Wall clock time and date at job start Tue Mar 31 2020 19:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47122 * 2 1 4 4 C 1.52999 * 109.47145 * 239.99399 * 2 1 3 5 5 O 1.45203 * 109.47058 * 119.99409 * 2 1 3 6 6 C 1.34645 * 116.99929 * 60.00147 * 5 2 1 7 7 O 1.21515 * 119.99699 * 359.97438 * 6 5 2 8 8 N 1.34777 * 120.00164 * 179.97438 * 6 5 2 9 9 C 1.46497 * 119.99785 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.46801 * 180.02562 * 9 8 6 11 11 C 1.50702 * 109.46809 * 180.02562 * 10 9 8 12 12 C 1.37951 * 120.07849 * 98.61560 * 11 10 9 13 13 C 1.38352 * 120.15595 * 179.97438 * 12 11 10 14 14 C 1.38396 * 120.30993 * 0.02562 * 13 12 11 15 15 C 1.37917 * 120.15259 * 0.02562 * 14 13 12 16 16 C 1.39648 * 120.07944 * 278.33534 * 11 10 9 17 17 C 1.47660 * 120.15111 * 0.02562 * 16 11 10 18 18 O 1.21511 * 120.00257 * 5.44465 * 17 16 11 19 19 O 1.34735 * 120.00220 * 185.44704 * 17 16 11 20 20 C 1.34848 * 117.00342 * 180.02562 * 19 17 16 21 21 H 1.08003 * 120.00181 * 359.97438 * 20 19 17 22 22 C 1.38813 * 120.00468 * 180.02562 * 20 19 17 23 23 N 1.31417 * 119.99526 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 120.00406 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47421 * 60.00005 * 24 22 20 26 26 H 1.48502 * 109.47318 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47072 * 299.99813 * 24 22 20 28 28 H 1.09004 * 109.46863 * 300.00284 * 1 2 3 29 29 H 1.08988 * 109.47036 * 60.00047 * 1 2 3 30 30 H 1.08999 * 109.47061 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47075 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.46714 * 299.99698 * 3 2 1 33 33 H 1.08994 * 109.47143 * 59.99709 * 3 2 1 34 34 H 1.08995 * 109.46940 * 300.00187 * 4 2 1 35 35 H 1.09001 * 109.46556 * 60.00066 * 4 2 1 36 36 H 1.08996 * 109.47147 * 180.02562 * 4 2 1 37 37 H 0.96998 * 119.99490 * 0.02562 * 8 6 5 38 38 H 1.08994 * 109.47185 * 60.00181 * 9 8 6 39 39 H 1.08996 * 109.47327 * 300.00385 * 9 8 6 40 40 H 1.09003 * 109.47100 * 60.00450 * 10 9 8 41 41 H 1.08996 * 109.47200 * 300.00102 * 10 9 8 42 42 H 1.08004 * 119.92219 * 359.97438 * 12 11 10 43 43 H 1.08000 * 119.84886 * 179.97438 * 13 12 11 44 44 H 1.07999 * 119.92541 * 179.97438 * 14 13 12 45 45 H 1.08000 * 120.07736 * 180.02562 * 15 14 13 46 46 H 0.96995 * 119.99878 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 8 2.0140 -0.6844 1.1857 6 6 1.6523 -1.9723 1.3385 7 8 0.9509 -2.5094 0.5042 8 7 2.0680 -2.6656 2.4169 9 6 1.6739 -4.0667 2.5835 10 6 2.2741 -4.6146 3.8798 11 6 1.8692 -6.0561 4.0508 12 6 2.7385 -7.0656 3.6926 13 6 2.3686 -8.3895 3.8494 14 6 1.1253 -8.7110 4.3656 15 6 0.2458 -7.7119 4.7268 16 6 0.6153 -6.3731 4.5777 17 6 -0.3183 -5.2980 4.9686 18 8 -0.0382 -4.1377 4.7414 19 8 -1.4808 -5.6036 5.5772 20 6 -2.2880 -4.5750 5.9072 21 1 -1.9906 -3.5614 5.6822 22 6 -3.5007 -4.8187 6.5372 23 7 -3.8624 -6.0520 6.8115 24 14 -4.6185 -3.3939 6.9949 25 1 -4.9953 -2.6465 5.7683 26 1 -5.8431 -3.9167 7.6523 27 1 -3.9055 -2.4856 7.9286 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9564 0.8899 34 1 1.6767 -1.7490 -1.2490 35 1 1.6767 -0.2076 -2.1391 36 1 3.1300 -0.7218 -1.2489 37 1 2.6276 -2.2366 3.0830 38 1 2.0396 -4.6499 1.7384 39 1 0.5871 -4.1355 2.6291 40 1 1.9079 -4.0313 4.7247 41 1 3.3609 -4.5458 3.8345 42 1 3.7101 -6.8219 3.2889 43 1 3.0529 -9.1759 3.5670 44 1 0.8428 -9.7465 4.4849 45 1 -0.7239 -7.9641 5.1299 46 1 -4.7100 -6.2224 7.2513 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496992846.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:45 Heat of formation + Delta-G solvation = -161.614742 kcal Electronic energy + Delta-G solvation = -29067.254313 eV Core-core repulsion = 24921.499687 eV Total energy + Delta-G solvation = -4145.754626 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.83838 -41.40890 -39.76560 -38.55097 -37.31600 -36.30406 -35.06762 -34.35016 -33.44961 -32.22567 -29.64835 -28.38412 -28.29547 -27.66095 -25.43050 -24.53088 -23.03711 -22.68697 -21.58978 -20.95148 -19.87801 -19.25853 -18.78339 -17.73362 -17.40061 -17.21255 -16.76652 -16.51822 -16.41131 -16.11778 -16.01150 -15.61077 -15.44689 -15.28362 -14.87661 -14.48420 -14.24902 -14.01441 -13.84447 -13.63116 -13.35104 -13.20685 -13.16006 -12.93493 -12.87146 -12.77703 -12.68696 -12.54764 -12.48473 -12.33439 -12.23225 -12.14959 -12.06357 -11.88343 -11.40491 -11.15105 -10.74951 -10.68528 -10.19138 -9.91487 -9.74251 -8.57909 -6.34014 -0.13454 0.39108 1.17964 1.29775 1.35761 1.45559 1.75599 1.86286 2.08079 2.75267 2.79618 3.03376 3.17008 3.74810 3.78948 3.85522 3.85983 3.94001 4.05587 4.18559 4.24536 4.32359 4.45350 4.52542 4.57748 4.60099 4.69541 4.73572 4.74861 4.82516 4.87090 4.91237 5.00077 5.02101 5.08685 5.17393 5.18482 5.25058 5.27444 5.36078 5.44247 5.52221 5.56858 5.65905 5.80516 6.00689 6.40825 6.65588 6.87257 7.33712 7.75692 8.62943 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.008270 B = 0.003725 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3385.109641 B = 7514.379706 C =10391.275887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.122 3.878 3 C -0.133 4.133 4 C -0.177 4.177 5 O -0.368 6.368 6 C 0.644 3.356 7 O -0.598 6.598 8 N -0.694 5.694 9 C 0.164 3.836 10 C -0.086 4.086 11 C -0.041 4.041 12 C -0.118 4.118 13 C -0.081 4.081 14 C -0.128 4.128 15 C -0.090 4.090 16 C -0.126 4.126 17 C 0.427 3.573 18 O -0.555 6.555 19 O -0.239 6.239 20 C -0.415 4.415 21 H 0.081 0.919 22 C -0.004 4.004 23 N -0.900 5.900 24 Si 1.015 2.985 25 H -0.265 1.265 26 H -0.257 1.257 27 H -0.260 1.260 28 H 0.054 0.946 29 H 0.095 0.905 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.416 0.584 38 H 0.072 0.928 39 H 0.033 0.967 40 H 0.080 0.920 41 H 0.113 0.887 42 H 0.169 0.831 43 H 0.172 0.828 44 H 0.155 0.845 45 H 0.110 0.890 46 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.908 4.711 -11.208 20.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.086 3.914 3 C -0.190 4.190 4 C -0.234 4.234 5 O -0.283 6.283 6 C 0.397 3.603 7 O -0.490 6.490 8 N -0.353 5.353 9 C 0.042 3.958 10 C -0.123 4.123 11 C -0.042 4.042 12 C -0.135 4.135 13 C -0.099 4.099 14 C -0.146 4.146 15 C -0.108 4.108 16 C -0.127 4.127 17 C 0.277 3.723 18 O -0.454 6.454 19 O -0.148 6.148 20 C -0.491 4.491 21 H 0.099 0.901 22 C -0.204 4.204 23 N -0.537 5.537 24 Si 0.833 3.167 25 H -0.190 1.190 26 H -0.181 1.181 27 H -0.184 1.184 28 H 0.073 0.927 29 H 0.114 0.886 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.123 0.877 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.111 0.889 36 H 0.087 0.913 37 H 0.252 0.748 38 H 0.090 0.910 39 H 0.051 0.949 40 H 0.099 0.901 41 H 0.132 0.868 42 H 0.187 0.813 43 H 0.190 0.810 44 H 0.172 0.828 45 H 0.129 0.871 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 16.432 4.684 -11.610 20.657 hybrid contribution -1.164 0.623 0.797 1.542 sum 15.268 5.307 -10.813 19.447 Atomic orbital electron populations 1.22502 0.94896 1.03237 1.03443 1.22464 0.94035 0.93142 0.81763 1.21876 1.02676 0.90162 1.04276 1.22452 1.01896 1.01996 0.97081 1.86303 1.71556 1.22724 1.47672 1.18258 0.78634 0.80941 0.82458 1.90883 1.42109 1.71220 1.44763 1.44591 1.54869 1.12694 1.23171 1.21020 0.98883 0.78534 0.97412 1.20833 1.01867 0.91951 0.97636 1.19852 0.91604 0.96604 0.96094 1.21404 1.00314 0.91692 1.00102 1.21822 0.95794 0.97169 0.95108 1.21465 0.94161 0.99670 0.99316 1.21543 1.00175 0.91991 0.97103 1.19265 0.94832 0.92200 1.06436 1.21858 0.82578 0.89076 0.78773 1.90544 1.75995 1.22522 1.56306 1.83918 1.27313 1.39016 1.64537 1.21386 0.99837 0.87064 1.40817 0.90081 1.26514 0.97506 1.01282 0.95101 1.70051 1.23234 1.21193 1.39240 0.84731 0.76844 0.76013 0.79065 1.19015 1.18112 1.18403 0.92664 0.88579 0.92822 0.90585 0.87692 0.91609 0.92394 0.88854 0.91272 0.74778 0.90974 0.94860 0.90144 0.86849 0.81334 0.81022 0.82761 0.87145 0.91141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.71 8.37 71.98 0.60 -4.11 16 2 C 0.12 2.85 1.13 -10.79 -0.01 2.83 16 3 C -0.13 -2.03 8.85 71.98 0.64 -1.39 16 4 C -0.18 -3.79 8.37 71.98 0.60 -3.19 16 5 O -0.37 -10.61 9.94 -55.54 -0.55 -11.16 16 6 C 0.64 21.82 8.06 129.79 1.05 22.86 16 7 O -0.60 -23.64 11.88 19.79 0.24 -23.40 16 8 N -0.69 -21.30 5.56 -590.85 -3.29 -24.59 16 9 C 0.16 5.50 5.19 86.38 0.45 5.95 16 10 C -0.09 -2.54 4.72 29.85 0.14 -2.40 16 11 C -0.04 -1.28 5.17 -19.59 -0.10 -1.38 16 12 C -0.12 -2.57 9.66 22.23 0.21 -2.36 16 13 C -0.08 -1.61 10.04 22.33 0.22 -1.38 16 14 C -0.13 -3.30 10.03 22.23 0.22 -3.08 16 15 C -0.09 -3.32 9.62 22.54 0.22 -3.11 16 16 C -0.13 -5.20 5.87 -20.10 -0.12 -5.32 16 17 C 0.43 22.63 7.70 70.31 0.54 23.17 16 18 O -0.56 -29.89 10.83 19.80 0.21 -29.68 16 19 O -0.24 -14.68 9.01 11.38 0.10 -14.57 16 20 C -0.42 -25.98 9.65 67.96 0.66 -25.32 16 21 H 0.08 5.12 6.86 -2.91 -0.02 5.10 16 22 C 0.00 -0.21 5.49 84.89 0.47 0.26 16 23 N -0.90 -54.31 13.67 21.64 0.30 -54.02 16 24 Si 1.01 44.80 29.55 68.60 2.03 46.83 16 25 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 26 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 27 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 28 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 29 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.05 1.79 5.88 -2.39 -0.01 1.77 16 31 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.06 1.63 5.88 -2.39 -0.01 1.62 16 35 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.42 10.41 8.58 -92.71 -0.80 9.61 16 38 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.03 1.47 6.56 -2.39 -0.02 1.45 16 40 H 0.08 2.92 5.97 -2.39 -0.01 2.91 16 41 H 0.11 2.27 8.02 -2.39 -0.02 2.25 16 42 H 0.17 2.29 8.04 -2.91 -0.02 2.26 16 43 H 0.17 1.84 8.06 -2.91 -0.02 1.81 16 44 H 0.15 3.01 8.06 -2.91 -0.02 2.98 16 45 H 0.11 4.68 7.63 -2.91 -0.02 4.65 16 46 H 0.28 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -82.07 382.66 5.04 -77.03 By element: Atomic # 1 Polarization: 31.30 SS G_CDS: 0.21 Total: 31.51 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 5.79 Total: 2.04 kcal Atomic # 7 Polarization: -75.62 SS G_CDS: -2.99 Total: -78.61 kcal Atomic # 8 Polarization: -78.81 SS G_CDS: 0.00 Total: -78.81 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -82.07 5.04 -77.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496992846.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.585 kcal (2) G-P(sol) polarization free energy of solvation -82.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds