Wall clock time and date at job start Tue Mar 31 2020 19:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47163 * 2 1 4 4 H 1.09000 * 109.46690 * 183.47154 * 3 2 1 5 5 C 1.50694 * 109.46864 * 303.46738 * 3 2 1 6 6 H 1.07999 * 119.99839 * 115.72669 * 5 3 2 7 7 C 1.37878 * 120.00356 * 295.72487 * 5 3 2 8 8 N 1.31514 * 119.99852 * 352.75228 * 7 5 3 9 9 Si 1.86797 * 119.99977 * 172.75660 * 7 5 3 10 10 H 1.48502 * 109.47000 * 269.99573 * 9 7 5 11 11 H 1.48494 * 109.47625 * 29.99845 * 9 7 5 12 12 H 1.48505 * 109.47131 * 150.00272 * 9 7 5 13 13 N 1.46895 * 109.46886 * 63.47185 * 3 2 1 14 14 C 1.46901 * 111.00298 * 83.95396 * 13 3 2 15 15 H 1.09000 * 109.46698 * 325.99767 * 14 13 3 16 16 C 1.50695 * 109.47274 * 85.99946 * 14 13 3 17 17 O 1.20831 * 120.00275 * 0.02562 * 16 14 13 18 18 O 1.34226 * 120.00160 * 179.97438 * 16 14 13 19 19 C 1.45200 * 117.00231 * 180.02562 * 18 16 14 20 20 C 1.50708 * 109.46924 * 206.00028 * 14 13 3 21 21 C 1.38383 * 119.92207 * 319.72015 * 20 14 13 22 22 C 1.38349 * 120.29922 * 179.76655 * 21 20 14 23 23 C 1.37966 * 120.14977 * 0.51143 * 22 21 20 24 24 C 1.39605 * 119.84610 * 359.74770 * 23 22 21 25 25 C 1.47732 * 120.14960 * 180.02562 * 24 23 22 26 26 O 1.21470 * 119.99948 * 179.97438 * 25 24 23 27 27 O 1.34706 * 119.99904 * 359.97438 * 25 24 23 28 28 C 1.45194 * 116.99893 * 180.02562 * 27 25 24 29 29 C 1.37914 * 119.92296 * 140.00034 * 20 14 13 30 30 H 1.09006 * 109.46609 * 185.38713 * 1 2 3 31 31 H 1.08992 * 109.46952 * 305.38483 * 1 2 3 32 32 H 1.09000 * 109.46714 * 65.38970 * 1 2 3 33 33 H 1.09003 * 109.47552 * 240.00069 * 2 1 3 34 34 H 1.09001 * 109.47316 * 119.99853 * 2 1 3 35 35 H 0.96997 * 120.00279 * 355.66383 * 8 7 5 36 36 H 1.00903 * 110.99677 * 207.90459 * 13 3 2 37 37 H 1.08994 * 109.47213 * 180.02562 * 19 18 16 38 38 H 1.09005 * 109.47338 * 300.00319 * 19 18 16 39 39 H 1.09000 * 109.47366 * 60.00125 * 19 18 16 40 40 H 1.08003 * 119.85478 * 0.02613 * 21 20 14 41 41 H 1.08003 * 119.92620 * 180.26065 * 22 21 20 42 42 H 1.07999 * 120.07610 * 179.72615 * 23 22 21 43 43 H 1.08997 * 109.47482 * 299.99654 * 28 27 25 44 44 H 1.09001 * 109.47444 * 60.00323 * 28 27 25 45 45 H 1.09007 * 109.47159 * 179.97438 * 28 27 25 46 46 H 1.08011 * 120.07734 * 359.97438 * 29 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1283 1.4431 -0.0622 5 6 1.4688 2.1772 -1.1852 6 1 0.7993 3.0108 -1.0324 7 6 1.8007 1.7853 -2.4648 8 7 2.7229 0.8667 -2.6527 9 14 0.9407 2.5593 -3.9313 10 1 -0.2695 1.7680 -4.2697 11 1 0.5446 3.9504 -3.5955 12 1 1.8634 2.5744 -5.0949 13 7 1.6200 2.1103 1.2391 14 6 2.5542 1.8217 2.3355 15 1 2.9433 0.8096 2.2243 16 6 3.6949 2.8056 2.2956 17 8 3.7263 3.6600 1.4418 18 8 4.6757 2.7336 3.2092 19 6 5.7421 3.7140 3.1103 20 6 1.8338 1.9409 3.6538 21 6 0.9219 2.9627 3.8522 22 6 0.2526 3.0767 5.0576 23 6 0.4983 2.1771 6.0744 24 6 1.4210 1.1471 5.8829 25 6 1.6889 0.1798 6.9669 26 8 2.4919 -0.7156 6.7971 27 8 1.0427 0.2909 8.1436 28 6 1.3561 -0.6941 9.1633 29 6 2.0891 1.0349 4.6617 30 1 -0.3633 -1.0232 0.0965 31 1 -0.3633 0.5950 0.8378 32 1 -0.3633 0.4280 -0.9343 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.2137 0.5102 -1.8959 36 1 1.5232 3.1049 1.0990 37 1 6.4673 3.5436 3.9059 38 1 6.2353 3.6181 2.1430 39 1 5.3245 4.7161 3.2074 40 1 0.7287 3.6721 3.0610 41 1 -0.4610 3.8740 5.2045 42 1 -0.0216 2.2698 7.0165 43 1 1.1179 -1.6905 8.7914 44 1 2.4174 -0.6408 9.4059 45 1 0.7685 -0.4899 10.0585 46 1 2.8041 0.2402 4.5070 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594006878.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:45 Heat of formation + Delta-G solvation = -143.702912 kcal Electronic energy + Delta-G solvation = -29600.913851 eV Core-core repulsion = 25455.935940 eV Total energy + Delta-G solvation = -4144.977911 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.81845 -40.39476 -38.91049 -37.01488 -36.55256 -35.85048 -33.72881 -31.49510 -31.35385 -30.25378 -28.25220 -27.91251 -26.47480 -24.72492 -24.07159 -23.49341 -22.32386 -21.26390 -20.37241 -19.23888 -18.08999 -17.68695 -17.30380 -16.86488 -16.53176 -16.37939 -16.12865 -16.05750 -15.10019 -14.73068 -14.10930 -14.02048 -13.80349 -13.70680 -13.67395 -13.59016 -13.12171 -13.06105 -12.58203 -12.52198 -12.38105 -12.06309 -11.93459 -11.79215 -11.49210 -11.18673 -11.09615 -11.02769 -10.78572 -10.66609 -10.64727 -10.52851 -10.26307 -10.11527 -9.98831 -9.76014 -9.09494 -8.88358 -8.54177 -8.38594 -7.80372 -6.35880 -4.06518 0.62777 1.23321 2.37386 2.44348 2.50697 2.93156 3.44348 3.47072 3.62626 3.70594 4.48397 4.52702 4.58379 4.76699 4.84576 4.90426 4.93146 5.01466 5.10682 5.17806 5.22034 5.24159 5.26364 5.36392 5.41675 5.46270 5.58101 5.74347 5.82532 6.08204 6.15998 6.21977 6.30899 6.38733 6.47098 6.51730 6.57114 6.74091 6.85274 6.96128 7.18998 7.38468 7.50199 7.57467 7.69000 7.87845 7.96469 8.34156 8.49330 8.83364 9.62019 11.00908 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014221 B = 0.003277 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.481626 B = 8542.112435 C = 9322.847421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.109 4.109 3 C 0.204 3.796 4 H -0.003 1.003 5 C -0.587 4.587 6 H 0.055 0.945 7 C 0.025 3.975 8 N -0.909 5.909 9 Si 1.068 2.932 10 H -0.287 1.287 11 H -0.289 1.289 12 H -0.287 1.287 13 N -0.641 5.641 14 C 0.135 3.865 15 H 0.119 0.881 16 C 0.432 3.568 17 O -0.488 6.488 18 O -0.361 6.361 19 C 0.034 3.966 20 C -0.071 4.071 21 C -0.052 4.052 22 C -0.135 4.135 23 C -0.063 4.063 24 C -0.133 4.133 25 C 0.511 3.489 26 O -0.505 6.505 27 O -0.357 6.357 28 C 0.037 3.963 29 C -0.034 4.034 30 H 0.018 0.982 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.020 0.980 35 H 0.270 0.730 36 H 0.349 0.651 37 H 0.096 0.904 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.133 0.867 41 H 0.132 0.868 42 H 0.136 0.864 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.101 0.899 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.739 2.268 21.352 21.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.148 4.148 3 C 0.096 3.904 4 H 0.014 0.986 5 C -0.626 4.626 6 H 0.073 0.927 7 C -0.180 4.180 8 N -0.546 5.546 9 Si 0.896 3.104 10 H -0.214 1.214 11 H -0.215 1.215 12 H -0.212 1.212 13 N -0.273 5.273 14 C 0.021 3.979 15 H 0.137 0.863 16 C 0.272 3.728 17 O -0.374 6.374 18 O -0.277 6.277 19 C -0.061 4.061 20 C -0.072 4.072 21 C -0.070 4.070 22 C -0.153 4.153 23 C -0.081 4.081 24 C -0.134 4.134 25 C 0.356 3.644 26 O -0.394 6.394 27 O -0.273 6.273 28 C -0.057 4.057 29 C -0.053 4.053 30 H 0.037 0.963 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.039 0.961 35 H 0.081 0.919 36 H 0.171 0.829 37 H 0.115 0.885 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.151 0.849 41 H 0.150 0.850 42 H 0.153 0.847 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.120 0.880 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.012 1.724 19.565 19.743 hybrid contribution 1.175 0.539 1.416 1.917 sum -0.837 2.263 20.981 21.119 Atomic orbital electron populations 1.21418 0.96225 0.97719 1.02258 1.21554 0.96672 0.97910 0.98666 1.19346 0.93412 0.91626 0.85983 0.98592 1.21841 1.31434 1.17860 0.91440 0.92656 1.25671 0.96247 0.95789 1.00253 1.70761 1.21347 1.27237 1.35224 0.83562 0.75816 0.75503 0.75488 1.21370 1.21511 1.21247 1.61115 1.42216 1.17164 1.06814 1.20458 0.87043 0.98068 0.92305 0.86347 1.25354 0.83436 0.85466 0.78575 1.90726 1.76329 1.35148 1.35157 1.86568 1.33302 1.54701 1.53100 1.23205 0.88389 0.91445 1.03012 1.19374 0.98195 0.95979 0.93692 1.21343 0.92737 0.96278 0.96688 1.21121 1.00914 1.00031 0.93186 1.21410 0.94900 0.92476 0.99316 1.18920 1.03384 0.98006 0.93109 1.21247 0.77769 0.83489 0.81846 1.90842 1.33388 1.33787 1.81381 1.86534 1.63361 1.53768 1.23661 1.23271 1.02114 0.91304 0.89010 1.21069 0.96381 0.97539 0.90300 0.96327 0.93002 0.92328 0.91890 0.96119 0.91911 0.82911 0.88508 0.92015 0.92200 0.84945 0.84992 0.84651 0.91776 0.91843 0.88034 0.84349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.54 9.44 37.16 0.35 -2.19 16 2 C -0.11 -2.49 5.47 -26.73 -0.15 -2.64 16 3 C 0.20 4.88 1.62 -68.87 -0.11 4.76 16 4 H 0.00 -0.09 7.06 -51.93 -0.37 -0.46 16 5 C -0.59 -15.71 7.19 -34.44 -0.25 -15.96 16 6 H 0.06 1.49 7.69 -52.49 -0.40 1.09 16 7 C 0.03 0.70 5.25 -17.82 -0.09 0.60 16 8 N -0.91 -26.71 12.90 55.43 0.71 -26.00 16 9 Si 1.07 25.00 29.91 -169.99 -5.08 19.92 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 13 N -0.64 -12.77 4.64 -103.40 -0.48 -13.25 16 14 C 0.13 2.33 2.50 -70.01 -0.17 2.15 16 15 H 0.12 2.06 6.88 -51.93 -0.36 1.70 16 16 C 0.43 7.81 6.97 36.00 0.25 8.06 16 17 O -0.49 -10.32 15.41 -18.75 -0.29 -10.61 16 18 O -0.36 -5.68 10.48 -39.25 -0.41 -6.09 16 19 C 0.03 0.42 10.56 101.05 1.07 1.49 16 20 C -0.07 -1.05 4.87 -104.68 -0.51 -1.56 16 21 C -0.05 -0.69 9.31 -39.49 -0.37 -1.05 16 22 C -0.13 -1.44 10.03 -39.64 -0.40 -1.84 16 23 C -0.06 -0.67 9.62 -39.17 -0.38 -1.05 16 24 C -0.13 -1.70 5.87 -104.98 -0.62 -2.31 16 25 C 0.51 6.65 7.90 34.61 0.27 6.93 16 26 O -0.51 -7.79 16.14 -19.24 -0.31 -8.10 16 27 O -0.36 -3.79 9.82 -40.51 -0.40 -4.19 16 28 C 0.04 0.28 10.56 101.05 1.07 1.34 16 29 C -0.03 -0.48 9.21 -39.17 -0.36 -0.84 16 30 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 1.06 7.56 -51.93 -0.39 0.67 16 32 H 0.06 1.36 7.33 -51.93 -0.38 0.98 16 33 H 0.06 1.59 6.31 -51.93 -0.33 1.26 16 34 H 0.02 0.42 7.32 -51.93 -0.38 0.04 16 35 H 0.27 7.92 6.06 -40.82 -0.25 7.67 16 36 H 0.35 7.22 6.64 -39.29 -0.26 6.96 16 37 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.81 8.13 -51.93 -0.42 0.38 16 39 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 40 H 0.13 1.74 7.27 -52.48 -0.38 1.36 16 41 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 42 H 0.14 1.14 7.61 -52.49 -0.40 0.75 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.10 0.45 8.14 -51.92 -0.42 0.02 16 46 H 0.14 1.94 7.63 -52.48 -0.40 1.54 16 LS Contribution 387.36 15.07 5.84 5.84 Total: -1.00 -32.47 387.36 -7.29 -39.76 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -6.47 Total: 6.83 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -0.39 Total: -4.10 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.24 Total: -39.25 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -1.41 Total: -28.99 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -5.08 Total: 19.92 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.47 -7.29 -39.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594006878.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.944 kcal (2) G-P(sol) polarization free energy of solvation -32.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds