Wall clock time and date at job start Tue Mar 31 2020 19:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36875 * 119.99995 * 2 1 4 4 H 1.07996 * 120.00030 * 200.07216 * 3 2 1 5 5 C 1.39040 * 119.99604 * 20.07792 * 3 2 1 6 6 N 1.31355 * 120.00559 * 17.23089 * 5 3 2 7 7 Si 1.86810 * 119.99594 * 197.23003 * 5 3 2 8 8 H 1.48500 * 109.46914 * 94.98361 * 7 5 3 9 9 H 1.48504 * 109.47136 * 214.98275 * 7 5 3 10 10 H 1.48499 * 109.47244 * 334.98395 * 7 5 3 11 11 C 1.34781 * 119.99883 * 180.02562 * 2 1 3 12 12 O 1.21592 * 119.99689 * 183.92619 * 11 2 1 13 13 C 1.47739 * 119.99985 * 3.92368 * 11 2 1 14 14 C 1.39678 * 120.12435 * 320.41135 * 13 11 2 15 15 C 1.37939 * 119.95869 * 180.02562 * 14 13 11 16 16 C 1.38308 * 120.21123 * 359.74497 * 15 14 13 17 17 C 1.38820 * 120.25189 * 0.51080 * 16 15 14 18 18 O 1.35910 * 119.98346 * 179.76443 * 17 16 15 19 19 C 1.42898 * 116.99648 * 359.72752 * 18 17 16 20 20 C 1.50701 * 109.47221 * 179.97438 * 19 18 17 21 21 O 1.20830 * 119.99610 * 359.97438 * 20 19 18 22 22 O 1.34225 * 120.00372 * 179.72274 * 20 19 18 23 23 C 1.45205 * 117.00134 * 180.27473 * 22 20 19 24 24 C 1.52999 * 109.47052 * 60.00162 * 23 22 20 25 25 C 1.53005 * 109.47109 * 179.97438 * 23 22 20 26 26 C 1.53000 * 109.47014 * 299.99858 * 23 22 20 27 27 C 1.38476 * 120.03734 * 359.49315 * 17 16 15 28 28 H 1.08993 * 109.47328 * 264.90508 * 1 2 3 29 29 H 1.09003 * 109.47103 * 24.90605 * 1 2 3 30 30 H 1.09007 * 109.47585 * 144.90455 * 1 2 3 31 31 H 0.97003 * 120.00375 * 180.02562 * 6 5 3 32 32 H 1.07998 * 120.01875 * 359.97438 * 14 13 11 33 33 H 1.08005 * 119.89302 * 179.97438 * 15 14 13 34 34 H 1.07997 * 119.87196 * 180.25486 * 16 15 14 35 35 H 1.09002 * 109.47514 * 59.99918 * 19 18 17 36 36 H 1.08999 * 109.47383 * 299.99397 * 19 18 17 37 37 H 1.08998 * 109.46971 * 59.99899 * 24 23 22 38 38 H 1.09000 * 109.46927 * 179.97438 * 24 23 22 39 39 H 1.08998 * 109.46839 * 299.99996 * 24 23 22 40 40 H 1.09002 * 109.46682 * 59.99682 * 25 23 22 41 41 H 1.08991 * 109.47002 * 179.97438 * 25 23 22 42 42 H 1.08998 * 109.47308 * 300.00342 * 25 23 22 43 43 H 1.09005 * 109.47184 * 60.00241 * 26 23 22 44 44 H 1.09000 * 109.47061 * 180.02562 * 26 23 22 45 45 H 1.09002 * 109.47358 * 300.00044 * 26 23 22 46 46 H 1.07997 * 120.10475 * 180.23555 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1493 1.1854 0.0000 4 1 3.1801 1.2138 -0.3210 5 6 1.5174 2.3529 0.4134 6 7 0.4068 2.2868 1.1116 7 14 2.2480 4.0155 -0.0243 8 1 1.6073 4.5273 -1.2623 9 1 2.0083 4.9698 1.0880 10 1 3.7092 3.8712 -0.2463 11 6 2.1388 -1.1672 -0.0005 12 8 3.3526 -1.1685 0.0716 13 6 1.4027 -2.4452 -0.0886 14 6 0.2025 -2.6121 0.6060 15 6 -0.4818 -3.8069 0.5217 16 6 0.0141 -4.8396 -0.2532 17 6 1.2088 -4.6851 -0.9430 18 8 1.6934 -5.7053 -1.6990 19 6 0.9246 -6.9093 -1.7333 20 6 1.6121 -7.9194 -2.6155 21 8 2.6533 -7.6369 -3.1595 22 8 1.0703 -9.1345 -2.7929 23 6 1.7904 -10.0585 -3.6510 24 6 3.1844 -10.3103 -3.0729 25 6 1.0256 -11.3812 -3.7315 26 6 1.9201 -9.4577 -5.0521 27 6 1.9043 -3.4902 -0.8657 28 1 -0.3633 -0.0913 1.0235 29 1 -0.3633 0.9321 -0.4328 30 1 -0.3634 -0.8409 -0.5909 31 1 -0.0342 3.1013 1.3997 32 1 -0.1892 -1.8065 1.2093 33 1 -1.4095 -3.9349 1.0596 34 1 -0.5282 -5.7713 -0.3185 35 1 -0.0675 -6.6958 -2.1309 36 1 0.8329 -7.3107 -0.7240 37 1 3.0919 -10.7384 -2.0748 38 1 3.7248 -11.0043 -3.7168 39 1 3.7294 -9.3682 -3.0152 40 1 0.0323 -11.2021 -4.1430 41 1 1.5659 -12.0746 -4.3759 42 1 0.9335 -11.8091 -2.7332 43 1 2.4652 -8.5154 -4.9944 44 1 2.4602 -10.1514 -5.6963 45 1 0.9269 -9.2782 -5.4639 46 1 2.8319 -3.3674 -1.4050 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597011499.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:29 Heat of formation + Delta-G solvation = -130.396251 kcal Electronic energy + Delta-G solvation = -28321.553559 eV Core-core repulsion = 24177.152668 eV Total energy + Delta-G solvation = -4144.400891 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.07498 -41.35842 -40.31332 -38.39225 -37.68292 -36.80766 -35.17008 -33.83680 -32.17873 -31.48058 -29.60554 -28.41530 -28.30334 -28.19134 -26.89259 -24.57205 -23.57530 -23.02920 -21.16493 -20.71895 -19.36181 -18.93531 -18.27165 -17.81852 -17.76222 -17.53935 -17.05995 -16.76366 -16.39767 -16.28420 -15.96216 -15.70004 -15.28868 -14.99396 -14.88932 -14.60759 -14.43096 -14.04773 -13.77536 -13.57031 -13.54463 -13.39884 -13.23411 -13.10383 -12.97598 -12.89568 -12.75774 -12.57775 -12.46163 -12.38653 -12.25476 -12.13413 -12.01505 -11.94831 -11.45785 -11.04904 -11.02871 -10.54770 -9.96198 -9.78992 -9.25392 -8.44839 -6.02389 0.01193 0.41975 1.02364 1.04413 1.36358 1.39917 1.52852 1.98364 2.22351 2.43681 2.76569 3.01412 3.10380 3.43437 3.70951 3.75205 3.81070 3.86377 3.92407 4.02031 4.04776 4.15419 4.28445 4.36064 4.54356 4.57459 4.58080 4.62290 4.73849 4.80521 4.85668 4.87753 4.92962 4.95686 5.12227 5.19846 5.23331 5.26524 5.26566 5.37517 5.40542 5.44727 5.51958 5.65195 6.01962 6.29024 6.40516 6.69746 7.06856 7.33447 7.92587 8.58664 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.028903 B = 0.002016 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.540421 B =13888.930247 C =14410.444272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.441 5.441 3 C -0.351 4.351 4 H 0.071 0.929 5 C 0.003 3.997 6 N -0.882 5.882 7 Si 0.993 3.007 8 H -0.262 1.262 9 H -0.268 1.268 10 H -0.278 1.278 11 C 0.457 3.543 12 O -0.641 6.641 13 C -0.080 4.080 14 C -0.139 4.139 15 C -0.068 4.068 16 C -0.180 4.180 17 C 0.123 3.877 18 O -0.321 6.321 19 C 0.059 3.941 20 C 0.465 3.535 21 O -0.516 6.516 22 O -0.343 6.343 23 C 0.108 3.892 24 C -0.184 4.184 25 C -0.135 4.135 26 C -0.183 4.183 27 C -0.132 4.132 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.279 0.721 32 H 0.136 0.864 33 H 0.176 0.824 34 H 0.181 0.819 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.054 0.946 40 H 0.073 0.927 41 H 0.098 0.902 42 H 0.073 0.927 43 H 0.054 0.946 44 H 0.090 0.910 45 H 0.069 0.931 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.458 -26.543 -6.646 29.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.157 5.157 3 C -0.479 4.479 4 H 0.089 0.911 5 C -0.200 4.200 6 N -0.519 5.519 7 Si 0.816 3.184 8 H -0.186 1.186 9 H -0.193 1.193 10 H -0.203 1.203 11 C 0.248 3.752 12 O -0.531 6.531 13 C -0.083 4.083 14 C -0.158 4.158 15 C -0.085 4.085 16 C -0.198 4.198 17 C 0.078 3.922 18 O -0.236 6.236 19 C -0.016 4.016 20 C 0.308 3.692 21 O -0.404 6.404 22 O -0.261 6.261 23 C 0.073 3.927 24 C -0.241 4.241 25 C -0.191 4.191 26 C -0.240 4.240 27 C -0.152 4.152 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.153 0.847 33 H 0.194 0.806 34 H 0.198 0.802 35 H 0.158 0.842 36 H 0.156 0.844 37 H 0.087 0.913 38 H 0.109 0.891 39 H 0.073 0.927 40 H 0.092 0.908 41 H 0.116 0.884 42 H 0.092 0.908 43 H 0.073 0.927 44 H 0.109 0.891 45 H 0.088 0.912 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -9.567 -26.326 -6.824 28.829 hybrid contribution 1.062 1.281 -0.167 1.672 sum -8.505 -25.045 -6.991 27.358 Atomic orbital electron populations 1.21820 0.78910 1.01135 1.00837 1.43766 1.07174 1.04364 1.60378 1.19668 0.98350 0.85066 1.44825 0.91121 1.26125 0.96933 1.02853 0.94135 1.70041 1.19094 1.30846 1.31946 0.84939 0.78322 0.76503 0.78673 1.18649 1.19315 1.20286 1.18785 0.87206 0.84703 0.84469 1.90552 1.16063 1.87813 1.58652 1.19682 0.96314 0.92987 0.99324 1.21761 0.93584 1.00230 1.00199 1.21322 1.00202 0.90363 0.96661 1.21758 0.95233 1.02689 1.00159 1.18613 0.93974 0.86553 0.93048 1.86044 1.49660 1.21971 1.65922 1.22304 0.95410 0.81984 1.01886 1.23267 0.83460 0.82664 0.79842 1.90660 1.24062 1.79057 1.46620 1.86487 1.52539 1.22765 1.64276 1.22564 0.92398 0.88946 0.88777 1.22491 0.95952 1.03208 1.02423 1.21877 1.00928 0.92191 1.04142 1.22490 1.03318 1.02659 0.95579 1.20224 1.00827 0.91853 1.02286 0.92478 0.91919 0.91600 0.91066 0.84656 0.80626 0.80211 0.84222 0.84372 0.91256 0.89079 0.92735 0.90759 0.88362 0.90785 0.92710 0.89095 0.91211 0.87871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.20 7.20 127.77 0.92 6.12 16 2 N -0.44 -24.25 3.01 -662.32 -2.00 -26.25 16 3 C -0.35 -20.83 9.28 84.10 0.78 -20.05 16 4 H 0.07 4.53 7.43 -2.91 -0.02 4.50 16 5 C 0.00 0.17 4.96 84.96 0.42 0.59 16 6 N -0.88 -46.22 10.84 21.68 0.23 -45.98 16 7 Si 0.99 42.67 29.59 68.60 2.03 44.70 16 8 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 9 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 11 C 0.46 25.25 7.30 86.75 0.63 25.88 16 12 O -0.64 -41.06 16.61 -4.00 -0.07 -41.13 16 13 C -0.08 -3.42 5.20 -20.10 -0.10 -3.53 16 14 C -0.14 -4.59 7.60 22.55 0.17 -4.42 16 15 C -0.07 -1.51 10.02 22.22 0.22 -1.29 16 16 C -0.18 -3.69 9.03 22.43 0.20 -3.49 16 17 C 0.12 3.63 6.68 22.47 0.15 3.79 16 18 O -0.32 -9.08 9.67 -73.46 -0.71 -9.80 16 19 C 0.06 0.98 5.33 71.24 0.38 1.36 16 20 C 0.46 9.88 7.34 71.24 0.52 10.40 16 21 O -0.52 -15.15 12.00 28.38 0.34 -14.80 16 22 O -0.34 -5.79 9.89 -51.37 -0.51 -6.30 16 23 C 0.11 1.57 1.13 -10.79 -0.01 1.56 16 24 C -0.18 -2.85 8.37 71.98 0.60 -2.25 16 25 C -0.13 -1.04 8.85 71.98 0.64 -0.41 16 26 C -0.18 -2.82 8.37 71.98 0.60 -2.22 16 27 C -0.13 -5.27 9.58 22.64 0.22 -5.06 16 28 H 0.06 2.51 6.60 -2.39 -0.02 2.49 16 29 H 0.06 2.97 6.55 -2.39 -0.02 2.95 16 30 H 0.07 2.52 5.95 -2.38 -0.01 2.51 16 31 H 0.28 13.47 8.31 -92.71 -0.77 12.70 16 32 H 0.14 4.55 5.34 -2.91 -0.02 4.54 16 33 H 0.18 2.31 8.06 -2.91 -0.02 2.29 16 34 H 0.18 1.76 6.28 -2.91 -0.02 1.74 16 35 H 0.14 1.35 7.64 -2.39 -0.02 1.33 16 36 H 0.14 1.38 7.67 -2.39 -0.02 1.37 16 37 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.05 1.22 5.89 -2.39 -0.01 1.20 16 40 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 42 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 43 H 0.05 1.21 5.89 -2.38 -0.01 1.20 16 44 H 0.09 1.02 8.14 -2.39 -0.02 1.01 16 45 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.10 4.65 8.06 -2.91 -0.02 4.63 16 Total: -1.00 -82.19 375.84 6.67 -75.51 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 1.00 Total: 17.04 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: 6.35 Total: 7.00 kcal Atomic # 7 Polarization: -70.47 SS G_CDS: -1.76 Total: -72.23 kcal Atomic # 8 Polarization: -71.08 SS G_CDS: -0.94 Total: -72.02 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -82.19 6.67 -75.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597011499.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.885 kcal (2) G-P(sol) polarization free energy of solvation -82.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds