Wall clock time and date at job start Tue Mar 31 2020 19:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36875 * 119.99995 * 2 1 4 4 H 1.07996 * 120.00030 * 200.07216 * 3 2 1 5 5 C 1.39040 * 119.99604 * 20.07792 * 3 2 1 6 6 N 1.31355 * 120.00559 * 17.23089 * 5 3 2 7 7 Si 1.86810 * 119.99594 * 197.23003 * 5 3 2 8 8 H 1.48500 * 109.46914 * 94.98361 * 7 5 3 9 9 H 1.48504 * 109.47136 * 214.98275 * 7 5 3 10 10 H 1.48499 * 109.47244 * 334.98395 * 7 5 3 11 11 C 1.34781 * 119.99883 * 180.02562 * 2 1 3 12 12 O 1.21592 * 119.99689 * 183.92619 * 11 2 1 13 13 C 1.47739 * 119.99985 * 3.92368 * 11 2 1 14 14 C 1.39678 * 120.12435 * 320.41135 * 13 11 2 15 15 C 1.37939 * 119.95869 * 180.02562 * 14 13 11 16 16 C 1.38308 * 120.21123 * 359.74497 * 15 14 13 17 17 C 1.38820 * 120.25189 * 0.51080 * 16 15 14 18 18 O 1.35910 * 119.98346 * 179.76443 * 17 16 15 19 19 C 1.42898 * 116.99648 * 359.72752 * 18 17 16 20 20 C 1.50701 * 109.47221 * 179.97438 * 19 18 17 21 21 O 1.20830 * 119.99610 * 359.97438 * 20 19 18 22 22 O 1.34225 * 120.00372 * 179.72274 * 20 19 18 23 23 C 1.45205 * 117.00134 * 180.27473 * 22 20 19 24 24 C 1.52999 * 109.47052 * 60.00162 * 23 22 20 25 25 C 1.53005 * 109.47109 * 179.97438 * 23 22 20 26 26 C 1.53000 * 109.47014 * 299.99858 * 23 22 20 27 27 C 1.38476 * 120.03734 * 359.49315 * 17 16 15 28 28 H 1.08993 * 109.47328 * 264.90508 * 1 2 3 29 29 H 1.09003 * 109.47103 * 24.90605 * 1 2 3 30 30 H 1.09007 * 109.47585 * 144.90455 * 1 2 3 31 31 H 0.97003 * 120.00375 * 180.02562 * 6 5 3 32 32 H 1.07998 * 120.01875 * 359.97438 * 14 13 11 33 33 H 1.08005 * 119.89302 * 179.97438 * 15 14 13 34 34 H 1.07997 * 119.87196 * 180.25486 * 16 15 14 35 35 H 1.09002 * 109.47514 * 59.99918 * 19 18 17 36 36 H 1.08999 * 109.47383 * 299.99397 * 19 18 17 37 37 H 1.08998 * 109.46971 * 59.99899 * 24 23 22 38 38 H 1.09000 * 109.46927 * 179.97438 * 24 23 22 39 39 H 1.08998 * 109.46839 * 299.99996 * 24 23 22 40 40 H 1.09002 * 109.46682 * 59.99682 * 25 23 22 41 41 H 1.08991 * 109.47002 * 179.97438 * 25 23 22 42 42 H 1.08998 * 109.47308 * 300.00342 * 25 23 22 43 43 H 1.09005 * 109.47184 * 60.00241 * 26 23 22 44 44 H 1.09000 * 109.47061 * 180.02562 * 26 23 22 45 45 H 1.09002 * 109.47358 * 300.00044 * 26 23 22 46 46 H 1.07997 * 120.10475 * 180.23555 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1493 1.1854 0.0000 4 1 3.1801 1.2138 -0.3210 5 6 1.5174 2.3529 0.4134 6 7 0.4068 2.2868 1.1116 7 14 2.2480 4.0155 -0.0243 8 1 1.6073 4.5273 -1.2623 9 1 2.0083 4.9698 1.0880 10 1 3.7092 3.8712 -0.2463 11 6 2.1388 -1.1672 -0.0005 12 8 3.3526 -1.1685 0.0716 13 6 1.4027 -2.4452 -0.0886 14 6 0.2025 -2.6121 0.6060 15 6 -0.4818 -3.8069 0.5217 16 6 0.0141 -4.8396 -0.2532 17 6 1.2088 -4.6851 -0.9430 18 8 1.6934 -5.7053 -1.6990 19 6 0.9246 -6.9093 -1.7333 20 6 1.6121 -7.9194 -2.6155 21 8 2.6533 -7.6369 -3.1595 22 8 1.0703 -9.1345 -2.7929 23 6 1.7904 -10.0585 -3.6510 24 6 3.1844 -10.3103 -3.0729 25 6 1.0256 -11.3812 -3.7315 26 6 1.9201 -9.4577 -5.0521 27 6 1.9043 -3.4902 -0.8657 28 1 -0.3633 -0.0913 1.0235 29 1 -0.3633 0.9321 -0.4328 30 1 -0.3634 -0.8409 -0.5909 31 1 -0.0342 3.1013 1.3997 32 1 -0.1892 -1.8065 1.2093 33 1 -1.4095 -3.9349 1.0596 34 1 -0.5282 -5.7713 -0.3185 35 1 -0.0675 -6.6958 -2.1309 36 1 0.8329 -7.3107 -0.7240 37 1 3.0919 -10.7384 -2.0748 38 1 3.7248 -11.0043 -3.7168 39 1 3.7294 -9.3682 -3.0152 40 1 0.0323 -11.2021 -4.1430 41 1 1.5659 -12.0746 -4.3759 42 1 0.9335 -11.8091 -2.7332 43 1 2.4652 -8.5154 -4.9944 44 1 2.4602 -10.1514 -5.6963 45 1 0.9269 -9.2782 -5.4639 46 1 2.8319 -3.3674 -1.4050 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597011499.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:30 Heat of formation + Delta-G solvation = -110.090062 kcal Electronic energy + Delta-G solvation = -28320.673016 eV Core-core repulsion = 24177.152668 eV Total energy + Delta-G solvation = -4143.520348 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.23485 -40.07969 -38.72209 -37.33716 -36.49640 -34.77257 -34.49937 -31.87006 -30.93436 -30.15702 -28.58507 -27.81126 -27.77376 -26.34056 -25.04473 -23.29311 -22.39539 -21.87252 -20.00773 -19.58821 -18.07003 -17.23075 -17.02582 -16.96744 -16.81501 -16.06311 -15.80342 -15.53194 -15.26506 -14.64585 -14.56551 -14.34871 -14.08380 -13.99869 -13.71560 -13.40660 -12.98121 -12.89893 -12.77590 -12.58640 -12.40000 -12.34879 -12.30609 -11.99211 -11.79639 -11.72049 -11.55380 -11.41455 -11.09838 -11.09291 -10.87137 -10.77161 -10.60773 -10.36847 -10.30586 -10.22031 -9.06201 -8.72572 -8.42320 -8.01843 -7.78067 -6.44124 -3.90480 1.35452 1.67789 1.83936 1.87543 3.12776 3.22503 3.28331 3.36239 3.67823 4.08271 4.19179 4.29856 4.30911 4.33957 4.49277 4.65000 4.70779 4.79895 4.99905 5.05715 5.07830 5.11748 5.14579 5.29464 5.29710 5.41637 5.44657 5.48591 5.59882 5.62290 5.72767 5.87449 5.88246 5.90868 6.13722 6.22822 6.33625 6.41124 6.62179 6.76710 6.83217 6.87715 7.13401 7.41028 7.49088 7.51858 8.04926 8.41294 9.10695 9.32631 9.91718 10.60392 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.028903 B = 0.002016 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.540421 B =13888.930247 C =14410.444272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.428 5.428 3 C -0.304 4.304 4 H 0.104 0.896 5 C 0.031 3.969 6 N -0.872 5.872 7 Si 0.928 3.072 8 H -0.277 1.277 9 H -0.283 1.283 10 H -0.267 1.267 11 C 0.471 3.529 12 O -0.585 6.585 13 C -0.051 4.051 14 C -0.133 4.133 15 C -0.089 4.089 16 C -0.209 4.209 17 C 0.114 3.886 18 O -0.295 6.295 19 C 0.068 3.932 20 C 0.466 3.534 21 O -0.476 6.476 22 O -0.349 6.349 23 C 0.119 3.881 24 C -0.185 4.185 25 C -0.140 4.140 26 C -0.185 4.185 27 C -0.104 4.104 28 H 0.055 0.945 29 H 0.077 0.923 30 H 0.036 0.964 31 H 0.270 0.730 32 H 0.140 0.860 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.063 0.937 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.705 -23.900 -6.970 25.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.144 5.144 3 C -0.432 4.432 4 H 0.121 0.879 5 C -0.173 4.173 6 N -0.510 5.510 7 Si 0.754 3.246 8 H -0.203 1.203 9 H -0.208 1.208 10 H -0.191 1.191 11 C 0.259 3.741 12 O -0.470 6.470 13 C -0.055 4.055 14 C -0.151 4.151 15 C -0.107 4.107 16 C -0.228 4.228 17 C 0.070 3.930 18 O -0.209 6.209 19 C -0.008 4.008 20 C 0.307 3.693 21 O -0.361 6.361 22 O -0.268 6.268 23 C 0.083 3.917 24 C -0.242 4.242 25 C -0.197 4.197 26 C -0.242 4.242 27 C -0.124 4.124 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.158 0.842 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.104 0.896 44 H 0.092 0.908 45 H 0.082 0.918 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.744 -23.658 -7.154 25.375 hybrid contribution -0.074 0.674 -0.040 0.679 sum -5.818 -22.984 -7.194 24.776 Atomic orbital electron populations 1.21843 0.81123 1.00763 1.00358 1.43524 1.05708 1.04673 1.60515 1.19764 0.98675 0.83059 1.41681 0.87865 1.25369 0.96604 1.00233 0.95142 1.70007 1.18837 1.29458 1.32711 0.85876 0.79754 0.80842 0.78105 1.20263 1.20843 1.19121 1.17864 0.87386 0.82908 0.85894 1.90628 1.13432 1.86567 1.56418 1.20114 0.94366 0.95077 0.95897 1.21748 0.94655 0.98264 1.00479 1.20823 0.99572 0.92483 0.97839 1.21187 0.97206 1.01014 1.03383 1.18726 0.93583 0.87611 0.93074 1.86083 1.48003 1.20678 1.66141 1.21834 0.94938 0.84023 1.00022 1.22890 0.84000 0.82065 0.80367 1.90645 1.22230 1.78284 1.44938 1.86482 1.52713 1.23352 1.64222 1.22254 0.92068 0.88073 0.89302 1.22513 0.95786 1.04412 1.01525 1.21858 1.00830 0.93771 1.03261 1.22514 1.03207 1.03669 0.94835 1.20414 1.00944 0.89855 1.01164 0.92690 0.90402 0.94556 0.91971 0.84220 0.85578 0.85773 0.87819 0.87809 0.91840 0.90845 0.89636 0.91360 0.90169 0.91352 0.89633 0.90849 0.91843 0.84572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.27 7.20 59.84 0.43 2.70 16 2 N -0.43 -11.13 3.01 -123.32 -0.37 -11.50 16 3 C -0.30 -8.48 9.28 -15.00 -0.14 -8.62 16 4 H 0.10 3.02 7.43 -52.49 -0.39 2.63 16 5 C 0.03 0.80 4.96 -17.46 -0.09 0.72 16 6 N -0.87 -22.72 10.84 55.50 0.60 -22.12 16 7 Si 0.93 20.44 29.59 -169.99 -5.03 15.41 16 8 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 9 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 11 C 0.47 12.09 7.30 -12.38 -0.09 12.00 16 12 O -0.58 -17.11 16.61 5.29 0.09 -17.02 16 13 C -0.05 -1.05 5.20 -104.99 -0.55 -1.60 16 14 C -0.13 -2.29 7.60 -39.15 -0.30 -2.59 16 15 C -0.09 -1.22 10.02 -39.67 -0.40 -1.61 16 16 C -0.21 -2.70 9.03 -39.34 -0.36 -3.06 16 17 C 0.11 1.79 6.68 -39.28 -0.26 1.53 16 18 O -0.30 -4.37 9.67 -39.41 -0.38 -4.75 16 19 C 0.07 0.69 5.33 36.01 0.19 0.89 16 20 C 0.47 5.29 7.34 36.01 0.26 5.56 16 21 O -0.48 -6.83 12.00 -25.48 -0.31 -7.13 16 22 O -0.35 -3.35 9.89 -39.24 -0.39 -3.74 16 23 C 0.12 0.97 1.13 -90.62 -0.10 0.86 16 24 C -0.19 -1.52 8.37 37.16 0.31 -1.21 16 25 C -0.14 -0.76 8.85 37.16 0.33 -0.43 16 26 C -0.19 -1.52 8.37 37.16 0.31 -1.20 16 27 C -0.10 -1.99 9.58 -39.00 -0.37 -2.36 16 28 H 0.05 1.20 6.60 -51.93 -0.34 0.86 16 29 H 0.08 1.82 6.55 -51.93 -0.34 1.48 16 30 H 0.04 0.70 5.95 -51.93 -0.31 0.39 16 31 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 32 H 0.14 2.43 5.34 -52.49 -0.28 2.15 16 33 H 0.13 1.32 8.06 -52.48 -0.42 0.89 16 34 H 0.12 1.14 6.28 -52.49 -0.33 0.81 16 35 H 0.10 0.80 7.64 -51.93 -0.40 0.40 16 36 H 0.10 0.81 7.67 -51.93 -0.40 0.41 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.92 5.89 -51.93 -0.31 0.62 16 40 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.08 0.92 5.89 -51.93 -0.31 0.61 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.14 2.74 8.06 -52.49 -0.42 2.32 16 LS Contribution 375.84 15.07 5.66 5.66 Total: -1.00 -33.40 375.84 -7.27 -40.67 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -6.34 Total: 2.95 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -0.81 Total: 1.56 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: 0.23 Total: -33.62 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -0.99 Total: -32.64 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.03 Total: 15.41 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.40 -7.27 -40.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597011499.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.419 kcal (2) G-P(sol) polarization free energy of solvation -33.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds