Wall clock time and date at job start Tue Mar 31 2020 18:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46922 * 2 1 4 4 C 1.53001 * 109.47124 * 119.99716 * 2 1 3 5 5 C 1.50694 * 109.47168 * 300.00314 * 4 2 1 6 6 H 1.08000 * 120.00563 * 359.97438 * 5 4 2 7 7 C 1.37885 * 119.99902 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99854 * 179.72538 * 7 5 4 10 10 H 1.48498 * 109.47200 * 59.99994 * 9 7 5 11 11 H 1.48498 * 109.46671 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47156 * 300.00008 * 9 7 5 13 13 C 1.53000 * 109.47415 * 240.00182 * 2 1 3 14 14 N 1.46497 * 109.47302 * 59.99834 * 13 2 1 15 15 C 1.34774 * 120.00288 * 180.02562 * 14 13 2 16 16 O 1.21280 * 119.99761 * 359.97438 * 15 14 13 17 17 C 1.50698 * 120.00338 * 179.97438 * 15 14 13 18 18 H 1.09003 * 109.70621 * 305.58696 * 17 15 14 19 19 C 1.53471 * 109.70398 * 66.20280 * 17 15 14 20 20 O 1.43178 * 108.23266 * 179.43484 * 19 17 15 21 21 C 1.36212 * 116.69626 * 313.74095 * 20 19 17 22 22 C 1.38678 * 119.33255 * 197.13131 * 21 20 19 23 23 C 1.38171 * 120.14397 * 180.30562 * 22 21 20 24 24 C 1.38699 * 120.05024 * 359.97438 * 23 22 21 25 25 O 1.35979 * 120.00678 * 179.97438 * 24 23 22 26 26 C 1.38613 * 119.99598 * 359.94442 * 24 23 22 27 27 C 1.38682 * 120.03185 * 359.97438 * 26 24 23 28 28 O 1.36114 * 119.35203 * 180.16877 * 27 26 24 29 29 H 1.08998 * 109.47544 * 299.99703 * 1 2 3 30 30 H 1.09005 * 109.47089 * 60.00233 * 1 2 3 31 31 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47156 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.47095 * 299.99872 * 3 2 1 34 34 H 1.09007 * 109.47356 * 59.99868 * 3 2 1 35 35 H 1.08998 * 109.46837 * 180.02562 * 4 2 1 36 36 H 1.09002 * 109.46926 * 60.00139 * 4 2 1 37 37 H 0.97001 * 119.99646 * 180.02562 * 8 7 5 38 38 H 1.09000 * 109.46966 * 179.97438 * 13 2 1 39 39 H 1.09002 * 109.46807 * 299.99967 * 13 2 1 40 40 H 0.97010 * 120.00015 * 0.02562 * 14 13 2 41 41 H 1.08995 * 109.71464 * 299.11985 * 19 17 15 42 42 H 1.09000 * 109.70801 * 59.75576 * 19 17 15 43 43 H 1.08006 * 119.93041 * 0.27659 * 22 21 20 44 44 H 1.08002 * 119.98172 * 179.97438 * 23 22 21 45 45 H 0.96691 * 114.00321 * 89.99161 * 25 24 23 46 46 H 1.08004 * 119.98401 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5376 -0.0108 2.4797 6 1 0.9170 0.8675 2.3806 7 6 1.8703 -0.4822 3.7320 8 7 2.6265 -1.5514 3.8527 9 14 1.2539 0.4029 5.2572 10 1 -0.2311 0.4099 5.2593 11 1 1.7468 -0.2986 6.4697 12 1 1.7554 1.8007 5.2551 13 6 2.0401 -0.7212 -1.2492 14 7 1.5518 -0.0306 -2.4454 15 6 1.8770 -0.4913 -3.6695 16 8 2.5743 -1.4774 -3.7808 17 6 1.3742 0.2187 -4.9000 18 1 0.2888 0.3082 -4.8550 19 6 2.0062 1.6146 -4.9864 20 8 1.5184 2.2546 -6.1707 21 6 1.5238 1.5132 -7.3134 22 6 1.4126 2.1530 -8.5388 23 6 1.4099 1.4169 -9.7081 24 6 1.5191 0.0350 -9.6592 25 8 1.5158 -0.6885 -10.8105 26 6 1.6322 -0.6083 -8.4366 27 6 1.6367 0.1290 -7.2621 28 8 1.7520 -0.5167 -6.0694 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 3.1300 -0.7208 1.2495 36 1 1.6767 -1.7489 1.2493 37 1 2.8602 -1.8832 4.7337 38 1 3.1301 -0.7208 -1.2494 39 1 1.6767 -1.7489 -1.2492 40 1 0.9943 0.7583 -2.3564 41 1 1.7263 2.1998 -4.1105 42 1 3.0912 1.5243 -5.0377 43 1 1.3274 3.2289 -8.5792 44 1 1.3227 1.9178 -10.6610 45 1 2.3944 -0.8298 -11.1887 46 1 1.7176 -1.6843 -8.3988 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601583952.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:53 Heat of formation + Delta-G solvation = -157.354791 kcal Electronic energy + Delta-G solvation = -28638.130095 eV Core-core repulsion = 24492.560194 eV Total energy + Delta-G solvation = -4145.569901 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.61647 -40.96915 -39.77772 -38.78815 -38.25175 -36.92876 -35.38757 -34.10652 -32.38625 -31.41741 -29.47462 -28.98036 -27.94506 -27.63771 -26.25674 -24.83648 -24.00500 -22.73252 -21.57496 -20.29907 -19.90345 -19.29722 -18.69945 -18.36440 -18.28405 -17.25873 -16.90693 -16.81071 -16.42908 -16.32066 -15.95103 -15.83373 -15.50997 -15.36375 -14.97972 -14.94802 -14.83587 -14.47037 -14.32660 -14.04005 -13.92241 -13.77901 -13.34057 -12.84044 -12.75970 -12.59430 -12.56407 -12.31148 -12.22483 -12.03091 -12.01273 -11.92592 -11.65175 -11.53468 -11.21197 -10.91700 -10.83204 -10.50030 -10.24864 -9.75189 -9.10140 -8.13450 -6.21104 0.08505 0.15059 1.22482 1.34646 1.43691 1.45152 1.52380 1.92772 2.37004 2.45761 2.49016 2.99453 3.21163 3.32442 3.39459 3.48082 3.61359 3.93407 4.00488 4.07347 4.08534 4.21899 4.22546 4.31332 4.37608 4.67387 4.70420 4.70934 4.76878 4.92332 4.97137 5.04865 5.06192 5.14688 5.29148 5.31389 5.42858 5.44735 5.52830 5.54742 5.57601 5.70417 5.81310 5.90783 6.19071 6.29443 6.37290 6.82645 6.94298 7.00053 7.46677 8.98652 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.035372 B = 0.002004 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.397991 B =13966.349556 C =14453.924519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.064 4.064 3 C -0.125 4.125 4 C 0.039 3.961 5 C -0.513 4.513 6 H 0.074 0.926 7 C -0.007 4.007 8 N -0.938 5.938 9 Si 0.958 3.042 10 H -0.267 1.267 11 H -0.293 1.293 12 H -0.266 1.266 13 C 0.142 3.858 14 N -0.694 5.694 15 C 0.522 3.478 16 O -0.565 6.565 17 C 0.038 3.962 18 H 0.136 0.864 19 C 0.037 3.963 20 O -0.299 6.299 21 C 0.024 3.976 22 C -0.091 4.091 23 C -0.133 4.133 24 C 0.114 3.886 25 O -0.502 6.502 26 C -0.158 4.158 27 C 0.050 3.950 28 O -0.308 6.308 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.036 0.964 32 H 0.039 0.961 33 H 0.076 0.924 34 H 0.056 0.944 35 H -0.013 1.013 36 H -0.015 1.015 37 H 0.259 0.741 38 H 0.053 0.947 39 H 0.049 0.951 40 H 0.418 0.582 41 H 0.166 0.834 42 H 0.080 0.920 43 H 0.165 0.835 44 H 0.168 0.832 45 H 0.413 0.587 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.124 11.682 -27.430 30.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.064 4.064 3 C -0.182 4.182 4 C 0.001 3.999 5 C -0.551 4.551 6 H 0.092 0.908 7 C -0.204 4.204 8 N -0.580 5.580 9 Si 0.784 3.216 10 H -0.192 1.192 11 H -0.220 1.220 12 H -0.191 1.191 13 C 0.018 3.982 14 N -0.349 5.349 15 C 0.307 3.693 16 O -0.443 6.443 17 C -0.022 4.022 18 H 0.153 0.847 19 C -0.039 4.039 20 O -0.213 6.213 21 C -0.021 4.021 22 C -0.109 4.109 23 C -0.151 4.151 24 C 0.069 3.931 25 O -0.316 6.316 26 C -0.177 4.177 27 C 0.005 3.995 28 O -0.222 6.222 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.005 0.995 36 H 0.003 0.997 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.258 0.742 41 H 0.183 0.817 42 H 0.098 0.902 43 H 0.183 0.817 44 H 0.185 0.815 45 H 0.273 0.727 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.140 10.863 -27.229 29.607 hybrid contribution 0.469 -0.420 1.529 1.654 sum -3.671 10.442 -25.700 27.983 Atomic orbital electron populations 1.21737 0.93516 1.01055 1.01922 1.20715 0.96748 0.96518 0.92441 1.21735 1.00126 0.94302 1.02021 1.18978 0.94370 0.94193 0.92348 1.21569 1.30423 1.12087 0.90992 0.90757 1.25964 0.95736 0.95901 1.02781 1.70117 1.38744 1.25000 1.24099 0.85600 0.78923 0.78779 0.78331 1.19183 1.21959 1.19069 1.21323 0.98234 0.95487 0.83159 1.45774 1.52986 1.32195 1.03899 1.20028 0.80376 0.84360 0.84551 1.90756 1.38881 1.27724 1.86958 1.23052 1.02606 0.92769 0.83791 0.84651 1.23744 0.99579 0.91555 0.89018 1.86370 1.80983 1.38869 1.15088 1.19191 1.05906 0.88368 0.88618 1.20650 1.00623 1.01904 0.87728 1.21504 1.01742 0.92257 0.99617 1.18055 1.00273 0.89924 0.84803 1.84806 1.36212 1.73912 1.36631 1.20784 1.05953 1.01102 0.89879 1.18948 1.04265 0.90318 0.85943 1.86370 1.83022 1.40413 1.12423 0.92471 0.90774 0.94527 0.94197 0.90545 0.92539 0.99467 0.99673 0.93246 0.92872 0.93297 0.74231 0.81675 0.90199 0.81711 0.81490 0.72734 0.84699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.83 8.05 71.98 0.58 -3.25 16 2 C -0.06 -2.21 0.54 -52.18 -0.03 -2.24 16 3 C -0.12 -3.70 8.05 71.98 0.58 -3.12 16 4 C 0.04 1.89 4.04 29.85 0.12 2.01 16 5 C -0.51 -26.57 7.65 25.60 0.20 -26.37 16 6 H 0.07 3.56 5.68 -2.91 -0.02 3.54 16 7 C -0.01 -0.38 5.46 84.66 0.46 0.08 16 8 N -0.94 -56.32 13.29 21.45 0.28 -56.03 16 9 Si 0.96 42.73 29.54 68.60 2.03 44.76 16 10 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 11 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 12 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 13 C 0.14 4.62 4.56 86.38 0.39 5.01 16 14 N -0.69 -16.41 4.94 -463.07 -2.29 -18.70 16 15 C 0.52 14.25 7.19 87.66 0.63 14.88 16 16 O -0.57 -21.69 16.52 15.82 0.26 -21.43 16 17 C 0.04 0.79 3.44 30.01 0.10 0.90 16 18 H 0.14 2.16 8.14 -2.39 -0.02 2.14 16 19 C 0.04 0.58 6.53 72.14 0.47 1.05 16 20 O -0.30 -5.34 10.42 -83.75 -0.87 -6.22 16 21 C 0.02 0.47 6.49 22.55 0.15 0.61 16 22 C -0.09 -1.28 9.95 22.36 0.22 -1.06 16 23 C -0.13 -1.67 9.98 22.36 0.22 -1.45 16 24 C 0.11 1.84 6.70 22.47 0.15 1.99 16 25 O -0.50 -6.58 13.50 -93.31 -1.26 -7.84 16 26 C -0.16 -3.31 9.90 22.47 0.22 -3.08 16 27 C 0.05 1.17 6.49 22.55 0.15 1.31 16 28 O -0.31 -8.43 9.62 -69.06 -0.66 -9.09 16 29 H 0.06 1.91 6.62 -2.39 -0.02 1.89 16 30 H 0.07 1.59 6.86 -2.38 -0.02 1.58 16 31 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.08 1.53 6.86 -2.39 -0.02 1.51 16 34 H 0.06 1.84 6.62 -2.38 -0.02 1.83 16 35 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 36 H -0.02 -0.83 8.14 -2.39 -0.02 -0.85 16 37 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 38 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.42 6.66 6.11 -92.70 -0.57 6.09 16 41 H 0.17 1.37 8.09 -2.39 -0.02 1.35 16 42 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 44 H 0.17 1.12 8.06 -2.91 -0.02 1.10 16 45 H 0.41 1.32 9.06 -74.06 -0.67 0.65 16 46 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -76.99 377.69 1.89 -75.09 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -0.21 Total: 12.18 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: 4.62 Total: -12.72 kcal Atomic # 7 Polarization: -72.73 SS G_CDS: -2.00 Total: -74.73 kcal Atomic # 8 Polarization: -42.04 SS G_CDS: -2.54 Total: -44.58 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -76.99 1.89 -75.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601583952.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.261 kcal (2) G-P(sol) polarization free energy of solvation -76.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds