Wall clock time and date at job start Tue Mar 31 2020 19:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46886 * 2 1 4 4 H 1.08997 * 109.46842 * 57.50091 * 3 2 1 5 5 C 1.50702 * 109.47168 * 177.49991 * 3 2 1 6 6 H 1.07998 * 119.99918 * 119.99853 * 5 3 2 7 7 C 1.37876 * 119.99934 * 300.00400 * 5 3 2 8 8 N 1.31518 * 120.00157 * 179.97438 * 7 5 3 9 9 Si 1.86807 * 120.00106 * 359.97438 * 7 5 3 10 10 H 1.48503 * 109.46959 * 89.99932 * 9 7 5 11 11 H 1.48497 * 109.47221 * 210.00212 * 9 7 5 12 12 H 1.48494 * 109.46823 * 330.00390 * 9 7 5 13 13 N 1.46902 * 109.47120 * 297.49961 * 3 2 1 14 14 C 1.46904 * 110.99716 * 156.37587 * 13 3 2 15 15 H 1.08995 * 109.47143 * 32.27600 * 14 13 3 16 16 C 1.50697 * 109.46926 * 272.27722 * 14 13 3 17 17 O 1.20828 * 120.00396 * 335.08235 * 16 14 13 18 18 O 1.34229 * 119.99891 * 155.08317 * 16 14 13 19 19 C 1.45206 * 116.99894 * 179.97438 * 18 16 14 20 20 C 1.50698 * 109.47021 * 152.27607 * 14 13 3 21 21 C 1.38393 * 119.92265 * 39.99848 * 20 14 13 22 22 C 1.38344 * 120.30004 * 179.97438 * 21 20 14 23 23 C 1.37967 * 120.15215 * 0.02562 * 22 21 20 24 24 C 1.39604 * 119.84774 * 359.97438 * 23 22 21 25 25 C 1.47728 * 120.15261 * 180.02562 * 24 23 22 26 26 O 1.21466 * 120.00467 * 179.97438 * 25 24 23 27 27 O 1.34717 * 119.99566 * 0.02562 * 25 24 23 28 28 C 1.45199 * 116.99752 * 179.97438 * 27 25 24 29 29 C 1.37922 * 119.92500 * 219.72755 * 20 14 13 30 30 H 1.09001 * 109.47367 * 186.22632 * 1 2 3 31 31 H 1.09004 * 109.47213 * 66.22359 * 1 2 3 32 32 H 1.09000 * 109.47691 * 306.22672 * 1 2 3 33 33 H 1.08997 * 109.47001 * 120.00206 * 2 1 3 34 34 H 1.08995 * 109.47146 * 240.00177 * 2 1 3 35 35 H 0.96996 * 119.99815 * 179.97438 * 8 7 5 36 36 H 1.00894 * 110.99993 * 32.42282 * 13 3 2 37 37 H 1.08994 * 109.47714 * 300.00181 * 19 18 16 38 38 H 1.09001 * 109.46942 * 60.00831 * 19 18 16 39 39 H 1.09001 * 109.46741 * 180.02562 * 19 18 16 40 40 H 1.08002 * 119.84864 * 0.02562 * 21 20 14 41 41 H 1.08005 * 119.92280 * 180.02562 * 22 21 20 42 42 H 1.08004 * 120.07839 * 180.02562 * 23 22 21 43 43 H 1.08999 * 109.46895 * 179.97438 * 28 27 25 44 44 H 1.09000 * 109.47306 * 300.00215 * 28 27 25 45 45 H 1.09006 * 109.47155 * 59.99735 * 28 27 25 46 46 H 1.08000 * 120.07749 * 359.97438 * 29 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6404 1.9691 0.8667 5 6 3.5457 1.4431 0.0620 6 1 4.1186 1.8991 -0.7318 7 6 4.1918 0.8613 1.1321 8 7 5.5059 0.8613 1.1859 9 14 3.2007 0.0731 2.5054 10 1 2.9660 -1.3585 2.1877 11 1 3.9516 0.1802 3.7821 12 1 1.8967 0.7709 2.6380 13 7 1.6002 2.1174 -1.2285 14 6 1.5602 3.5742 -1.0434 15 1 2.3412 3.8732 -0.3445 16 6 0.2149 3.9740 -0.4945 17 8 -0.7498 3.2731 -0.6895 18 8 0.0883 5.1087 0.2112 19 6 -1.2371 5.4312 0.7088 20 6 1.7845 4.2553 -2.3689 21 6 1.2024 3.7434 -3.5153 22 6 1.4027 4.3627 -4.7361 23 6 2.1856 5.4957 -4.8182 24 6 2.7758 6.0174 -3.6657 25 6 3.6149 7.2307 -3.7457 26 8 4.1267 7.6826 -2.7412 27 8 3.8115 7.8364 -4.9329 28 6 4.6467 9.0241 -4.9365 29 6 2.5649 5.3905 -2.4357 30 1 -0.3634 -1.0216 0.1115 31 1 -0.3634 0.4143 -0.9405 32 1 -0.3634 0.6073 0.8290 33 1 1.8933 -0.5139 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 5.9603 0.4524 1.9390 36 1 0.7044 1.7668 -1.5328 37 1 -1.9262 5.5295 -0.1299 38 1 -1.5806 4.6355 1.3699 39 1 -1.1996 6.3709 1.2599 40 1 0.5883 2.8569 -3.4566 41 1 0.9451 3.9582 -5.6269 42 1 2.3408 5.9785 -5.7718 43 1 4.7232 9.4114 -5.9525 44 1 4.2033 9.7821 -4.2907 45 1 5.6410 8.7702 -4.5689 46 1 3.0147 5.7917 -1.5395 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594006876.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:37 Heat of formation + Delta-G solvation = -132.918402 kcal Electronic energy + Delta-G solvation = -29670.976440 eV Core-core repulsion = 25526.466181 eV Total energy + Delta-G solvation = -4144.510260 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.76847 -40.37377 -38.83384 -37.07336 -36.43004 -35.95941 -33.52371 -32.03654 -31.29767 -30.40695 -28.27220 -27.85433 -27.25171 -25.42587 -24.02091 -22.58512 -22.29733 -21.16837 -20.28622 -19.79046 -17.96277 -17.48753 -17.13892 -16.87960 -16.65133 -16.39968 -16.13074 -15.98859 -15.26844 -14.86450 -14.59030 -14.11816 -13.96800 -13.60859 -13.58799 -13.48918 -13.22892 -12.94065 -12.56731 -12.39827 -12.37960 -12.22931 -12.20042 -11.87145 -11.75224 -11.55688 -11.21571 -10.90970 -10.88376 -10.70862 -10.68549 -10.57337 -10.50805 -10.31579 -10.08705 -9.48960 -9.32898 -8.98362 -8.76032 -8.57440 -7.83622 -6.09070 -4.07948 0.74142 1.32595 2.32892 2.54592 2.59837 2.92021 3.22953 3.33787 3.35521 3.80451 4.36164 4.60106 4.64364 4.84359 4.91846 4.95328 5.03768 5.04117 5.12659 5.16101 5.20136 5.21419 5.32445 5.38074 5.49758 5.54975 5.62599 5.76747 5.82732 5.90957 5.93649 5.98110 6.19586 6.28133 6.39502 6.43135 6.51165 6.52694 6.57742 6.60256 6.74446 6.85144 7.02686 7.57055 7.61128 7.70251 7.89498 8.00594 8.61474 9.02671 9.52550 11.03703 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011210 B = 0.003799 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.067842 B = 7368.453638 C = 8314.269846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.134 4.134 3 C 0.187 3.813 4 H 0.002 0.998 5 C -0.504 4.504 6 H 0.086 0.914 7 C 0.072 3.928 8 N -0.894 5.894 9 Si 0.878 3.122 10 H -0.277 1.277 11 H -0.296 1.296 12 H -0.269 1.269 13 N -0.639 5.639 14 C 0.141 3.859 15 H 0.132 0.868 16 C 0.442 3.558 17 O -0.509 6.509 18 O -0.355 6.355 19 C 0.033 3.967 20 C -0.072 4.072 21 C -0.049 4.049 22 C -0.138 4.138 23 C -0.062 4.062 24 C -0.133 4.133 25 C 0.511 3.489 26 O -0.502 6.502 27 O -0.357 6.357 28 C 0.037 3.963 29 C -0.032 4.032 30 H 0.045 0.955 31 H 0.054 0.946 32 H 0.044 0.956 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.264 0.736 36 H 0.338 0.662 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.098 0.902 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.135 0.865 43 H 0.100 0.900 44 H 0.062 0.938 45 H 0.064 0.936 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.247 12.077 -10.677 19.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.172 4.172 3 C 0.078 3.922 4 H 0.020 0.980 5 C -0.542 4.542 6 H 0.104 0.896 7 C -0.130 4.130 8 N -0.532 5.532 9 Si 0.709 3.291 10 H -0.204 1.204 11 H -0.223 1.223 12 H -0.194 1.194 13 N -0.273 5.273 14 C 0.028 3.972 15 H 0.150 0.850 16 C 0.282 3.718 17 O -0.396 6.396 18 O -0.270 6.270 19 C -0.061 4.061 20 C -0.073 4.073 21 C -0.068 4.068 22 C -0.156 4.156 23 C -0.080 4.080 24 C -0.134 4.134 25 C 0.356 3.644 26 O -0.391 6.391 27 O -0.274 6.274 28 C -0.057 4.057 29 C -0.050 4.050 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.160 0.840 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.117 0.883 40 H 0.150 0.850 41 H 0.149 0.851 42 H 0.153 0.847 43 H 0.119 0.881 44 H 0.081 0.919 45 H 0.083 0.917 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -9.607 11.975 -10.590 18.650 hybrid contribution -1.264 -0.390 1.573 2.056 sum -10.872 11.585 -9.016 18.267 Atomic orbital electron populations 1.21892 0.97717 1.00460 1.01239 1.22094 0.93282 0.99758 1.02042 1.19776 0.97056 0.89679 0.85641 0.98043 1.20983 0.88158 1.37518 1.07537 0.89644 1.24919 0.94699 0.95786 0.97598 1.69876 1.07244 1.44882 1.31236 0.87000 0.80240 0.80062 0.81815 1.20424 1.22316 1.19407 1.60932 1.33110 0.98382 1.34871 1.20334 0.91280 0.91351 0.94268 0.85003 1.25462 0.93259 0.78243 0.74790 1.90597 1.40593 1.52189 1.56261 1.86605 1.34492 1.41364 1.64552 1.23229 0.82077 1.01569 0.99228 1.19298 0.98789 0.94942 0.94261 1.21320 0.95921 0.97867 0.91653 1.21102 1.00249 0.96248 0.97960 1.21409 0.94013 0.95035 0.97561 1.18924 1.03337 0.95934 0.95243 1.21236 0.78695 0.83370 0.81137 1.90853 1.47424 1.64421 1.36377 1.86531 1.65290 1.41531 1.34063 1.23263 0.94198 0.84727 1.03510 1.21153 0.94045 0.92764 0.97075 0.93598 0.92703 0.93701 0.92689 0.90988 0.92573 0.83967 0.92177 0.92085 0.88339 0.84983 0.85067 0.84675 0.88111 0.91888 0.91725 0.83941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 9.57 37.16 0.36 -2.42 16 2 C -0.13 -2.84 5.07 -26.73 -0.14 -2.97 16 3 C 0.19 4.25 1.47 -68.86 -0.10 4.14 16 4 H 0.00 0.05 6.81 -51.93 -0.35 -0.30 16 5 C -0.50 -13.65 9.02 -34.44 -0.31 -13.97 16 6 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 7 C 0.07 2.03 5.45 -17.82 -0.10 1.94 16 8 N -0.89 -26.87 13.96 55.43 0.77 -26.10 16 9 Si 0.88 21.56 24.40 -169.99 -4.15 17.42 16 10 H -0.28 -6.63 6.85 56.52 0.39 -6.24 16 11 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.27 -6.40 6.53 56.52 0.37 -6.03 16 13 N -0.64 -12.49 5.42 -103.39 -0.56 -13.05 16 14 C 0.14 2.53 2.49 -70.02 -0.17 2.35 16 15 H 0.13 2.57 7.42 -51.93 -0.39 2.19 16 16 C 0.44 7.62 6.94 36.00 0.25 7.87 16 17 O -0.51 -9.19 15.54 -18.75 -0.29 -9.48 16 18 O -0.36 -5.59 10.57 -39.25 -0.41 -6.01 16 19 C 0.03 0.39 10.56 101.05 1.07 1.46 16 20 C -0.07 -1.14 4.93 -104.68 -0.52 -1.66 16 21 C -0.05 -0.68 9.31 -39.49 -0.37 -1.05 16 22 C -0.14 -1.58 10.03 -39.64 -0.40 -1.97 16 23 C -0.06 -0.72 9.62 -39.17 -0.38 -1.10 16 24 C -0.13 -1.87 5.87 -104.98 -0.62 -2.49 16 25 C 0.51 7.31 7.90 34.61 0.27 7.59 16 26 O -0.50 -8.49 16.14 -19.24 -0.31 -8.80 16 27 O -0.36 -4.19 9.82 -40.54 -0.40 -4.58 16 28 C 0.04 0.31 10.56 101.05 1.07 1.38 16 29 C -0.03 -0.49 9.21 -39.17 -0.36 -0.85 16 30 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.91 6.56 -51.93 -0.34 0.57 16 32 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.05 1.24 3.23 -51.93 -0.17 1.08 16 34 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.34 6.13 4.67 -39.30 -0.18 5.94 16 37 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 38 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 39 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.13 1.75 7.32 -52.49 -0.38 1.37 16 41 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 42 H 0.14 1.26 7.61 -52.48 -0.40 0.86 16 43 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.14 2.26 7.63 -52.49 -0.40 1.86 16 LS Contribution 383.24 15.07 5.78 5.78 Total: -1.00 -32.63 383.24 -6.46 -39.09 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -6.45 Total: 7.49 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -0.44 Total: -1.75 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.21 Total: -39.15 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -1.41 Total: -28.87 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.15 Total: 17.42 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.63 -6.46 -39.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594006876.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.829 kcal (2) G-P(sol) polarization free energy of solvation -32.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds