Wall clock time and date at job start Tue Mar 31 2020 19:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46886 * 2 1 4 4 H 1.08997 * 109.46842 * 57.50091 * 3 2 1 5 5 C 1.50702 * 109.47168 * 177.49991 * 3 2 1 6 6 H 1.07998 * 119.99918 * 119.99853 * 5 3 2 7 7 C 1.37876 * 119.99934 * 300.00400 * 5 3 2 8 8 N 1.31518 * 120.00157 * 179.97438 * 7 5 3 9 9 Si 1.86807 * 120.00106 * 359.97438 * 7 5 3 10 10 H 1.48503 * 109.46959 * 89.99932 * 9 7 5 11 11 H 1.48497 * 109.47221 * 210.00212 * 9 7 5 12 12 H 1.48494 * 109.46823 * 330.00390 * 9 7 5 13 13 N 1.46902 * 109.47120 * 297.49961 * 3 2 1 14 14 C 1.46904 * 110.99716 * 156.37587 * 13 3 2 15 15 H 1.08995 * 109.47143 * 32.27600 * 14 13 3 16 16 C 1.50697 * 109.46926 * 272.27722 * 14 13 3 17 17 O 1.20828 * 120.00396 * 335.08235 * 16 14 13 18 18 O 1.34229 * 119.99891 * 155.08317 * 16 14 13 19 19 C 1.45206 * 116.99894 * 179.97438 * 18 16 14 20 20 C 1.50698 * 109.47021 * 152.27607 * 14 13 3 21 21 C 1.38393 * 119.92265 * 39.99848 * 20 14 13 22 22 C 1.38344 * 120.30004 * 179.97438 * 21 20 14 23 23 C 1.37967 * 120.15215 * 0.02562 * 22 21 20 24 24 C 1.39604 * 119.84774 * 359.97438 * 23 22 21 25 25 C 1.47728 * 120.15261 * 180.02562 * 24 23 22 26 26 O 1.21466 * 120.00467 * 179.97438 * 25 24 23 27 27 O 1.34717 * 119.99566 * 0.02562 * 25 24 23 28 28 C 1.45199 * 116.99752 * 179.97438 * 27 25 24 29 29 C 1.37922 * 119.92500 * 219.72755 * 20 14 13 30 30 H 1.09001 * 109.47367 * 186.22632 * 1 2 3 31 31 H 1.09004 * 109.47213 * 66.22359 * 1 2 3 32 32 H 1.09000 * 109.47691 * 306.22672 * 1 2 3 33 33 H 1.08997 * 109.47001 * 120.00206 * 2 1 3 34 34 H 1.08995 * 109.47146 * 240.00177 * 2 1 3 35 35 H 0.96996 * 119.99815 * 179.97438 * 8 7 5 36 36 H 1.00894 * 110.99993 * 32.42282 * 13 3 2 37 37 H 1.08994 * 109.47714 * 300.00181 * 19 18 16 38 38 H 1.09001 * 109.46942 * 60.00831 * 19 18 16 39 39 H 1.09001 * 109.46741 * 180.02562 * 19 18 16 40 40 H 1.08002 * 119.84864 * 0.02562 * 21 20 14 41 41 H 1.08005 * 119.92280 * 180.02562 * 22 21 20 42 42 H 1.08004 * 120.07839 * 180.02562 * 23 22 21 43 43 H 1.08999 * 109.46895 * 179.97438 * 28 27 25 44 44 H 1.09000 * 109.47306 * 300.00215 * 28 27 25 45 45 H 1.09006 * 109.47155 * 59.99735 * 28 27 25 46 46 H 1.08000 * 120.07749 * 359.97438 * 29 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6404 1.9691 0.8667 5 6 3.5457 1.4431 0.0620 6 1 4.1186 1.8991 -0.7318 7 6 4.1918 0.8613 1.1321 8 7 5.5059 0.8613 1.1859 9 14 3.2007 0.0731 2.5054 10 1 2.9660 -1.3585 2.1877 11 1 3.9516 0.1802 3.7821 12 1 1.8967 0.7709 2.6380 13 7 1.6002 2.1174 -1.2285 14 6 1.5602 3.5742 -1.0434 15 1 2.3412 3.8732 -0.3445 16 6 0.2149 3.9740 -0.4945 17 8 -0.7498 3.2731 -0.6895 18 8 0.0883 5.1087 0.2112 19 6 -1.2371 5.4312 0.7088 20 6 1.7845 4.2553 -2.3689 21 6 1.2024 3.7434 -3.5153 22 6 1.4027 4.3627 -4.7361 23 6 2.1856 5.4957 -4.8182 24 6 2.7758 6.0174 -3.6657 25 6 3.6149 7.2307 -3.7457 26 8 4.1267 7.6826 -2.7412 27 8 3.8115 7.8364 -4.9329 28 6 4.6467 9.0241 -4.9365 29 6 2.5649 5.3905 -2.4357 30 1 -0.3634 -1.0216 0.1115 31 1 -0.3634 0.4143 -0.9405 32 1 -0.3634 0.6073 0.8290 33 1 1.8933 -0.5139 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 5.9603 0.4524 1.9390 36 1 0.7044 1.7668 -1.5328 37 1 -1.9262 5.5295 -0.1299 38 1 -1.5806 4.6355 1.3699 39 1 -1.1996 6.3709 1.2599 40 1 0.5883 2.8569 -3.4566 41 1 0.9451 3.9582 -5.6269 42 1 2.3408 5.9785 -5.7718 43 1 4.7232 9.4114 -5.9525 44 1 4.2033 9.7821 -4.2907 45 1 5.6410 8.7702 -4.5689 46 1 3.0147 5.7917 -1.5395 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594006876.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:36 Heat of formation + Delta-G solvation = -153.639737 kcal Electronic energy + Delta-G solvation = -29671.874985 eV Core-core repulsion = 25526.466181 eV Total energy + Delta-G solvation = -4145.408804 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.02023 -41.52346 -39.95192 -38.55119 -37.50164 -37.39439 -35.03329 -34.02819 -32.36392 -31.72935 -29.56864 -28.95586 -28.58319 -26.79445 -25.11631 -24.32701 -23.44139 -22.31006 -21.83861 -21.23647 -19.24216 -18.77540 -18.70572 -18.23306 -18.09310 -17.39962 -17.38629 -17.08852 -16.84903 -16.15566 -16.11474 -15.60107 -15.20418 -14.92381 -14.63882 -14.56796 -14.55962 -14.36929 -14.10632 -13.79410 -13.68269 -13.55544 -13.37785 -13.06246 -12.97732 -12.80678 -12.68623 -12.52093 -12.30581 -12.14550 -11.93419 -11.86105 -11.82587 -11.77558 -11.61071 -11.33082 -11.27423 -10.71229 -10.05602 -9.88137 -9.49506 -8.28665 -6.31240 -0.34760 0.23449 0.98758 1.26499 1.32244 1.40920 1.43343 1.61119 1.72693 2.28926 2.70122 3.03507 3.19390 3.56482 3.66043 3.82970 3.86912 4.11045 4.17848 4.21516 4.22735 4.26522 4.27597 4.29079 4.34447 4.34889 4.40515 4.48475 4.61473 4.70104 4.71781 4.80364 4.90178 4.96753 5.02512 5.15654 5.19028 5.21073 5.23299 5.33056 5.38566 5.47382 5.64016 5.81152 5.85741 6.23851 6.56227 6.63771 6.67687 6.77592 7.32882 8.88033 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011210 B = 0.003799 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.067842 B = 7368.453638 C = 8314.269846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.194 3.806 4 H -0.011 1.011 5 C -0.501 4.501 6 H 0.042 0.958 7 C 0.017 3.983 8 N -0.944 5.944 9 Si 0.939 3.061 10 H -0.261 1.261 11 H -0.298 1.298 12 H -0.257 1.257 13 N -0.639 5.639 14 C 0.141 3.859 15 H 0.102 0.898 16 C 0.447 3.553 17 O -0.517 6.517 18 O -0.366 6.366 19 C 0.025 3.975 20 C -0.090 4.090 21 C -0.056 4.056 22 C -0.123 4.123 23 C -0.047 4.047 24 C -0.145 4.145 25 C 0.512 3.488 26 O -0.539 6.539 27 O -0.351 6.351 28 C 0.028 3.972 29 C -0.051 4.051 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.038 0.962 33 H 0.043 0.957 34 H 0.072 0.928 35 H 0.265 0.735 36 H 0.349 0.651 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.130 0.870 40 H 0.139 0.861 41 H 0.173 0.827 42 H 0.168 0.832 43 H 0.140 0.860 44 H 0.063 0.937 45 H 0.058 0.942 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.976 12.081 -12.573 21.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.172 4.172 3 C 0.085 3.915 4 H 0.007 0.993 5 C -0.539 4.539 6 H 0.061 0.939 7 C -0.180 4.180 8 N -0.584 5.584 9 Si 0.767 3.233 10 H -0.187 1.187 11 H -0.226 1.226 12 H -0.181 1.181 13 N -0.274 5.274 14 C 0.028 3.972 15 H 0.120 0.880 16 C 0.288 3.712 17 O -0.406 6.406 18 O -0.281 6.281 19 C -0.068 4.068 20 C -0.091 4.091 21 C -0.074 4.074 22 C -0.140 4.140 23 C -0.065 4.065 24 C -0.146 4.146 25 C 0.359 3.641 26 O -0.431 6.431 27 O -0.267 6.267 28 C -0.065 4.065 29 C -0.070 4.070 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.172 0.828 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.148 0.852 40 H 0.157 0.843 41 H 0.190 0.810 42 H 0.186 0.814 43 H 0.158 0.842 44 H 0.082 0.918 45 H 0.077 0.923 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.370 11.997 -12.518 21.299 hybrid contribution -0.382 -0.212 2.033 2.079 sum -12.752 11.786 -10.485 20.284 Atomic orbital electron populations 1.21803 0.94636 1.02211 1.01685 1.21997 0.95988 0.97705 1.01464 1.19519 0.94088 0.91368 0.86557 0.99325 1.21178 0.90598 1.36084 1.06058 0.93932 1.25690 0.95521 0.96630 1.00208 1.70027 1.09178 1.46791 1.32421 0.86001 0.79034 0.79948 0.78348 1.18707 1.22599 1.18116 1.60764 1.33945 0.99322 1.33347 1.20160 0.91142 0.90553 0.95308 0.88042 1.25081 0.92642 0.78652 0.74825 1.90573 1.40649 1.52556 1.56781 1.86577 1.36913 1.40511 1.64104 1.23595 0.80334 1.03014 0.99853 1.19176 1.00439 0.95476 0.93981 1.21504 0.95847 0.98221 0.91856 1.21523 0.98997 0.95301 0.98225 1.21785 0.92314 0.94607 0.97746 1.19034 1.03920 0.96134 0.95516 1.21349 0.78075 0.83308 0.81377 1.90834 1.49000 1.65504 1.37753 1.86514 1.65467 1.42384 1.32295 1.23619 0.93318 0.83513 1.06022 1.21047 0.94969 0.93541 0.97440 0.90916 0.91457 0.94324 0.93903 0.90928 0.92547 0.82776 0.91144 0.92160 0.85186 0.84345 0.80965 0.81422 0.84175 0.91832 0.92313 0.86019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.81 9.57 71.98 0.69 -4.12 16 2 C -0.13 -5.50 5.07 30.59 0.16 -5.35 16 3 C 0.19 8.94 1.47 44.17 0.06 9.01 16 4 H -0.01 -0.52 6.81 -2.39 -0.02 -0.54 16 5 C -0.50 -28.37 9.02 25.60 0.23 -28.14 16 6 H 0.04 2.71 8.06 -2.91 -0.02 2.69 16 7 C 0.02 1.00 5.45 84.65 0.46 1.46 16 8 N -0.94 -59.11 13.96 21.45 0.30 -58.81 16 9 Si 0.94 45.06 24.40 68.60 1.67 46.74 16 10 H -0.26 -11.80 6.85 99.48 0.68 -11.12 16 11 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 12 H -0.26 -11.69 6.53 99.48 0.65 -11.04 16 13 N -0.64 -25.35 5.42 -481.03 -2.61 -27.96 16 14 C 0.14 5.28 2.49 43.42 0.11 5.39 16 15 H 0.10 4.35 7.42 -2.39 -0.02 4.33 16 16 C 0.45 15.51 6.94 71.24 0.49 16.00 16 17 O -0.52 -18.15 15.54 21.96 0.34 -17.81 16 18 O -0.37 -11.58 10.57 -51.40 -0.54 -12.13 16 19 C 0.03 0.56 10.56 113.37 1.20 1.76 16 20 C -0.09 -2.92 4.93 -19.90 -0.10 -3.02 16 21 C -0.06 -1.47 9.31 22.33 0.21 -1.27 16 22 C -0.12 -2.42 10.03 22.23 0.22 -2.20 16 23 C -0.05 -0.96 9.62 22.54 0.22 -0.75 16 24 C -0.14 -4.04 5.87 -20.10 -0.12 -4.16 16 25 C 0.51 14.72 7.90 70.33 0.56 15.28 16 26 O -0.54 -19.05 16.14 19.95 0.32 -18.73 16 27 O -0.35 -7.66 9.82 -56.27 -0.55 -8.21 16 28 C 0.03 0.44 10.56 113.37 1.20 1.63 16 29 C -0.05 -1.67 9.21 22.54 0.21 -1.47 16 30 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.07 2.04 6.56 -2.39 -0.02 2.03 16 32 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.04 1.87 3.23 -2.39 -0.01 1.86 16 34 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 35 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 36 H 0.35 12.37 4.67 -89.70 -0.42 11.95 16 37 H 0.07 1.43 8.13 -2.39 -0.02 1.41 16 38 H 0.06 1.36 8.13 -2.39 -0.02 1.34 16 39 H 0.13 2.03 8.14 -2.39 -0.02 2.02 16 40 H 0.14 3.42 7.32 -2.91 -0.02 3.40 16 41 H 0.17 2.03 8.06 -2.91 -0.02 2.00 16 42 H 0.17 2.39 7.61 -2.91 -0.02 2.36 16 43 H 0.14 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.06 0.99 8.14 -2.38 -0.02 0.98 16 46 H 0.12 4.34 7.63 -2.91 -0.02 4.32 16 Total: -1.00 -74.62 383.24 5.23 -69.39 By element: Atomic # 1 Polarization: 26.95 SS G_CDS: 0.50 Total: 27.45 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: 5.79 Total: 0.07 kcal Atomic # 7 Polarization: -84.46 SS G_CDS: -2.31 Total: -86.77 kcal Atomic # 8 Polarization: -56.44 SS G_CDS: -0.43 Total: -56.87 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.67 Total: 46.74 kcal Total: -74.62 5.23 -69.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594006876.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.251 kcal (2) G-P(sol) polarization free energy of solvation -74.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds