Wall clock time and date at job start Tue Mar 31 2020 18:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46922 * 2 1 4 4 C 1.53001 * 109.47124 * 119.99716 * 2 1 3 5 5 C 1.50694 * 109.47168 * 300.00314 * 4 2 1 6 6 H 1.08000 * 120.00563 * 359.97438 * 5 4 2 7 7 C 1.37885 * 119.99902 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99854 * 179.72538 * 7 5 4 10 10 H 1.48498 * 109.47200 * 59.99994 * 9 7 5 11 11 H 1.48498 * 109.46671 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47156 * 300.00008 * 9 7 5 13 13 C 1.53000 * 109.47415 * 240.00182 * 2 1 3 14 14 N 1.46497 * 109.47302 * 59.99834 * 13 2 1 15 15 C 1.34774 * 120.00288 * 180.02562 * 14 13 2 16 16 O 1.21280 * 119.99761 * 359.97438 * 15 14 13 17 17 C 1.50698 * 120.00338 * 179.97438 * 15 14 13 18 18 H 1.09003 * 109.70621 * 305.58696 * 17 15 14 19 19 C 1.53471 * 109.70398 * 66.20280 * 17 15 14 20 20 O 1.43178 * 108.23266 * 179.43484 * 19 17 15 21 21 C 1.36212 * 116.69626 * 313.74095 * 20 19 17 22 22 C 1.38678 * 119.33255 * 197.13131 * 21 20 19 23 23 C 1.38171 * 120.14397 * 180.30562 * 22 21 20 24 24 C 1.38699 * 120.05024 * 359.97438 * 23 22 21 25 25 O 1.35979 * 120.00678 * 179.97438 * 24 23 22 26 26 C 1.38613 * 119.99598 * 359.94442 * 24 23 22 27 27 C 1.38682 * 120.03185 * 359.97438 * 26 24 23 28 28 O 1.36114 * 119.35203 * 180.16877 * 27 26 24 29 29 H 1.08998 * 109.47544 * 299.99703 * 1 2 3 30 30 H 1.09005 * 109.47089 * 60.00233 * 1 2 3 31 31 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47156 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.47095 * 299.99872 * 3 2 1 34 34 H 1.09007 * 109.47356 * 59.99868 * 3 2 1 35 35 H 1.08998 * 109.46837 * 180.02562 * 4 2 1 36 36 H 1.09002 * 109.46926 * 60.00139 * 4 2 1 37 37 H 0.97001 * 119.99646 * 180.02562 * 8 7 5 38 38 H 1.09000 * 109.46966 * 179.97438 * 13 2 1 39 39 H 1.09002 * 109.46807 * 299.99967 * 13 2 1 40 40 H 0.97010 * 120.00015 * 0.02562 * 14 13 2 41 41 H 1.08995 * 109.71464 * 299.11985 * 19 17 15 42 42 H 1.09000 * 109.70801 * 59.75576 * 19 17 15 43 43 H 1.08006 * 119.93041 * 0.27659 * 22 21 20 44 44 H 1.08002 * 119.98172 * 179.97438 * 23 22 21 45 45 H 0.96691 * 114.00321 * 89.99161 * 25 24 23 46 46 H 1.08004 * 119.98401 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5376 -0.0108 2.4797 6 1 0.9170 0.8675 2.3806 7 6 1.8703 -0.4822 3.7320 8 7 2.6265 -1.5514 3.8527 9 14 1.2539 0.4029 5.2572 10 1 -0.2311 0.4099 5.2593 11 1 1.7468 -0.2986 6.4697 12 1 1.7554 1.8007 5.2551 13 6 2.0401 -0.7212 -1.2492 14 7 1.5518 -0.0306 -2.4454 15 6 1.8770 -0.4913 -3.6695 16 8 2.5743 -1.4774 -3.7808 17 6 1.3742 0.2187 -4.9000 18 1 0.2888 0.3082 -4.8550 19 6 2.0062 1.6146 -4.9864 20 8 1.5184 2.2546 -6.1707 21 6 1.5238 1.5132 -7.3134 22 6 1.4126 2.1530 -8.5388 23 6 1.4099 1.4169 -9.7081 24 6 1.5191 0.0350 -9.6592 25 8 1.5158 -0.6885 -10.8105 26 6 1.6322 -0.6083 -8.4366 27 6 1.6367 0.1290 -7.2621 28 8 1.7520 -0.5167 -6.0694 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 3.1300 -0.7208 1.2495 36 1 1.6767 -1.7489 1.2493 37 1 2.8602 -1.8832 4.7337 38 1 3.1301 -0.7208 -1.2494 39 1 1.6767 -1.7489 -1.2492 40 1 0.9943 0.7583 -2.3564 41 1 1.7263 2.1998 -4.1105 42 1 3.0912 1.5243 -5.0377 43 1 1.3274 3.2289 -8.5792 44 1 1.3227 1.9178 -10.6610 45 1 2.3944 -0.8298 -11.1887 46 1 1.7176 -1.6843 -8.3988 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601583952.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:54 Heat of formation + Delta-G solvation = -133.734202 kcal Electronic energy + Delta-G solvation = -28637.105829 eV Core-core repulsion = 24492.560194 eV Total energy + Delta-G solvation = -4144.545635 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.81504 -39.88915 -39.02460 -37.69424 -37.10334 -36.26024 -33.89174 -32.34858 -31.48505 -30.68283 -28.62247 -27.19436 -26.62132 -26.43729 -25.30939 -23.33866 -23.05489 -21.81342 -20.52470 -19.40847 -18.78164 -18.50621 -17.62760 -17.49791 -16.51926 -16.32680 -15.90109 -15.68520 -15.48521 -15.20929 -14.85195 -14.65549 -14.57518 -14.35574 -14.19909 -13.69445 -13.52241 -13.37841 -13.18753 -12.87568 -12.73365 -12.25982 -12.11684 -11.79295 -11.34037 -11.28660 -11.21407 -11.07461 -10.94306 -10.91401 -10.71088 -10.51300 -10.34365 -9.97936 -9.97490 -9.27452 -9.04846 -9.01538 -8.98434 -8.41041 -8.38298 -6.05107 -4.06964 0.76455 0.84904 2.21798 2.37868 2.65349 3.15441 3.28340 3.31126 3.34286 3.35528 3.77244 3.92372 4.18016 4.35283 4.39458 4.43472 4.62747 4.73546 4.87269 4.97368 5.03966 5.30071 5.33718 5.39112 5.49872 5.54635 5.62502 5.73553 5.94372 6.03359 6.03862 6.08655 6.13356 6.26107 6.33258 6.45481 6.53013 6.60717 6.93546 6.95279 6.97946 7.02002 7.25179 7.41300 7.56779 7.68119 7.92572 8.07525 8.33889 8.97401 9.56434 11.06150 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.035372 B = 0.002004 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.397991 B =13966.349556 C =14453.924519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.073 4.073 3 C -0.128 4.128 4 C 0.037 3.963 5 C -0.514 4.514 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.129 3.871 14 N -0.713 5.713 15 C 0.518 3.482 16 O -0.512 6.512 17 C 0.033 3.967 18 H 0.112 0.888 19 C 0.034 3.966 20 O -0.299 6.299 21 C 0.039 3.961 22 C -0.095 4.095 23 C -0.141 4.141 24 C 0.110 3.890 25 O -0.494 6.494 26 C -0.139 4.139 27 C 0.073 3.927 28 O -0.276 6.276 29 H 0.069 0.931 30 H 0.028 0.972 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.028 0.972 34 H 0.069 0.931 35 H 0.019 0.981 36 H 0.019 0.981 37 H 0.261 0.739 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.400 0.600 41 H 0.131 0.869 42 H 0.087 0.913 43 H 0.141 0.859 44 H 0.139 0.861 45 H 0.392 0.608 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.435 8.294 -25.564 26.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.073 4.073 3 C -0.186 4.186 4 C -0.001 4.001 5 C -0.552 4.552 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.007 3.993 14 N -0.367 5.367 15 C 0.300 3.700 16 O -0.387 6.387 17 C -0.027 4.027 18 H 0.129 0.871 19 C -0.042 4.042 20 O -0.213 6.213 21 C -0.006 4.006 22 C -0.114 4.114 23 C -0.160 4.160 24 C 0.066 3.934 25 O -0.304 6.304 26 C -0.158 4.158 27 C 0.027 3.973 28 O -0.189 6.189 29 H 0.088 0.912 30 H 0.047 0.953 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.047 0.953 34 H 0.088 0.912 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.236 0.764 41 H 0.149 0.851 42 H 0.106 0.894 43 H 0.159 0.841 44 H 0.157 0.843 45 H 0.248 0.752 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.428 7.423 -25.338 26.514 hybrid contribution -0.087 0.694 1.091 1.296 sum -2.515 8.117 -24.247 25.693 Atomic orbital electron populations 1.21782 0.95149 1.01331 1.00328 1.20931 0.95572 0.95908 0.94892 1.21781 1.00658 0.95792 1.00321 1.19087 0.96403 0.95260 0.89346 1.21121 1.31449 1.12136 0.90476 0.92285 1.25023 0.95275 0.95078 0.99130 1.69951 1.36708 1.22961 1.23638 0.86694 0.79116 0.79770 0.82614 1.20320 1.21386 1.20313 1.21753 0.99191 0.96203 0.82195 1.46107 1.53253 1.32089 1.05230 1.19535 0.81603 0.85162 0.83673 1.90773 1.36459 1.25227 1.86191 1.23018 1.01370 0.92495 0.85832 0.87060 1.23604 1.00074 0.92473 0.88066 1.86374 1.80865 1.39040 1.15035 1.18961 1.05150 0.88776 0.87711 1.20301 1.01962 1.00669 0.88437 1.21186 1.03393 0.92854 0.98555 1.17966 1.01131 0.89286 0.85064 1.84862 1.34230 1.74000 1.37297 1.20648 1.04792 1.01202 0.89153 1.18736 1.02608 0.89508 0.86432 1.86437 1.82282 1.38899 1.11302 0.91245 0.95286 0.93223 0.93213 0.95334 0.91231 0.96276 0.96268 0.92922 0.91343 0.91344 0.76446 0.85112 0.89441 0.84093 0.84341 0.75240 0.83911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 8.05 37.16 0.30 -1.79 16 2 C -0.07 -1.27 0.54 -154.51 -0.08 -1.36 16 3 C -0.13 -2.04 8.05 37.16 0.30 -1.74 16 4 C 0.04 0.86 4.04 -27.89 -0.11 0.74 16 5 C -0.51 -13.17 7.65 -34.44 -0.26 -13.43 16 6 H 0.06 1.45 5.68 -52.49 -0.30 1.15 16 7 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.89 -25.85 13.29 55.43 0.74 -25.11 16 9 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 13 C 0.13 2.08 4.56 -4.04 -0.02 2.06 16 14 N -0.71 -9.08 4.94 -60.30 -0.30 -9.38 16 15 C 0.52 7.24 7.19 -10.99 -0.08 7.16 16 16 O -0.51 -9.53 16.52 -14.16 -0.23 -9.76 16 17 C 0.03 0.38 3.44 -27.64 -0.10 0.28 16 18 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 19 C 0.03 0.31 6.53 37.40 0.24 0.56 16 20 O -0.30 -3.07 10.42 -33.20 -0.35 -3.42 16 21 C 0.04 0.41 6.49 -39.15 -0.25 0.16 16 22 C -0.10 -0.81 9.95 -39.44 -0.39 -1.20 16 23 C -0.14 -1.10 9.98 -39.44 -0.39 -1.49 16 24 C 0.11 0.98 6.70 -39.27 -0.26 0.72 16 25 O -0.49 -3.69 13.50 -19.67 -0.27 -3.96 16 26 C -0.14 -1.46 9.90 -39.28 -0.39 -1.85 16 27 C 0.07 0.86 6.49 -39.14 -0.25 0.61 16 28 O -0.28 -3.75 9.62 -47.07 -0.45 -4.20 16 29 H 0.07 1.23 6.62 -51.93 -0.34 0.89 16 30 H 0.03 0.37 6.86 -51.93 -0.36 0.01 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.03 0.35 6.86 -51.93 -0.36 -0.01 16 34 H 0.07 1.22 6.62 -51.93 -0.34 0.87 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.40 3.99 6.11 -40.82 -0.25 3.75 16 41 H 0.13 0.83 8.09 -51.93 -0.42 0.41 16 42 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 44 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 45 H 0.39 1.01 9.06 45.56 0.41 1.43 16 46 H 0.14 1.43 8.06 -52.48 -0.42 1.01 16 LS Contribution 377.69 15.07 5.69 5.69 Total: -1.00 -33.36 377.69 -7.78 -41.14 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -5.74 Total: 2.42 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: -1.85 Total: -9.14 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: 0.44 Total: -34.49 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -1.30 Total: -21.34 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.36 -7.78 -41.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601583952.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.590 kcal (2) G-P(sol) polarization free energy of solvation -33.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds