452 6.452 21 O -0.274 6.274 22 C 0.053 3.947 23 C -0.096 4.096 24 C -0.110 4.110 25 C -0.142 4.142 26 C -0.128 4.128 27 C -0.143 4.143 28 C -0.112 4.112 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.142 0.858 36 H 0.144 0.856 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.145 0.855 43 H 0.143 0.857 44 H 0.141 0.859 45 H 0.143 0.857 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -24.120 11.523 6.266 27.456 hybrid contribution -0.065 0.520 1.429 1.522 sum -24.185 12.043 7.694 28.092 Atomic orbital electron populations 1.21890 0.97493 0.99729 1.01302 1.22445 0.93730 0.99406 1.03048 1.20920 0.96220 0.87930 0.80109 0.94492 1.21950 0.88639 1.49036 1.04665 0.91291 1.25655 0.97401 0.92688 1.00983 1.70859 1.07164 1.40833 1.33898 0.84179 0.75564 0.77771 0.76085 1.20454 1.19533 1.20474 1.86521 1.33902 1.62217 1.43125 1.23868 0.81131 0.77330 0.90300 1.90604 1.56106 1.58149 1.35040 1.20916 0.84256 0.99172 0.94313 1.46105 1.07452 1.10920 1.67719 1.21806 0.85652 0.96626 1.01398 1.17896 0.82042 0.82335 0.76693 1.91035 1.35232 1.62720 1.56199 1.86275 1.30865 1.31151 1.79115 1.21727 0.93644 0.78830 1.00524 1.19546 0.94928 1.00446 0.94730 1.21178 0.94906 0.97928 0.96997 1.21186 0.94628 0.98984 0.99375 1.21252 0.99924 0.98279 0.93392 1.21161 0.94901 1.00582 0.97693 1.21113 0.94612 0.97274 0.98176 0.94176 0.92741 0.94057 0.90248 0.91935 0.91829 0.85800 0.85595 0.92125 0.90209 0.90679 0.90115 0.90009 0.85548 0.85663 0.85873 0.85742 0.85716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 8.56 37.16 0.32 -2.52 16 2 C -0.15 -3.35 5.32 -26.74 -0.14 -3.50 16 3 C 0.20 5.14 1.84 -27.89 -0.05 5.09 16 4 H 0.04 1.00 5.84 -51.93 -0.30 0.70 16 5 C -0.61 -17.51 9.17 -34.44 -0.32 -17.82 16 6 H 0.07 2.14 8.06 -52.48 -0.42 1.71 16 7 C 0.04 1.13 5.33 -17.82 -0.10 1.03 16 8 N -0.89 -27.21 13.70 55.43 0.76 -26.45 16 9 Si 1.04 25.40 26.27 -169.99 -4.47 20.93 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.27 -6.04 5.61 56.52 0.32 -5.72 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 13 O -0.34 -7.88 9.80 -39.24 -0.38 -8.26 16 14 C 0.43 8.59 6.46 36.01 0.23 8.83 16 15 O -0.51 -11.24 13.57 -18.75 -0.25 -11.50 16 16 C 0.14 1.97 6.00 -5.19 -0.03 1.94 16 17 N -0.58 -8.10 2.36 -188.80 -0.45 -8.54 16 18 C 0.09 0.89 10.44 59.85 0.63 1.52 16 19 C 0.66 10.36 8.39 54.05 0.45 10.82 16 20 O -0.56 -10.69 15.71 -19.28 -0.30 -10.99 16 21 O -0.36 -4.83 9.03 -40.31 -0.36 -5.20 16 22 C 0.13 1.44 5.60 36.00 0.20 1.64 16 23 C -0.10 -0.94 5.52 -104.62 -0.58 -1.52 16 24 C -0.09 -0.85 9.70 -39.59 -0.38 -1.23 16 25 C -0.12 -0.96 10.05 -39.59 -0.40 -1.36 16 26 C -0.11 -0.78 10.05 -39.58 -0.40 -1.17 16 27 C -0.13 -0.90 10.05 -39.58 -0.40 -1.30 16 28 C -0.09 -0.78 9.70 -39.58 -0.38 -1.17 16 29 H 0.04 0.73 6.07 -51.93 -0.32 0.42 16 30 H 0.05 1.10 7.77 -51.93 -0.40 0.69 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 1.84 4.67 -51.93 -0.24 1.60 16 33 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.27 8.19 8.73 -40.82 -0.36 7.84 16 35 H 0.12 1.27 8.07 -51.93 -0.42 0.85 16 36 H 0.13 1.81 7.42 -51.92 -0.39 1.43 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.83 7.37 -51.93 -0.38 0.45 16 39 H 0.07 0.73 8.07 -51.93 -0.42 0.31 16 40 H 0.08 0.85 8.08 -51.93 -0.42 0.43 16 41 H 0.08 0.97 8.08 -51.92 -0.42 0.55 16 42 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 43 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 44 H 0.12 0.59 8.06 -52.49 -0.42 0.16 16 45 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 46 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 LS Contribution 385.39 15.07 5.81 5.81 Total: -1.00 -35.56 385.39 -7.75 -43.30 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -6.75 Total: 1.62 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -1.34 Total: -0.73 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: 0.31 Total: -34.99 kcal Atomic # 8 Polarization: -34.64 SS G_CDS: -1.31 Total: -35.94 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -4.47 Total: 20.93 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.56 -7.75 -43.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495738145.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.687 kcal (2) G-P(sol) polarization free energy of solvation -35.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds