Wall clock time and date at job start Tue Mar 31 2020 19:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47178 * 2 1 4 4 H 1.09002 * 109.47157 * 304.51347 * 3 2 1 5 5 C 1.50699 * 109.47206 * 184.51535 * 3 2 1 6 6 H 1.08004 * 120.00347 * 245.62441 * 5 3 2 7 7 C 1.37881 * 120.00173 * 65.62249 * 5 3 2 8 8 N 1.31510 * 120.00258 * 195.78829 * 7 5 3 9 9 Si 1.86800 * 119.99770 * 15.78895 * 7 5 3 10 10 H 1.48498 * 109.47409 * 179.97438 * 9 7 5 11 11 H 1.48502 * 109.47371 * 299.99740 * 9 7 5 12 12 H 1.48506 * 109.47086 * 59.99920 * 9 7 5 13 13 O 1.45199 * 109.47308 * 64.51367 * 3 2 1 14 14 C 1.34223 * 117.00121 * 269.99829 * 13 3 2 15 15 O 1.20823 * 120.00308 * 0.02562 * 14 13 3 16 16 C 1.50701 * 120.00223 * 179.97438 * 14 13 3 17 17 N 1.46500 * 109.47291 * 180.02562 * 16 14 13 18 18 C 1.46507 * 119.99523 * 90.00328 * 17 16 14 19 19 C 1.34776 * 120.00250 * 269.99825 * 17 16 14 20 20 O 1.21508 * 119.99587 * 0.02562 * 19 17 16 21 21 O 1.34635 * 119.99944 * 179.97438 * 19 17 16 22 22 C 1.45193 * 116.99949 * 180.02562 * 21 19 17 23 23 C 1.50697 * 109.47483 * 180.02562 * 22 21 19 24 24 C 1.38234 * 120.00666 * 269.73571 * 23 22 21 25 25 C 1.38230 * 120.00096 * 179.76258 * 24 23 22 26 26 C 1.38234 * 120.00300 * 0.50458 * 25 24 23 27 27 C 1.38240 * 119.99834 * 359.74338 * 26 25 24 28 28 C 1.38237 * 119.99861 * 0.02562 * 27 26 25 29 29 H 1.09005 * 109.47387 * 300.00153 * 1 2 3 30 30 H 1.09005 * 109.47269 * 60.00199 * 1 2 3 31 31 H 1.09001 * 109.47481 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46897 * 239.99885 * 2 1 3 33 33 H 1.08996 * 109.46881 * 120.00217 * 2 1 3 34 34 H 0.96994 * 119.99763 * 354.87757 * 8 7 5 35 35 H 1.08999 * 109.47191 * 300.00834 * 16 14 13 36 36 H 1.09008 * 109.46875 * 60.00213 * 16 14 13 37 37 H 1.09004 * 109.46828 * 90.00016 * 18 17 16 38 38 H 1.09001 * 109.46549 * 209.99601 * 18 17 16 39 39 H 1.08991 * 109.47300 * 330.00045 * 18 17 16 40 40 H 1.08995 * 109.47890 * 300.00582 * 22 21 19 41 41 H 1.09007 * 109.46701 * 60.00749 * 22 21 19 42 42 H 1.08008 * 119.99403 * 359.97438 * 24 23 22 43 43 H 1.08000 * 119.99768 * 180.22540 * 25 24 23 44 44 H 1.08001 * 120.00063 * 179.72888 * 26 25 24 45 45 H 1.07993 * 120.00067 * 179.97438 * 27 26 25 46 46 H 1.07994 * 119.99869 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6121 1.9791 -0.8468 5 6 3.5428 1.4439 -0.1119 6 1 4.1450 1.8079 0.7075 7 6 4.1492 0.9804 -1.2602 8 7 5.4313 0.6878 -1.2547 9 14 3.1494 0.7682 -2.8238 10 1 4.0280 0.2610 -3.9082 11 1 2.0513 -0.2017 -2.5815 12 1 2.5741 2.0772 -3.2250 13 8 1.6460 2.0951 1.2357 14 6 0.4628 2.7289 1.2397 15 8 -0.2212 2.7377 0.2438 16 6 -0.0129 3.4287 2.4867 17 7 -1.3215 4.0378 2.2359 18 6 -2.5457 3.2749 2.4921 19 6 -1.3991 5.2999 1.7696 20 8 -0.3837 5.9324 1.5568 21 8 -2.6017 5.8594 1.5386 22 6 -2.6094 7.2217 1.0362 23 6 -4.0325 7.6767 0.8398 24 6 -4.6610 7.4764 -0.3750 25 6 -5.9680 7.8895 -0.5534 26 6 -6.6433 8.5123 0.4796 27 6 -6.0132 8.7172 1.6928 28 6 -4.7076 8.2999 1.8728 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 5.9664 0.8676 -0.4659 35 1 -0.0983 2.7064 3.2986 36 1 0.7019 4.2037 2.7637 37 1 -2.8688 3.4408 3.5198 38 1 -3.3281 3.6030 1.8077 39 1 -2.3510 2.2134 2.3394 40 1 -2.1147 7.8764 1.7536 41 1 -2.0805 7.2607 0.0839 42 1 -4.1318 6.9941 -1.1836 43 1 -6.4602 7.7297 -1.5014 44 1 -7.6630 8.8389 0.3387 45 1 -6.5405 9.2041 2.4997 46 1 -4.2152 8.4604 2.8205 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495738145.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:55 Heat of formation + Delta-G solvation = -155.989251 kcal Electronic energy + Delta-G solvation = -28799.401358 eV Core-core repulsion = 24653.890671 eV Total energy + Delta-G solvation = -4145.510687 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.03354 -41.29523 -40.13555 -38.35741 -37.50127 -36.64764 -35.56546 -33.90211 -33.17706 -31.86587 -30.55221 -29.32406 -28.09282 -26.93436 -24.59318 -23.55295 -23.50375 -22.36839 -21.93199 -21.22891 -19.96711 -19.32832 -18.90318 -18.48973 -17.86268 -17.57685 -17.37484 -17.08288 -16.22265 -16.07303 -15.93079 -15.66006 -15.05009 -14.87671 -14.81274 -14.65050 -14.43577 -14.32846 -14.15064 -13.93100 -13.81102 -13.51701 -13.39293 -13.36341 -13.03058 -12.98995 -12.74122 -12.43524 -12.15098 -12.11667 -11.94842 -11.83376 -11.75725 -11.71058 -11.57357 -11.32899 -10.87916 -10.60640 -10.10697 -9.88813 -9.88418 -8.95359 -6.57808 0.07584 0.43979 0.95257 1.23371 1.34720 1.43034 1.49864 1.62059 2.06776 2.31563 2.63611 2.88465 3.00112 3.63047 3.75050 3.77210 3.95795 4.06792 4.13592 4.16487 4.18734 4.21559 4.23579 4.25435 4.28328 4.36150 4.56922 4.58438 4.65264 4.67262 4.87426 4.96720 4.99801 5.05332 5.06575 5.07773 5.09429 5.12968 5.39981 5.46260 5.48817 5.55335 5.56258 5.82086 5.94032 6.00542 6.02385 6.37034 6.84776 7.01281 7.19668 8.46474 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.018384 B = 0.002434 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.678362 B =11499.944293 C =11879.045690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.144 4.144 3 C 0.203 3.797 4 H 0.021 0.979 5 C -0.617 4.617 6 H 0.031 0.969 7 C -0.004 4.004 8 N -0.919 5.919 9 Si 1.070 2.930 10 H -0.272 1.272 11 H -0.233 1.233 12 H -0.277 1.277 13 O -0.356 6.356 14 C 0.428 3.572 15 O -0.533 6.533 16 C 0.145 3.855 17 N -0.579 5.579 18 C 0.083 3.917 19 C 0.649 3.351 20 O -0.605 6.605 21 O -0.354 6.354 22 C 0.125 3.875 23 C -0.114 4.114 24 C -0.110 4.110 25 C -0.130 4.130 26 C -0.109 4.109 27 C -0.126 4.126 28 C -0.101 4.101 29 H 0.047 0.953 30 H 0.044 0.956 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.259 0.741 35 H 0.176 0.824 36 H 0.125 0.875 37 H 0.093 0.907 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.067 0.933 42 H 0.121 0.879 43 H 0.143 0.857 44 H 0.150 0.850 45 H 0.150 0.850 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.108 11.538 9.042 31.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.182 4.182 3 C 0.149 3.851 4 H 0.039 0.961 5 C -0.655 4.655 6 H 0.050 0.950 7 C -0.204 4.204 8 N -0.553 5.553 9 Si 0.891 3.109 10 H -0.197 1.197 11 H -0.157 1.157 12 H -0.203 1.203 13 O -0.272 6.272 14 C 0.270 3.730 15 O -0.423 6.423 16 C 0.021 3.979 17 N -0.319 5.319 18 C -0.058 4.058 19 C 0.405 3.595 20 O -0.496 6.496 21 O -0.268 6.268 22 C 0.051 3.949 23 C -0.114 4.114 24 C -0.128 4.128 25 C -0.147 4.147 26 C -0.127 4.127 27 C -0.144 4.144 28 C -0.119 4.119 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.193 0.807 36 H 0.143 0.857 37 H 0.112 0.888 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.086 0.914 42 H 0.139 0.861 43 H 0.161 0.839 44 H 0.168 0.832 45 H 0.168 0.832 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -27.920 11.223 7.098 30.917 hybrid contribution 1.052 0.737 1.263 1.801 sum -26.868 11.960 8.361 30.575 Atomic orbital electron populations 1.21789 0.94573 1.01846 1.01206 1.22304 0.96253 0.96806 1.02823 1.20649 0.93799 0.89905 0.80785 0.96110 1.22119 0.90914 1.48722 1.03717 0.95039 1.26984 0.97587 0.91918 1.03923 1.70965 1.08114 1.42769 1.33434 0.83778 0.75561 0.78809 0.72768 1.19707 1.15727 1.20295 1.86500 1.35994 1.62963 1.41746 1.24991 0.79678 0.76432 0.91885 1.90589 1.56432 1.58872 1.36424 1.21138 0.84537 0.99662 0.92533 1.46323 1.08405 1.10433 1.66710 1.22070 0.83887 0.96537 1.03274 1.18209 0.82079 0.82914 0.76348 1.91003 1.36656 1.63972 1.57994 1.86298 1.29558 1.32161 1.78787 1.21855 0.95120 0.78028 0.99859 1.19506 0.94202 1.01937 0.95730 1.21291 0.95890 0.98795 0.96865 1.21453 0.94015 0.98685 1.00584 1.21634 1.01058 0.97122 0.92894 1.21506 0.94388 0.99928 0.98577 1.21314 0.95319 0.97071 0.98213 0.93422 0.93733 0.90760 0.90898 0.91760 0.93189 0.80714 0.85682 0.88826 0.90690 0.89713 0.89625 0.91422 0.86083 0.83903 0.83197 0.83204 0.84653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.90 8.56 71.98 0.62 -4.28 16 2 C -0.14 -6.30 5.32 30.59 0.16 -6.14 16 3 C 0.20 10.37 1.84 29.84 0.05 10.42 16 4 H 0.02 1.14 5.84 -2.39 -0.01 1.13 16 5 C -0.62 -36.80 9.17 25.60 0.23 -36.57 16 6 H 0.03 2.05 8.06 -2.91 -0.02 2.03 16 7 C 0.00 -0.22 5.33 84.66 0.45 0.23 16 8 N -0.92 -57.40 13.70 21.45 0.29 -57.10 16 9 Si 1.07 50.99 26.27 68.60 1.80 52.79 16 10 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 11 H -0.23 -9.73 5.61 99.48 0.56 -9.17 16 12 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 13 O -0.36 -16.39 9.80 -51.35 -0.50 -16.89 16 14 C 0.43 16.59 6.46 71.24 0.46 17.05 16 15 O -0.53 -23.13 13.57 21.97 0.30 -22.83 16 16 C 0.14 3.88 6.00 85.63 0.51 4.40 16 17 N -0.58 -15.09 2.36 -981.64 -2.32 -17.41 16 18 C 0.08 1.45 10.44 127.77 1.33 2.78 16 19 C 0.65 20.33 8.39 129.79 1.09 21.42 16 20 O -0.60 -23.41 15.71 19.81 0.31 -23.10 16 21 O -0.35 -9.46 9.03 -55.45 -0.50 -9.96 16 22 C 0.13 2.93 5.60 71.24 0.40 3.32 16 23 C -0.11 -2.20 5.52 -19.87 -0.11 -2.31 16 24 C -0.11 -2.02 9.70 22.27 0.22 -1.80 16 25 C -0.13 -1.81 10.05 22.27 0.22 -1.59 16 26 C -0.11 -1.25 10.05 22.27 0.22 -1.02 16 27 C -0.13 -1.50 10.05 22.27 0.22 -1.27 16 28 C -0.10 -1.56 9.70 22.27 0.22 -1.34 16 29 H 0.05 1.61 6.07 -2.38 -0.01 1.60 16 30 H 0.04 1.68 7.77 -2.38 -0.02 1.66 16 31 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.07 3.25 4.67 -2.39 -0.01 3.24 16 33 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 34 H 0.26 16.32 8.73 -92.71 -0.81 15.51 16 35 H 0.18 2.90 8.07 -2.39 -0.02 2.88 16 36 H 0.13 3.48 7.42 -2.38 -0.02 3.46 16 37 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 38 H 0.07 1.40 7.37 -2.39 -0.02 1.38 16 39 H 0.08 1.34 8.07 -2.39 -0.02 1.32 16 40 H 0.09 1.86 8.08 -2.39 -0.02 1.84 16 41 H 0.07 1.73 8.08 -2.38 -0.02 1.71 16 42 H 0.12 2.21 8.06 -2.91 -0.02 2.18 16 43 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 44 H 0.15 0.88 8.06 -2.91 -0.02 0.85 16 45 H 0.15 0.97 8.06 -2.91 -0.02 0.95 16 46 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -80.38 385.39 6.49 -73.90 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 0.79 Total: 17.28 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: 6.31 Total: 3.31 kcal Atomic # 7 Polarization: -72.48 SS G_CDS: -2.02 Total: -74.51 kcal Atomic # 8 Polarization: -72.38 SS G_CDS: -0.39 Total: -72.77 kcal Atomic # 14 Polarization: 50.99 SS G_CDS: 1.80 Total: 52.79 kcal Total: -80.38 6.49 -73.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495738145.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.092 kcal (2) G-P(sol) polarization free energy of solvation -80.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds