Wall clock time and date at job start Tue Mar 31 2020 19:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47122 * 2 1 4 4 C 1.52999 * 109.47145 * 239.99399 * 2 1 3 5 5 O 1.45203 * 109.47058 * 119.99409 * 2 1 3 6 6 C 1.34645 * 116.99929 * 60.00147 * 5 2 1 7 7 O 1.21515 * 119.99699 * 359.97438 * 6 5 2 8 8 N 1.34777 * 120.00164 * 179.97438 * 6 5 2 9 9 C 1.46497 * 119.99785 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.46801 * 180.02562 * 9 8 6 11 11 C 1.50702 * 109.46809 * 180.02562 * 10 9 8 12 12 C 1.37951 * 120.07849 * 98.61560 * 11 10 9 13 13 C 1.38352 * 120.15595 * 179.97438 * 12 11 10 14 14 C 1.38396 * 120.30993 * 0.02562 * 13 12 11 15 15 C 1.37917 * 120.15259 * 0.02562 * 14 13 12 16 16 C 1.39648 * 120.07944 * 278.33534 * 11 10 9 17 17 C 1.47660 * 120.15111 * 0.02562 * 16 11 10 18 18 O 1.21511 * 120.00257 * 5.44465 * 17 16 11 19 19 O 1.34735 * 120.00220 * 185.44704 * 17 16 11 20 20 C 1.34848 * 117.00342 * 180.02562 * 19 17 16 21 21 H 1.08003 * 120.00181 * 359.97438 * 20 19 17 22 22 C 1.38813 * 120.00468 * 180.02562 * 20 19 17 23 23 N 1.31417 * 119.99526 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 120.00406 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47421 * 60.00005 * 24 22 20 26 26 H 1.48502 * 109.47318 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47072 * 299.99813 * 24 22 20 28 28 H 1.09004 * 109.46863 * 300.00284 * 1 2 3 29 29 H 1.08988 * 109.47036 * 60.00047 * 1 2 3 30 30 H 1.08999 * 109.47061 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47075 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.46714 * 299.99698 * 3 2 1 33 33 H 1.08994 * 109.47143 * 59.99709 * 3 2 1 34 34 H 1.08995 * 109.46940 * 300.00187 * 4 2 1 35 35 H 1.09001 * 109.46556 * 60.00066 * 4 2 1 36 36 H 1.08996 * 109.47147 * 180.02562 * 4 2 1 37 37 H 0.96998 * 119.99490 * 0.02562 * 8 6 5 38 38 H 1.08994 * 109.47185 * 60.00181 * 9 8 6 39 39 H 1.08996 * 109.47327 * 300.00385 * 9 8 6 40 40 H 1.09003 * 109.47100 * 60.00450 * 10 9 8 41 41 H 1.08996 * 109.47200 * 300.00102 * 10 9 8 42 42 H 1.08004 * 119.92219 * 359.97438 * 12 11 10 43 43 H 1.08000 * 119.84886 * 179.97438 * 13 12 11 44 44 H 1.07999 * 119.92541 * 179.97438 * 14 13 12 45 45 H 1.08000 * 120.07736 * 180.02562 * 15 14 13 46 46 H 0.96995 * 119.99878 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 8 2.0140 -0.6844 1.1857 6 6 1.6523 -1.9723 1.3385 7 8 0.9509 -2.5094 0.5042 8 7 2.0680 -2.6656 2.4169 9 6 1.6739 -4.0667 2.5835 10 6 2.2741 -4.6146 3.8798 11 6 1.8692 -6.0561 4.0508 12 6 2.7385 -7.0656 3.6926 13 6 2.3686 -8.3895 3.8494 14 6 1.1253 -8.7110 4.3656 15 6 0.2458 -7.7119 4.7268 16 6 0.6153 -6.3731 4.5777 17 6 -0.3183 -5.2980 4.9686 18 8 -0.0382 -4.1377 4.7414 19 8 -1.4808 -5.6036 5.5772 20 6 -2.2880 -4.5750 5.9072 21 1 -1.9906 -3.5614 5.6822 22 6 -3.5007 -4.8187 6.5372 23 7 -3.8624 -6.0520 6.8115 24 14 -4.6185 -3.3939 6.9949 25 1 -4.9953 -2.6465 5.7683 26 1 -5.8431 -3.9167 7.6523 27 1 -3.9055 -2.4856 7.9286 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9564 0.8899 34 1 1.6767 -1.7490 -1.2490 35 1 1.6767 -0.2076 -2.1391 36 1 3.1300 -0.7218 -1.2489 37 1 2.6276 -2.2366 3.0830 38 1 2.0396 -4.6499 1.7384 39 1 0.5871 -4.1355 2.6291 40 1 1.9079 -4.0313 4.7247 41 1 3.3609 -4.5458 3.8345 42 1 3.7101 -6.8219 3.2889 43 1 3.0529 -9.1759 3.5670 44 1 0.8428 -9.7465 4.4849 45 1 -0.7239 -7.9641 5.1299 46 1 -4.7100 -6.2224 7.2513 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496992846.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:46 Heat of formation + Delta-G solvation = -140.203231 kcal Electronic energy + Delta-G solvation = -29066.325840 eV Core-core repulsion = 24921.499687 eV Total energy + Delta-G solvation = -4144.826153 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.61074 -39.79263 -38.15001 -37.37880 -35.53594 -34.80753 -33.99946 -32.34947 -32.11250 -30.88231 -28.37543 -27.50517 -27.40760 -25.65240 -24.02494 -23.14390 -21.83022 -21.24814 -20.15694 -19.71688 -18.04346 -17.78094 -17.11866 -16.56733 -16.12977 -15.69460 -15.28533 -15.11564 -14.84544 -14.58677 -14.49061 -14.35193 -14.24993 -13.85706 -13.51706 -13.44178 -12.86160 -12.61086 -12.57541 -12.41975 -12.25731 -11.96522 -11.92045 -11.73621 -11.58318 -11.51913 -11.33840 -11.32879 -11.25144 -11.01796 -10.78465 -10.49887 -10.40434 -10.30215 -9.92398 -9.87273 -8.90795 -8.84731 -8.65395 -8.60869 -8.48767 -6.49484 -4.11715 1.21906 1.60083 2.34330 3.05810 3.12326 3.15808 3.19551 3.49432 3.88952 4.23004 4.31120 4.51597 4.65609 4.69327 4.84164 5.00960 5.07991 5.11066 5.26238 5.34017 5.35557 5.38142 5.45305 5.55583 5.58248 5.61246 5.69010 5.75356 5.81094 5.82123 5.88755 6.02569 6.17866 6.23666 6.29753 6.33947 6.39643 6.55303 6.58777 6.63157 6.69046 6.74838 7.02550 7.17992 7.35033 7.63931 7.88797 8.58450 8.66776 8.99366 9.79158 10.68069 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.008270 B = 0.003725 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3385.109641 B = 7514.379706 C =10391.275887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.136 3.864 3 C -0.140 4.140 4 C -0.183 4.183 5 O -0.368 6.368 6 C 0.649 3.351 7 O -0.570 6.570 8 N -0.701 5.701 9 C 0.154 3.846 10 C -0.094 4.094 11 C -0.037 4.037 12 C -0.129 4.129 13 C -0.107 4.107 14 C -0.134 4.134 15 C -0.071 4.071 16 C -0.084 4.084 17 C 0.428 3.572 18 O -0.544 6.544 19 O -0.204 6.204 20 C -0.373 4.373 21 H 0.098 0.902 22 C 0.042 3.958 23 N -0.859 5.859 24 Si 0.944 3.056 25 H -0.269 1.269 26 H -0.278 1.278 27 H -0.269 1.269 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.403 0.597 38 H 0.059 0.941 39 H 0.086 0.914 40 H 0.111 0.889 41 H 0.065 0.935 42 H 0.124 0.876 43 H 0.121 0.879 44 H 0.124 0.876 45 H 0.141 0.859 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.752 4.681 -9.892 17.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.240 4.240 5 O -0.283 6.283 6 C 0.402 3.598 7 O -0.460 6.460 8 N -0.358 5.358 9 C 0.032 3.968 10 C -0.131 4.131 11 C -0.038 4.038 12 C -0.147 4.147 13 C -0.125 4.125 14 C -0.152 4.152 15 C -0.089 4.089 16 C -0.085 4.085 17 C 0.277 3.723 18 O -0.443 6.443 19 O -0.110 6.110 20 C -0.449 4.449 21 H 0.115 0.885 22 C -0.163 4.163 23 N -0.495 5.495 24 Si 0.769 3.231 25 H -0.194 1.194 26 H -0.203 1.203 27 H -0.194 1.194 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.108 0.892 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.238 0.762 38 H 0.077 0.923 39 H 0.104 0.896 40 H 0.129 0.871 41 H 0.084 0.916 42 H 0.142 0.858 43 H 0.139 0.861 44 H 0.142 0.858 45 H 0.159 0.841 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 13.236 4.641 -10.298 17.400 hybrid contribution -0.408 0.715 0.542 0.986 sum 12.828 5.356 -9.756 16.983 Atomic orbital electron populations 1.22524 0.93954 1.05387 1.02348 1.22011 0.94471 0.91366 0.82214 1.21849 1.02017 0.92782 1.03041 1.22511 1.01290 1.03698 0.96477 1.86282 1.71732 1.23978 1.46331 1.18048 0.78946 0.80287 0.82549 1.90889 1.40957 1.70435 1.43670 1.44664 1.55046 1.13000 1.23137 1.21264 1.01951 0.77531 0.96091 1.20914 0.99348 0.92978 0.99909 1.19601 0.92565 0.95092 0.96507 1.20892 0.99530 0.92326 1.01980 1.21214 0.96482 0.96138 0.98715 1.21123 0.94177 0.99346 1.00532 1.21635 1.00152 0.91477 0.95656 1.19309 0.93881 0.92985 1.02348 1.20738 0.83097 0.87626 0.80878 1.90573 1.75873 1.21332 1.56554 1.83886 1.25689 1.38923 1.62520 1.21244 0.98143 0.87268 1.38228 0.88484 1.25369 0.96735 0.98105 0.96075 1.69961 1.22292 1.19081 1.38137 0.85727 0.78636 0.79629 0.79152 1.19382 1.20287 1.19400 0.92057 0.91365 0.89162 0.91635 0.90312 0.91458 0.89283 0.91339 0.92367 0.76240 0.92276 0.89601 0.87052 0.91619 0.85826 0.86109 0.85788 0.84105 0.91839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.35 8.37 37.16 0.31 -2.04 16 2 C 0.14 1.65 1.13 -90.62 -0.10 1.55 16 3 C -0.14 -1.24 8.85 37.16 0.33 -0.91 16 4 C -0.18 -2.06 8.37 37.16 0.31 -1.75 16 5 O -0.37 -5.33 9.94 -40.34 -0.40 -5.73 16 6 C 0.65 10.72 8.06 54.06 0.44 11.15 16 7 O -0.57 -10.74 11.88 -19.28 -0.23 -10.97 16 8 N -0.70 -10.60 5.56 -65.28 -0.36 -10.97 16 9 C 0.15 2.52 5.19 -4.04 -0.02 2.50 16 10 C -0.09 -1.43 4.72 -27.88 -0.13 -1.56 16 11 C -0.04 -0.60 5.17 -104.20 -0.54 -1.14 16 12 C -0.13 -1.72 9.66 -39.64 -0.38 -2.10 16 13 C -0.11 -1.34 10.04 -39.48 -0.40 -1.74 16 14 C -0.13 -1.89 10.03 -39.64 -0.40 -2.29 16 15 C -0.07 -1.27 9.62 -39.16 -0.38 -1.64 16 16 C -0.08 -1.65 5.87 -104.99 -0.62 -2.27 16 17 C 0.43 10.42 7.70 34.58 0.27 10.69 16 18 O -0.54 -13.50 10.83 -19.28 -0.21 -13.71 16 19 O -0.20 -5.71 9.01 -21.63 -0.19 -5.91 16 20 C -0.37 -10.80 9.65 30.95 0.30 -10.50 16 21 H 0.10 2.82 6.86 -52.48 -0.36 2.46 16 22 C 0.04 1.16 5.49 -17.52 -0.10 1.07 16 23 N -0.86 -24.61 13.67 55.49 0.76 -23.85 16 24 Si 0.94 21.09 29.55 -169.99 -5.02 16.06 16 25 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 26 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 27 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.69 8.14 -51.94 -0.42 0.27 16 30 H 0.09 1.42 5.88 -51.93 -0.31 1.12 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.09 1.24 5.88 -51.93 -0.31 0.94 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.40 5.10 8.58 -40.82 -0.35 4.75 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.09 1.77 6.56 -51.93 -0.34 1.43 16 40 H 0.11 1.96 5.97 -51.93 -0.31 1.65 16 41 H 0.07 0.77 8.02 -51.93 -0.42 0.36 16 42 H 0.12 1.29 8.04 -52.48 -0.42 0.86 16 43 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 44 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 45 H 0.14 2.70 7.63 -52.49 -0.40 2.30 16 46 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 382.66 15.07 5.77 5.77 Total: -1.00 -32.94 382.66 -7.58 -40.51 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -6.57 Total: 9.78 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -1.11 Total: -0.98 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 0.40 Total: -34.82 kcal Atomic # 8 Polarization: -35.28 SS G_CDS: -1.03 Total: -36.32 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.94 -7.58 -40.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496992846.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.690 kcal (2) G-P(sol) polarization free energy of solvation -32.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds