Wall clock time and date at job start Tue Mar 31 2020 19:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47255 * 2 1 4 4 H 1.09003 * 109.47086 * 303.09186 * 3 2 1 5 5 C 1.50706 * 109.47327 * 183.09516 * 3 2 1 6 6 H 1.08000 * 119.99717 * 239.99715 * 5 3 2 7 7 C 1.37871 * 119.99951 * 59.99637 * 5 3 2 8 8 N 1.31513 * 120.00261 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 120.00014 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.46856 * 89.99996 * 9 7 5 11 11 H 1.48499 * 109.46979 * 209.99966 * 9 7 5 12 12 H 1.48500 * 109.46906 * 329.99766 * 9 7 5 13 13 N 1.46902 * 109.47488 * 63.09311 * 3 2 1 14 14 C 1.46902 * 111.00109 * 205.04722 * 13 3 2 15 15 H 1.09006 * 109.46856 * 325.62388 * 14 13 3 16 16 C 1.50694 * 109.47158 * 85.62927 * 14 13 3 17 17 O 1.20816 * 120.00476 * 26.00533 * 16 14 13 18 18 O 1.34229 * 119.99720 * 206.00542 * 16 14 13 19 19 C 1.45198 * 117.00209 * 180.02562 * 18 16 14 20 20 C 1.50698 * 109.46829 * 205.63078 * 14 13 3 21 21 C 1.38387 * 119.92593 * 319.72418 * 20 14 13 22 22 C 1.38346 * 120.30547 * 179.72586 * 21 20 14 23 23 C 1.37963 * 120.15134 * 0.55092 * 22 21 20 24 24 C 1.39618 * 119.84227 * 359.72278 * 23 22 21 25 25 C 1.47730 * 120.14539 * 180.02562 * 24 23 22 26 26 O 1.21475 * 119.99652 * 179.97438 * 25 24 23 27 27 O 1.34708 * 120.00061 * 359.97438 * 25 24 23 28 28 C 1.45203 * 116.99461 * 179.97438 * 27 25 24 29 29 C 1.37927 * 119.92767 * 139.99631 * 20 14 13 30 30 H 1.08997 * 109.47191 * 294.65305 * 1 2 3 31 31 H 1.09004 * 109.47083 * 54.65559 * 1 2 3 32 32 H 1.08995 * 109.47123 * 174.65589 * 1 2 3 33 33 H 1.09000 * 109.47391 * 119.99775 * 2 1 3 34 34 H 1.09003 * 109.47303 * 239.99672 * 2 1 3 35 35 H 0.96998 * 120.00716 * 179.97438 * 8 7 5 36 36 H 1.00904 * 110.99988 * 81.09027 * 13 3 2 37 37 H 1.08996 * 109.47325 * 180.02562 * 19 18 16 38 38 H 1.09011 * 109.46787 * 299.99984 * 19 18 16 39 39 H 1.08995 * 109.47637 * 59.99451 * 19 18 16 40 40 H 1.08006 * 119.84603 * 359.97438 * 21 20 14 41 41 H 1.07998 * 119.92882 * 180.25122 * 22 21 20 42 42 H 1.07999 * 120.08358 * 179.70533 * 23 22 21 43 43 H 1.08999 * 109.47543 * 60.00311 * 28 27 25 44 44 H 1.09007 * 109.46455 * 180.02562 * 28 27 25 45 45 H 1.09003 * 109.47355 * 299.99755 * 28 27 25 46 46 H 1.07999 * 120.07302 * 0.02562 * 29 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6321 1.9720 -0.8610 5 6 3.5451 1.4431 -0.0767 6 1 4.1258 1.8964 0.7130 7 6 4.1806 0.8651 -1.1550 8 7 3.4735 0.3135 -2.1170 9 14 6.0463 0.8653 -1.2498 10 1 6.5751 -0.3596 -0.5979 11 1 6.4696 0.8908 -2.6730 12 1 6.5770 2.0650 -0.5539 13 7 1.6123 2.1131 1.2350 14 6 1.5381 3.5680 1.0455 15 1 2.3220 3.8852 0.3576 16 6 0.1916 3.9322 0.4754 17 8 -0.7621 3.2177 0.6743 18 8 0.0518 5.0507 -0.2536 19 6 -1.2740 5.3391 -0.7707 20 6 1.7251 4.2575 2.3724 21 6 1.1342 3.7368 3.5103 22 6 1.3053 4.3602 4.7334 23 6 2.0579 5.5130 4.8244 24 6 2.6521 6.0469 3.6794 25 6 3.4598 7.2806 3.7692 26 8 3.9760 7.7425 2.7713 27 8 3.6238 7.8932 4.9577 28 6 4.4304 9.1006 4.9710 29 6 2.4800 5.4092 2.4490 30 1 -0.3633 0.4286 0.9340 31 1 -0.3633 0.5945 -0.8383 32 1 -0.3633 -1.0231 -0.0957 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 3.9205 -0.0928 -2.8758 36 1 2.2229 1.8792 2.0036 37 1 -1.2476 6.2680 -1.3403 38 1 -1.5960 4.5244 -1.4195 39 1 -1.9734 5.4409 0.0590 40 1 0.5400 2.8373 3.4439 41 1 0.8448 3.9464 5.6183 42 1 2.1868 6.0014 5.7790 43 1 3.9789 9.8465 4.3169 44 1 4.4821 9.4916 5.9872 45 1 5.4359 8.8697 4.6193 46 1 2.9366 5.8172 1.5594 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594006879.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:49 Heat of formation + Delta-G solvation = -142.242511 kcal Electronic energy + Delta-G solvation = -29598.202922 eV Core-core repulsion = 25453.288339 eV Total energy + Delta-G solvation = -4144.914583 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.72409 -40.13477 -38.86591 -36.66248 -36.45056 -35.61506 -33.46306 -31.67665 -31.35902 -30.20146 -28.15386 -27.86961 -26.67461 -25.10483 -24.06860 -22.71745 -22.26239 -21.12300 -20.00031 -19.52248 -18.01387 -17.34839 -16.98899 -16.60037 -16.48530 -16.15848 -16.00675 -15.78281 -15.16599 -14.74783 -14.55971 -13.92714 -13.72398 -13.68820 -13.55849 -13.29647 -12.90525 -12.80067 -12.52036 -12.45988 -12.29605 -11.99442 -11.77042 -11.62793 -11.35977 -11.20106 -10.99573 -10.98448 -10.95862 -10.70413 -10.61635 -10.42501 -10.32410 -9.99033 -9.64671 -9.58002 -9.17048 -9.06396 -8.79587 -8.43866 -7.53098 -6.06068 -4.20011 0.65592 1.24038 2.45200 2.51299 2.73403 3.08416 3.25340 3.32925 3.35725 3.74626 4.35539 4.56810 4.67039 4.82302 4.88760 4.97203 5.08776 5.13237 5.21552 5.25309 5.28220 5.31319 5.36817 5.39620 5.48491 5.70301 5.71810 5.86681 5.97806 6.12669 6.20367 6.34632 6.43444 6.52502 6.57061 6.73305 6.77000 6.80865 7.03461 7.25841 7.33304 7.51750 7.62008 7.72320 7.88472 8.01477 8.15666 8.32113 8.45939 8.89720 9.48693 10.94763 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.009446 B = 0.004040 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2963.643365 B = 6929.803390 C = 8371.756763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.103 4.103 3 C 0.217 3.783 4 H 0.031 0.969 5 C -0.553 4.553 6 H 0.057 0.943 7 C 0.071 3.929 8 N -0.881 5.881 9 Si 0.889 3.111 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.663 5.663 14 C 0.145 3.855 15 H 0.093 0.907 16 C 0.470 3.530 17 O -0.481 6.481 18 O -0.365 6.365 19 C 0.038 3.962 20 C -0.096 4.096 21 C -0.052 4.052 22 C -0.138 4.138 23 C -0.060 4.060 24 C -0.135 4.135 25 C 0.510 3.490 26 O -0.503 6.503 27 O -0.357 6.357 28 C 0.037 3.963 29 C -0.033 4.033 30 H 0.052 0.948 31 H 0.034 0.966 32 H 0.022 0.978 33 H 0.032 0.968 34 H 0.091 0.909 35 H 0.263 0.737 36 H 0.345 0.655 37 H 0.095 0.905 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.145 0.855 41 H 0.133 0.867 42 H 0.136 0.864 43 H 0.063 0.937 44 H 0.101 0.899 45 H 0.063 0.937 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.395 13.048 12.756 18.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.142 4.142 3 C 0.110 3.890 4 H 0.049 0.951 5 C -0.592 4.592 6 H 0.075 0.925 7 C -0.132 4.132 8 N -0.519 5.519 9 Si 0.717 3.283 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.296 5.296 14 C 0.033 3.967 15 H 0.111 0.889 16 C 0.310 3.690 17 O -0.365 6.365 18 O -0.282 6.282 19 C -0.056 4.056 20 C -0.096 4.096 21 C -0.070 4.070 22 C -0.156 4.156 23 C -0.079 4.079 24 C -0.136 4.136 25 C 0.355 3.645 26 O -0.392 6.392 27 O -0.274 6.274 28 C -0.057 4.057 29 C -0.051 4.051 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.041 0.959 33 H 0.051 0.949 34 H 0.109 0.891 35 H 0.073 0.927 36 H 0.165 0.835 37 H 0.114 0.886 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.163 0.837 41 H 0.151 0.849 42 H 0.154 0.846 43 H 0.082 0.918 44 H 0.119 0.881 45 H 0.082 0.918 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.204 12.800 12.199 18.432 hybrid contribution 1.970 0.335 -0.382 2.034 sum -3.234 13.135 11.816 17.961 Atomic orbital electron populations 1.21659 0.98481 0.97944 1.00985 1.21468 0.92395 0.98501 1.01818 1.19269 0.92751 0.91497 0.85527 0.95124 1.21816 0.92190 1.38533 1.06650 0.92524 1.24907 0.98156 0.94725 0.95421 1.69878 1.35142 1.37223 1.09655 0.86638 0.85844 0.78501 0.77309 1.20577 1.21155 1.19914 1.60631 1.57006 1.01444 1.10548 1.19709 0.91595 0.92499 0.92888 0.88914 1.23788 0.91810 0.77960 0.75466 1.90592 1.40873 1.49566 1.55456 1.86524 1.34574 1.43140 1.63915 1.23151 0.81998 1.01669 0.98829 1.19598 0.99376 0.95805 0.94841 1.21556 0.95196 0.98955 0.91327 1.21165 1.00252 0.96037 0.98103 1.21449 0.93894 0.94917 0.97611 1.18949 1.03933 0.95401 0.95358 1.21243 0.78376 0.83764 0.81078 1.90855 1.46501 1.64953 1.36858 1.86532 1.66583 1.40181 1.34074 1.23271 0.94735 0.84130 1.03565 1.21213 0.94282 0.92732 0.96896 0.92869 0.94712 0.95916 0.94880 0.89117 0.92732 0.83497 0.88640 0.92029 0.92403 0.83720 0.84916 0.84634 0.91825 0.88052 0.91777 0.84017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 9.71 37.16 0.36 -2.49 16 2 C -0.10 -2.44 5.44 -26.74 -0.15 -2.59 16 3 C 0.22 5.18 1.80 -68.86 -0.12 5.06 16 4 H 0.03 0.83 7.66 -51.93 -0.40 0.43 16 5 C -0.55 -14.27 8.27 -34.44 -0.28 -14.56 16 6 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 7 C 0.07 1.90 5.30 -17.82 -0.09 1.80 16 8 N -0.88 -24.40 11.30 55.43 0.63 -23.77 16 9 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 13 N -0.66 -13.19 4.54 -103.39 -0.47 -13.66 16 14 C 0.15 2.66 2.52 -70.02 -0.18 2.49 16 15 H 0.09 1.85 7.49 -51.93 -0.39 1.46 16 16 C 0.47 8.84 6.82 36.00 0.25 9.09 16 17 O -0.48 -9.82 16.38 -18.74 -0.31 -10.12 16 18 O -0.36 -6.24 10.56 -39.26 -0.41 -6.65 16 19 C 0.04 0.50 10.56 101.05 1.07 1.56 16 20 C -0.10 -1.47 4.69 -104.68 -0.49 -1.96 16 21 C -0.05 -0.70 8.99 -39.49 -0.35 -1.06 16 22 C -0.14 -1.51 10.03 -39.64 -0.40 -1.90 16 23 C -0.06 -0.67 9.62 -39.17 -0.38 -1.05 16 24 C -0.14 -1.82 5.87 -104.98 -0.62 -2.43 16 25 C 0.51 7.02 7.90 34.61 0.27 7.29 16 26 O -0.50 -8.22 16.14 -19.25 -0.31 -8.53 16 27 O -0.36 -4.00 9.82 -40.51 -0.40 -4.40 16 28 C 0.04 0.30 10.56 101.05 1.07 1.36 16 29 C -0.03 -0.49 9.21 -39.17 -0.36 -0.85 16 30 H 0.05 1.12 7.85 -51.93 -0.41 0.71 16 31 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.09 2.40 5.99 -51.93 -0.31 2.09 16 35 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 36 H 0.34 6.58 7.66 -39.29 -0.30 6.28 16 37 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.06 0.83 8.13 -51.92 -0.42 0.41 16 39 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 40 H 0.15 1.99 7.72 -52.48 -0.40 1.58 16 41 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 42 H 0.14 1.19 7.61 -52.49 -0.40 0.79 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.14 2.19 7.63 -52.49 -0.40 1.79 16 LS Contribution 393.86 15.07 5.94 5.94 Total: -1.00 -30.89 393.86 -7.55 -38.44 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -6.78 Total: 7.27 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -0.41 Total: -0.23 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.16 Total: -37.43 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -1.43 Total: -29.71 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.89 -7.55 -38.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594006879.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.802 kcal (2) G-P(sol) polarization free energy of solvation -30.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds