Wall clock time and date at job start Tue Mar 31 2020 19:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47255 * 2 1 4 4 H 1.09003 * 109.47086 * 303.09186 * 3 2 1 5 5 C 1.50706 * 109.47327 * 183.09516 * 3 2 1 6 6 H 1.08000 * 119.99717 * 239.99715 * 5 3 2 7 7 C 1.37871 * 119.99951 * 59.99637 * 5 3 2 8 8 N 1.31513 * 120.00261 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 120.00014 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.46856 * 89.99996 * 9 7 5 11 11 H 1.48499 * 109.46979 * 209.99966 * 9 7 5 12 12 H 1.48500 * 109.46906 * 329.99766 * 9 7 5 13 13 N 1.46902 * 109.47488 * 63.09311 * 3 2 1 14 14 C 1.46902 * 111.00109 * 205.04722 * 13 3 2 15 15 H 1.09006 * 109.46856 * 325.62388 * 14 13 3 16 16 C 1.50694 * 109.47158 * 85.62927 * 14 13 3 17 17 O 1.20816 * 120.00476 * 26.00533 * 16 14 13 18 18 O 1.34229 * 119.99720 * 206.00542 * 16 14 13 19 19 C 1.45198 * 117.00209 * 180.02562 * 18 16 14 20 20 C 1.50698 * 109.46829 * 205.63078 * 14 13 3 21 21 C 1.38387 * 119.92593 * 319.72418 * 20 14 13 22 22 C 1.38346 * 120.30547 * 179.72586 * 21 20 14 23 23 C 1.37963 * 120.15134 * 0.55092 * 22 21 20 24 24 C 1.39618 * 119.84227 * 359.72278 * 23 22 21 25 25 C 1.47730 * 120.14539 * 180.02562 * 24 23 22 26 26 O 1.21475 * 119.99652 * 179.97438 * 25 24 23 27 27 O 1.34708 * 120.00061 * 359.97438 * 25 24 23 28 28 C 1.45203 * 116.99461 * 179.97438 * 27 25 24 29 29 C 1.37927 * 119.92767 * 139.99631 * 20 14 13 30 30 H 1.08997 * 109.47191 * 294.65305 * 1 2 3 31 31 H 1.09004 * 109.47083 * 54.65559 * 1 2 3 32 32 H 1.08995 * 109.47123 * 174.65589 * 1 2 3 33 33 H 1.09000 * 109.47391 * 119.99775 * 2 1 3 34 34 H 1.09003 * 109.47303 * 239.99672 * 2 1 3 35 35 H 0.96998 * 120.00716 * 179.97438 * 8 7 5 36 36 H 1.00904 * 110.99988 * 81.09027 * 13 3 2 37 37 H 1.08996 * 109.47325 * 180.02562 * 19 18 16 38 38 H 1.09011 * 109.46787 * 299.99984 * 19 18 16 39 39 H 1.08995 * 109.47637 * 59.99451 * 19 18 16 40 40 H 1.08006 * 119.84603 * 359.97438 * 21 20 14 41 41 H 1.07998 * 119.92882 * 180.25122 * 22 21 20 42 42 H 1.07999 * 120.08358 * 179.70533 * 23 22 21 43 43 H 1.08999 * 109.47543 * 60.00311 * 28 27 25 44 44 H 1.09007 * 109.46455 * 180.02562 * 28 27 25 45 45 H 1.09003 * 109.47355 * 299.99755 * 28 27 25 46 46 H 1.07999 * 120.07302 * 0.02562 * 29 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6321 1.9720 -0.8610 5 6 3.5451 1.4431 -0.0767 6 1 4.1258 1.8964 0.7130 7 6 4.1806 0.8651 -1.1550 8 7 3.4735 0.3135 -2.1170 9 14 6.0463 0.8653 -1.2498 10 1 6.5751 -0.3596 -0.5979 11 1 6.4696 0.8908 -2.6730 12 1 6.5770 2.0650 -0.5539 13 7 1.6123 2.1131 1.2350 14 6 1.5381 3.5680 1.0455 15 1 2.3220 3.8852 0.3576 16 6 0.1916 3.9322 0.4754 17 8 -0.7621 3.2177 0.6743 18 8 0.0518 5.0507 -0.2536 19 6 -1.2740 5.3391 -0.7707 20 6 1.7251 4.2575 2.3724 21 6 1.1342 3.7368 3.5103 22 6 1.3053 4.3602 4.7334 23 6 2.0579 5.5130 4.8244 24 6 2.6521 6.0469 3.6794 25 6 3.4598 7.2806 3.7692 26 8 3.9760 7.7425 2.7713 27 8 3.6238 7.8932 4.9577 28 6 4.4304 9.1006 4.9710 29 6 2.4800 5.4092 2.4490 30 1 -0.3633 0.4286 0.9340 31 1 -0.3633 0.5945 -0.8383 32 1 -0.3633 -1.0231 -0.0957 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 3.9205 -0.0928 -2.8758 36 1 2.2229 1.8792 2.0036 37 1 -1.2476 6.2680 -1.3403 38 1 -1.5960 4.5244 -1.4195 39 1 -1.9734 5.4409 0.0590 40 1 0.5400 2.8373 3.4439 41 1 0.8448 3.9464 5.6183 42 1 2.1868 6.0014 5.7790 43 1 3.9789 9.8465 4.3169 44 1 4.4821 9.4916 5.9872 45 1 5.4359 8.8697 4.6193 46 1 2.9366 5.8172 1.5594 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594006879.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:48 Heat of formation + Delta-G solvation = -159.392296 kcal Electronic energy + Delta-G solvation = -29598.946592 eV Core-core repulsion = 25453.288339 eV Total energy + Delta-G solvation = -4145.658254 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.85404 -41.42958 -39.98628 -38.17439 -37.51299 -37.18316 -35.06303 -33.53507 -32.38540 -31.65962 -29.43910 -28.71339 -28.28766 -26.61817 -25.15171 -24.50886 -23.42579 -22.22809 -21.47152 -21.20575 -19.29784 -18.55873 -18.44902 -18.15665 -17.59090 -17.40635 -17.17002 -17.03112 -16.74604 -16.23424 -15.85069 -15.30120 -15.12677 -14.80955 -14.62180 -14.57585 -14.37992 -14.21788 -14.05396 -13.58225 -13.41768 -13.21695 -13.10286 -13.04465 -13.01660 -12.85635 -12.66584 -12.57890 -12.16811 -12.15507 -11.83903 -11.75727 -11.70862 -11.59055 -11.48206 -11.44050 -11.06224 -10.49057 -10.09094 -9.92524 -9.27782 -8.09014 -6.30681 -0.38229 0.19356 1.23213 1.38747 1.40852 1.42064 1.49274 1.60328 1.79318 2.39311 2.70191 3.13169 3.40641 3.57433 3.69083 3.88881 3.97409 4.12412 4.23517 4.28886 4.30037 4.31776 4.33873 4.37473 4.46420 4.57774 4.65059 4.68867 4.75269 4.78568 4.88153 4.93047 5.08913 5.18193 5.20418 5.34132 5.36386 5.41835 5.43360 5.50610 5.59102 5.74379 5.79481 6.04027 6.05893 6.23275 6.61861 6.63583 6.83824 6.93026 7.41302 8.89415 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.009446 B = 0.004040 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2963.643365 B = 6929.803390 C = 8371.756763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.098 4.098 3 C 0.228 3.772 4 H -0.009 1.009 5 C -0.561 4.561 6 H 0.057 0.943 7 C 0.025 3.975 8 N -0.909 5.909 9 Si 0.949 3.051 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.652 5.652 14 C 0.147 3.853 15 H 0.067 0.933 16 C 0.470 3.530 17 O -0.501 6.501 18 O -0.374 6.374 19 C 0.030 3.970 20 C -0.110 4.110 21 C -0.056 4.056 22 C -0.121 4.121 23 C -0.042 4.042 24 C -0.144 4.144 25 C 0.513 3.487 26 O -0.539 6.539 27 O -0.350 6.350 28 C 0.028 3.972 29 C -0.047 4.047 30 H 0.058 0.942 31 H 0.016 0.984 32 H 0.043 0.957 33 H 0.037 0.963 34 H 0.062 0.938 35 H 0.263 0.737 36 H 0.351 0.649 37 H 0.131 0.869 38 H 0.054 0.946 39 H 0.068 0.932 40 H 0.142 0.858 41 H 0.173 0.827 42 H 0.169 0.831 43 H 0.062 0.938 44 H 0.140 0.860 45 H 0.059 0.941 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.500 13.937 15.762 21.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.137 4.137 3 C 0.119 3.881 4 H 0.009 0.991 5 C -0.600 4.600 6 H 0.075 0.925 7 C -0.176 4.176 8 N -0.548 5.548 9 Si 0.775 3.225 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.285 5.285 14 C 0.035 3.965 15 H 0.085 0.915 16 C 0.311 3.689 17 O -0.388 6.388 18 O -0.291 6.291 19 C -0.063 4.063 20 C -0.110 4.110 21 C -0.074 4.074 22 C -0.139 4.139 23 C -0.060 4.060 24 C -0.145 4.145 25 C 0.359 3.641 26 O -0.431 6.431 27 O -0.266 6.266 28 C -0.065 4.065 29 C -0.066 4.066 30 H 0.077 0.923 31 H 0.036 0.964 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.171 0.829 37 H 0.149 0.851 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.160 0.840 41 H 0.190 0.810 42 H 0.187 0.813 43 H 0.081 0.919 44 H 0.158 0.842 45 H 0.078 0.922 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.313 13.711 15.232 21.172 hybrid contribution 1.966 0.187 -1.266 2.346 sum -3.347 13.898 13.966 19.985 Atomic orbital electron populations 1.21487 0.96635 0.98931 1.00442 1.21329 0.93941 0.97896 1.00537 1.18963 0.91680 0.91607 0.85805 0.99061 1.22112 0.93348 1.37985 1.06593 0.92502 1.25623 1.02123 0.94606 0.95249 1.70009 1.36617 1.38031 1.10129 0.85694 0.81083 0.78558 0.77132 1.19826 1.21138 1.19755 1.60488 1.56560 1.02544 1.08904 1.19606 0.90842 0.91565 0.94461 0.91500 1.23812 0.91652 0.78132 0.75258 1.90564 1.41470 1.50290 1.56433 1.86504 1.36892 1.42274 1.63440 1.23507 0.80403 1.03005 0.99415 1.19338 1.01323 0.96451 0.93930 1.21622 0.95026 0.99085 0.91710 1.21540 0.98998 0.95185 0.98129 1.21818 0.91951 0.94379 0.97869 1.19034 1.04441 0.95529 0.95525 1.21334 0.77731 0.83709 0.81311 1.90839 1.48057 1.65974 1.38194 1.86515 1.66711 1.41063 1.32352 1.23620 0.93988 0.82868 1.05983 1.21069 0.94979 0.93161 0.97344 0.92334 0.96427 0.93841 0.94410 0.91955 0.92810 0.82878 0.85133 0.92739 0.91309 0.83998 0.80988 0.81333 0.91919 0.84230 0.92171 0.85887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.05 9.71 71.98 0.70 -4.35 16 2 C -0.10 -4.75 5.44 30.59 0.17 -4.59 16 3 C 0.23 11.29 1.80 44.17 0.08 11.37 16 4 H -0.01 -0.49 7.66 -2.39 -0.02 -0.51 16 5 C -0.56 -29.76 8.27 25.60 0.21 -29.55 16 6 H 0.06 2.95 7.74 -2.91 -0.02 2.92 16 7 C 0.02 1.34 5.30 84.65 0.45 1.79 16 8 N -0.91 -51.80 11.30 21.44 0.24 -51.56 16 9 Si 0.95 43.20 29.54 68.60 2.03 45.23 16 10 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 11 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 12 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 13 N -0.65 -26.64 4.54 -481.03 -2.19 -28.82 16 14 C 0.15 5.64 2.52 43.42 0.11 5.75 16 15 H 0.07 2.88 7.49 -2.38 -0.02 2.86 16 16 C 0.47 18.31 6.82 71.23 0.49 18.79 16 17 O -0.50 -20.86 16.38 21.99 0.36 -20.50 16 18 O -0.37 -13.18 10.56 -51.41 -0.54 -13.72 16 19 C 0.03 0.77 10.56 113.37 1.20 1.97 16 20 C -0.11 -3.42 4.69 -19.90 -0.09 -3.51 16 21 C -0.06 -1.43 8.99 22.33 0.20 -1.23 16 22 C -0.12 -2.20 10.03 22.23 0.22 -1.98 16 23 C -0.04 -0.79 9.62 22.54 0.22 -0.57 16 24 C -0.14 -3.69 5.87 -20.10 -0.12 -3.81 16 25 C 0.51 13.63 7.90 70.33 0.56 14.18 16 26 O -0.54 -17.85 16.14 19.92 0.32 -17.53 16 27 O -0.35 -7.02 9.82 -56.18 -0.55 -7.57 16 28 C 0.03 0.39 10.56 113.37 1.20 1.59 16 29 C -0.05 -1.42 9.21 22.53 0.21 -1.22 16 30 H 0.06 2.43 7.85 -2.39 -0.02 2.42 16 31 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.06 3.39 5.99 -2.39 -0.01 3.38 16 35 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 36 H 0.35 13.53 7.66 -89.69 -0.69 12.84 16 37 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.05 1.49 8.13 -2.38 -0.02 1.47 16 39 H 0.07 1.63 8.13 -2.39 -0.02 1.62 16 40 H 0.14 3.70 7.72 -2.91 -0.02 3.68 16 41 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 42 H 0.17 2.09 7.61 -2.91 -0.02 2.06 16 43 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.14 0.86 8.14 -2.38 -0.02 0.84 16 45 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.12 4.11 7.63 -2.91 -0.02 4.09 16 Total: -1.00 -69.39 393.86 5.76 -63.63 By element: Atomic # 1 Polarization: 25.91 SS G_CDS: 0.31 Total: 26.21 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: 5.79 Total: 4.64 kcal Atomic # 7 Polarization: -78.44 SS G_CDS: -1.94 Total: -80.39 kcal Atomic # 8 Polarization: -58.91 SS G_CDS: -0.41 Total: -59.32 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -69.39 5.76 -63.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594006879.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.762 kcal (2) G-P(sol) polarization free energy of solvation -69.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds