Wall clock time and date at job start Tue Mar 31 2020 19:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47163 * 2 1 4 4 H 1.09000 * 109.46690 * 183.47154 * 3 2 1 5 5 C 1.50694 * 109.46864 * 303.46738 * 3 2 1 6 6 H 1.07999 * 119.99839 * 115.72669 * 5 3 2 7 7 C 1.37878 * 120.00356 * 295.72487 * 5 3 2 8 8 N 1.31514 * 119.99852 * 352.75228 * 7 5 3 9 9 Si 1.86797 * 119.99977 * 172.75660 * 7 5 3 10 10 H 1.48502 * 109.47000 * 269.99573 * 9 7 5 11 11 H 1.48494 * 109.47625 * 29.99845 * 9 7 5 12 12 H 1.48505 * 109.47131 * 150.00272 * 9 7 5 13 13 N 1.46895 * 109.46886 * 63.47185 * 3 2 1 14 14 C 1.46901 * 111.00298 * 83.95396 * 13 3 2 15 15 H 1.09000 * 109.46698 * 325.99767 * 14 13 3 16 16 C 1.50695 * 109.47274 * 85.99946 * 14 13 3 17 17 O 1.20831 * 120.00275 * 0.02562 * 16 14 13 18 18 O 1.34226 * 120.00160 * 179.97438 * 16 14 13 19 19 C 1.45200 * 117.00231 * 180.02562 * 18 16 14 20 20 C 1.50708 * 109.46924 * 206.00028 * 14 13 3 21 21 C 1.38383 * 119.92207 * 319.72015 * 20 14 13 22 22 C 1.38349 * 120.29922 * 179.76655 * 21 20 14 23 23 C 1.37966 * 120.14977 * 0.51143 * 22 21 20 24 24 C 1.39605 * 119.84610 * 359.74770 * 23 22 21 25 25 C 1.47732 * 120.14960 * 180.02562 * 24 23 22 26 26 O 1.21470 * 119.99948 * 179.97438 * 25 24 23 27 27 O 1.34706 * 119.99904 * 359.97438 * 25 24 23 28 28 C 1.45194 * 116.99893 * 180.02562 * 27 25 24 29 29 C 1.37914 * 119.92296 * 140.00034 * 20 14 13 30 30 H 1.09006 * 109.46609 * 185.38713 * 1 2 3 31 31 H 1.08992 * 109.46952 * 305.38483 * 1 2 3 32 32 H 1.09000 * 109.46714 * 65.38970 * 1 2 3 33 33 H 1.09003 * 109.47552 * 240.00069 * 2 1 3 34 34 H 1.09001 * 109.47316 * 119.99853 * 2 1 3 35 35 H 0.96997 * 120.00279 * 355.66383 * 8 7 5 36 36 H 1.00903 * 110.99677 * 207.90459 * 13 3 2 37 37 H 1.08994 * 109.47213 * 180.02562 * 19 18 16 38 38 H 1.09005 * 109.47338 * 300.00319 * 19 18 16 39 39 H 1.09000 * 109.47366 * 60.00125 * 19 18 16 40 40 H 1.08003 * 119.85478 * 0.02613 * 21 20 14 41 41 H 1.08003 * 119.92620 * 180.26065 * 22 21 20 42 42 H 1.07999 * 120.07610 * 179.72615 * 23 22 21 43 43 H 1.08997 * 109.47482 * 299.99654 * 28 27 25 44 44 H 1.09001 * 109.47444 * 60.00323 * 28 27 25 45 45 H 1.09007 * 109.47159 * 179.97438 * 28 27 25 46 46 H 1.08011 * 120.07734 * 359.97438 * 29 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1283 1.4431 -0.0622 5 6 1.4688 2.1772 -1.1852 6 1 0.7993 3.0108 -1.0324 7 6 1.8007 1.7853 -2.4648 8 7 2.7229 0.8667 -2.6527 9 14 0.9407 2.5593 -3.9313 10 1 -0.2695 1.7680 -4.2697 11 1 0.5446 3.9504 -3.5955 12 1 1.8634 2.5744 -5.0949 13 7 1.6200 2.1103 1.2391 14 6 2.5542 1.8217 2.3355 15 1 2.9433 0.8096 2.2243 16 6 3.6949 2.8056 2.2956 17 8 3.7263 3.6600 1.4418 18 8 4.6757 2.7336 3.2092 19 6 5.7421 3.7140 3.1103 20 6 1.8338 1.9409 3.6538 21 6 0.9219 2.9627 3.8522 22 6 0.2526 3.0767 5.0576 23 6 0.4983 2.1771 6.0744 24 6 1.4210 1.1471 5.8829 25 6 1.6889 0.1798 6.9669 26 8 2.4919 -0.7156 6.7971 27 8 1.0427 0.2909 8.1436 28 6 1.3561 -0.6941 9.1633 29 6 2.0891 1.0349 4.6617 30 1 -0.3633 -1.0232 0.0965 31 1 -0.3633 0.5950 0.8378 32 1 -0.3633 0.4280 -0.9343 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.2137 0.5102 -1.8959 36 1 1.5232 3.1049 1.0990 37 1 6.4673 3.5436 3.9059 38 1 6.2353 3.6181 2.1430 39 1 5.3245 4.7161 3.2074 40 1 0.7287 3.6721 3.0610 41 1 -0.4610 3.8740 5.2045 42 1 -0.0216 2.2698 7.0165 43 1 1.1179 -1.6905 8.7914 44 1 2.4174 -0.6408 9.4059 45 1 0.7685 -0.4899 10.0585 46 1 2.8041 0.2402 4.5070 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594006878.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:44 Heat of formation + Delta-G solvation = -162.470151 kcal Electronic energy + Delta-G solvation = -29601.727660 eV Core-core repulsion = 25455.935940 eV Total energy + Delta-G solvation = -4145.791720 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.04059 -41.52866 -39.97110 -38.55321 -37.50117 -37.43169 -35.31244 -33.24399 -32.36467 -31.74267 -29.46114 -28.66606 -27.99643 -26.30902 -25.56222 -24.94444 -23.41402 -22.39711 -21.74093 -20.91581 -19.37198 -19.20809 -18.41636 -18.13027 -17.95884 -17.41656 -17.38999 -17.03021 -16.40990 -16.01950 -15.72392 -15.61632 -15.21935 -15.07741 -14.59529 -14.55676 -14.54244 -14.38187 -14.12721 -13.74281 -13.54031 -13.37215 -13.12750 -13.07514 -12.98464 -12.68041 -12.62556 -12.24049 -12.20989 -11.96029 -11.92744 -11.89134 -11.81952 -11.77598 -11.63862 -11.59520 -10.60266 -10.46363 -10.07095 -9.90153 -9.53784 -8.56689 -6.26828 -0.35821 0.23580 0.97410 1.42703 1.53752 1.60987 1.62042 1.70014 1.78227 2.57067 2.70318 3.20143 3.25087 3.48257 3.64469 3.77462 3.85278 4.03765 4.11507 4.20221 4.20720 4.27489 4.34694 4.35470 4.37570 4.45347 4.53796 4.56906 4.68892 4.73452 4.77617 4.88378 4.98104 5.16391 5.18205 5.19935 5.21768 5.34862 5.38913 5.43900 5.50407 5.70485 5.78285 5.81407 5.98590 6.34649 6.44069 6.55131 6.63886 6.69402 7.49529 8.80204 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014221 B = 0.003277 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.481626 B = 8542.112435 C = 9322.847421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.104 4.104 3 C 0.212 3.788 4 H -0.042 1.042 5 C -0.589 4.589 6 H 0.051 0.949 7 C -0.024 4.024 8 N -0.935 5.935 9 Si 1.110 2.890 10 H -0.272 1.272 11 H -0.273 1.273 12 H -0.290 1.290 13 N -0.630 5.630 14 C 0.137 3.863 15 H 0.112 0.888 16 C 0.437 3.563 17 O -0.526 6.526 18 O -0.359 6.359 19 C 0.026 3.974 20 C -0.084 4.084 21 C -0.061 4.061 22 C -0.122 4.122 23 C -0.046 4.046 24 C -0.142 4.142 25 C 0.514 3.486 26 O -0.538 6.538 27 O -0.352 6.352 28 C 0.028 3.972 29 C -0.043 4.043 30 H 0.041 0.959 31 H 0.060 0.940 32 H 0.036 0.964 33 H 0.034 0.966 34 H 0.037 0.963 35 H 0.257 0.743 36 H 0.345 0.655 37 H 0.136 0.864 38 H 0.051 0.949 39 H 0.065 0.935 40 H 0.129 0.871 41 H 0.168 0.832 42 H 0.167 0.833 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.138 0.862 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.618 3.187 23.981 24.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.143 4.143 3 C 0.103 3.897 4 H -0.025 1.025 5 C -0.628 4.628 6 H 0.069 0.931 7 C -0.223 4.223 8 N -0.573 5.573 9 Si 0.933 3.067 10 H -0.197 1.197 11 H -0.198 1.198 12 H -0.217 1.217 13 N -0.261 5.261 14 C 0.024 3.976 15 H 0.130 0.870 16 C 0.279 3.721 17 O -0.415 6.415 18 O -0.275 6.275 19 C -0.067 4.067 20 C -0.085 4.085 21 C -0.080 4.080 22 C -0.139 4.139 23 C -0.064 4.064 24 C -0.143 4.143 25 C 0.360 3.640 26 O -0.429 6.429 27 O -0.268 6.268 28 C -0.064 4.064 29 C -0.062 4.062 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.165 0.835 37 H 0.154 0.846 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.147 0.853 41 H 0.185 0.815 42 H 0.184 0.816 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.156 0.844 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.899 2.641 22.256 22.749 hybrid contribution 1.821 0.275 0.808 2.011 sum -2.079 2.915 23.065 23.341 Atomic orbital electron populations 1.21300 0.94651 0.99171 1.01401 1.21435 0.97914 0.96824 0.98083 1.19104 0.90881 0.92555 0.87129 1.02489 1.22127 1.30590 1.17544 0.92506 0.93076 1.26965 0.96261 0.95709 1.03325 1.70872 1.22822 1.28964 1.34645 0.83018 0.75339 0.75773 0.72582 1.19746 1.19828 1.21651 1.61022 1.42986 1.16438 1.05661 1.20409 0.86982 0.97366 0.92880 0.87033 1.25388 0.83823 0.84826 0.78100 1.90703 1.77244 1.36879 1.36669 1.86546 1.33410 1.55512 1.51988 1.23551 0.87979 0.91075 1.04107 1.19089 0.99456 0.97604 0.92378 1.21452 0.92840 0.95767 0.97924 1.21461 1.00335 1.00441 0.91675 1.21759 0.93401 0.90848 1.00362 1.19015 1.03887 0.98810 0.92568 1.21308 0.77268 0.82889 0.82500 1.90829 1.34922 1.35131 1.82059 1.86517 1.62614 1.54457 1.23194 1.23610 1.02964 0.90670 0.89196 1.20978 0.96874 0.97352 0.91003 0.94043 0.92053 0.94482 0.94714 0.94390 0.93313 0.83469 0.84557 0.92975 0.91652 0.85328 0.81472 0.81558 0.92058 0.91919 0.84398 0.85357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.56 9.44 71.98 0.68 -3.88 16 2 C -0.10 -4.85 5.47 30.60 0.17 -4.68 16 3 C 0.21 10.51 1.62 44.17 0.07 10.58 16 4 H -0.04 -2.40 7.06 -2.39 -0.02 -2.42 16 5 C -0.59 -32.29 7.19 25.60 0.18 -32.11 16 6 H 0.05 2.79 7.69 -2.91 -0.02 2.77 16 7 C -0.02 -1.35 5.25 84.65 0.44 -0.91 16 8 N -0.94 -56.84 12.90 21.45 0.28 -56.57 16 9 Si 1.11 50.70 29.91 68.60 2.05 52.76 16 10 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 11 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 12 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 13 N -0.63 -25.71 4.64 -481.04 -2.23 -27.94 16 14 C 0.14 4.85 2.50 43.42 0.11 4.96 16 15 H 0.11 4.07 6.88 -2.39 -0.02 4.06 16 16 C 0.44 16.29 6.97 71.23 0.50 16.78 16 17 O -0.53 -23.12 15.41 21.95 0.34 -22.78 16 18 O -0.36 -11.39 10.48 -51.38 -0.54 -11.93 16 19 C 0.03 0.64 10.56 113.37 1.20 1.84 16 20 C -0.08 -2.45 4.87 -19.90 -0.10 -2.55 16 21 C -0.06 -1.52 9.31 22.33 0.21 -1.31 16 22 C -0.12 -2.17 10.03 22.23 0.22 -1.95 16 23 C -0.05 -0.81 9.62 22.54 0.22 -0.60 16 24 C -0.14 -3.35 5.87 -20.10 -0.12 -3.47 16 25 C 0.51 12.59 7.90 70.33 0.56 13.14 16 26 O -0.54 -16.38 16.14 19.93 0.32 -16.05 16 27 O -0.35 -6.54 9.82 -56.16 -0.55 -7.09 16 28 C 0.03 0.36 10.56 113.37 1.20 1.55 16 29 C -0.04 -1.19 9.21 22.53 0.21 -0.99 16 30 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 31 H 0.06 2.45 7.56 -2.39 -0.02 2.43 16 32 H 0.04 1.70 7.33 -2.39 -0.02 1.68 16 33 H 0.03 1.81 6.31 -2.39 -0.02 1.79 16 34 H 0.04 1.60 7.32 -2.39 -0.02 1.58 16 35 H 0.26 15.87 6.06 -92.71 -0.56 15.31 16 36 H 0.34 14.63 6.64 -89.69 -0.60 14.03 16 37 H 0.14 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.05 1.38 8.13 -2.38 -0.02 1.36 16 39 H 0.06 1.53 8.13 -2.39 -0.02 1.51 16 40 H 0.13 3.26 7.27 -2.91 -0.02 3.24 16 41 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 42 H 0.17 1.96 7.61 -2.91 -0.02 1.94 16 43 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.14 0.70 8.14 -2.38 -0.02 0.68 16 46 H 0.13 3.70 7.63 -2.91 -0.02 3.68 16 Total: -1.00 -73.04 387.36 6.02 -67.02 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: 0.61 Total: 26.16 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: 5.74 Total: -3.58 kcal Atomic # 7 Polarization: -82.55 SS G_CDS: -1.95 Total: -84.50 kcal Atomic # 8 Polarization: -57.42 SS G_CDS: -0.43 Total: -57.85 kcal Atomic # 14 Polarization: 50.70 SS G_CDS: 2.05 Total: 52.76 kcal Total: -73.04 6.02 -67.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594006878.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.449 kcal (2) G-P(sol) polarization free energy of solvation -73.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds