Wall clock time and date at job start Tue Mar 31 2020 19:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47211 * 2 1 4 4 C 1.53003 * 109.46929 * 239.99977 * 2 1 3 5 5 O 1.45202 * 109.47582 * 120.00139 * 2 1 3 6 6 C 1.34225 * 116.99739 * 59.99628 * 5 2 1 7 7 O 1.20831 * 120.00074 * 0.02562 * 6 5 2 8 8 C 1.50705 * 120.00166 * 180.02562 * 6 5 2 9 9 H 1.08999 * 109.46726 * 59.99743 * 8 6 5 10 10 C 1.53006 * 109.46962 * 300.00358 * 8 6 5 11 11 C 1.50701 * 109.46890 * 174.99673 * 10 8 6 12 12 C 1.38268 * 119.94358 * 270.25438 * 11 10 8 13 13 C 1.38146 * 120.05503 * 180.25891 * 12 11 10 14 14 C 1.38733 * 119.93855 * 359.46751 * 13 12 11 15 15 O 1.35909 * 120.04995 * 180.29727 * 14 13 12 16 16 C 1.38727 * 119.89446 * 0.27719 * 14 13 12 17 17 C 1.38151 * 119.94271 * 0.02562 * 16 14 13 18 18 N 1.46495 * 109.47356 * 180.02562 * 8 6 5 19 19 C 1.34775 * 120.00047 * 274.99941 * 18 8 6 20 20 O 1.21692 * 119.99751 * 0.02562 * 19 18 8 21 21 C 1.46372 * 120.00303 * 179.97438 * 19 18 8 22 22 H 1.08002 * 119.99593 * 353.94585 * 21 19 18 23 23 C 1.40043 * 120.00408 * 173.93811 * 21 19 18 24 24 N 1.30678 * 119.99849 * 6.15267 * 23 21 19 25 25 Si 1.86801 * 120.00303 * 186.15237 * 23 21 19 26 26 H 1.48494 * 109.47103 * 94.98495 * 25 23 21 27 27 H 1.48500 * 109.47259 * 214.98600 * 25 23 21 28 28 H 1.48500 * 109.46931 * 334.98258 * 25 23 21 29 29 H 1.08996 * 109.46752 * 299.99814 * 1 2 3 30 30 H 1.09000 * 109.47182 * 59.99639 * 1 2 3 31 31 H 1.08998 * 109.46807 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47561 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47342 * 300.00263 * 3 2 1 34 34 H 1.08996 * 109.47472 * 60.00002 * 3 2 1 35 35 H 1.08991 * 109.47407 * 300.00017 * 4 2 1 36 36 H 1.09000 * 109.46876 * 60.00196 * 4 2 1 37 37 H 1.09007 * 109.46933 * 179.97438 * 4 2 1 38 38 H 1.08998 * 109.47247 * 54.99519 * 10 8 6 39 39 H 1.08997 * 109.46747 * 294.99521 * 10 8 6 40 40 H 1.08001 * 119.97399 * 0.02562 * 12 11 10 41 41 H 1.07995 * 120.02577 * 179.74128 * 13 12 11 42 42 H 0.96708 * 113.99562 * 90.00047 * 15 14 13 43 43 H 1.07999 * 120.03336 * 180.02562 * 16 14 13 44 44 H 1.07993 * 119.97198 * 180.02562 * 17 16 14 45 45 H 0.96995 * 119.99953 * 95.00054 * 18 8 6 46 46 H 0.96996 * 120.00079 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6534 -1.9684 1.3378 7 8 0.9567 -2.5027 0.5078 8 6 2.1175 -2.7435 2.5441 9 1 1.7534 -2.2584 3.4497 10 6 3.6469 -2.7839 2.5669 11 6 4.1128 -3.4516 3.8350 12 6 4.3410 -2.6950 4.9696 13 6 4.7733 -3.3039 6.1319 14 6 4.9678 -4.6772 6.1630 15 8 5.3872 -5.2794 7.3069 16 6 4.7331 -5.4348 5.0248 17 6 4.3069 -4.8202 3.8632 18 7 1.5943 -4.1102 2.4773 19 6 0.3577 -4.3817 2.9394 20 8 -0.3244 -3.4914 3.4117 21 6 -0.1654 -5.7471 2.8722 22 1 0.3977 -6.5167 2.3652 23 6 -1.3958 -6.0556 3.4655 24 7 -2.1332 -5.1038 3.9734 25 14 -1.9831 -7.8277 3.5309 26 1 -1.6052 -8.4266 4.8361 27 1 -3.4597 -7.8659 3.3777 28 1 -1.3513 -8.5994 2.4306 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8899 35 1 1.6767 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1392 37 1 3.1300 -0.7209 -1.2495 38 1 4.0379 -1.7673 2.5266 39 1 4.0082 -3.3465 1.7061 40 1 4.1848 -1.6266 4.9462 41 1 4.9554 -2.7120 7.0166 42 1 4.6684 -5.5670 7.8864 43 1 4.8834 -6.5040 5.0466 44 1 4.1236 -5.4095 2.9770 45 1 2.1378 -4.8197 2.1005 46 1 -2.9856 -5.3174 4.3840 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602173892.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:43 Heat of formation + Delta-G solvation = -149.996984 kcal Electronic energy + Delta-G solvation = -29811.540882 eV Core-core repulsion = 25666.290040 eV Total energy + Delta-G solvation = -4145.250843 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.50879 -39.62799 -37.87589 -36.74982 -36.24031 -34.26963 -33.60588 -32.44574 -31.05929 -30.79637 -28.35286 -27.34307 -27.22819 -26.04146 -24.43693 -22.70086 -21.82322 -21.02032 -19.82993 -19.05400 -18.30915 -17.41243 -16.78056 -16.31406 -15.85257 -15.68626 -15.47105 -15.24141 -15.09459 -14.53152 -14.21704 -14.03828 -13.90275 -13.54679 -13.40617 -13.31836 -12.60475 -12.49755 -12.43033 -12.21167 -12.09906 -11.93613 -11.77557 -11.70940 -11.64909 -11.40922 -11.32619 -11.09942 -11.05931 -10.97196 -10.82567 -10.47359 -10.34592 -10.23573 -10.08365 -9.53445 -8.86759 -8.82719 -8.32007 -7.76768 -7.63763 -6.21633 -4.64776 1.33693 1.51769 2.81352 3.00781 3.13510 3.20427 3.24066 3.74091 4.08364 4.35053 4.57113 4.61505 4.83756 4.85609 4.87783 4.96450 5.03518 5.09002 5.17595 5.33183 5.40827 5.50942 5.51640 5.62357 5.68375 5.73089 5.82400 5.82570 5.85819 5.95280 5.98489 6.03941 6.08020 6.13026 6.19910 6.37273 6.42874 6.54959 6.55673 6.74249 6.92717 6.95752 7.42497 7.70888 7.77267 7.93908 8.27546 8.43841 9.01181 9.42769 10.56269 10.74365 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.006815 B = 0.005304 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4107.421083 B = 5277.293561 C = 8641.758715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.116 3.884 3 C -0.138 4.138 4 C -0.181 4.181 5 O -0.359 6.359 6 C 0.447 3.553 7 O -0.483 6.483 8 C 0.174 3.826 9 H 0.114 0.886 10 C -0.081 4.081 11 C -0.079 4.079 12 C -0.097 4.097 13 C -0.145 4.145 14 C 0.096 3.904 15 O -0.505 6.505 16 C -0.140 4.140 17 C -0.083 4.083 18 N -0.736 5.736 19 C 0.562 3.438 20 O -0.577 6.577 21 C -0.539 4.539 22 H 0.068 0.932 23 C 0.089 3.911 24 N -0.766 5.766 25 Si 0.906 3.094 26 H -0.273 1.273 27 H -0.279 1.279 28 H -0.264 1.264 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.127 0.873 41 H 0.125 0.875 42 H 0.389 0.611 43 H 0.126 0.874 44 H 0.126 0.874 45 H 0.384 0.616 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.254 6.578 -2.283 14.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.079 3.921 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.277 6.277 6 C 0.287 3.713 7 O -0.368 6.368 8 C 0.064 3.936 9 H 0.131 0.869 10 C -0.119 4.119 11 C -0.079 4.079 12 C -0.115 4.115 13 C -0.164 4.164 14 C 0.052 3.948 15 O -0.315 6.315 16 C -0.159 4.159 17 C -0.101 4.101 18 N -0.391 5.391 19 C 0.367 3.633 20 O -0.459 6.459 21 C -0.576 4.576 22 H 0.086 0.914 23 C -0.131 4.131 24 N -0.394 5.394 25 Si 0.731 3.269 26 H -0.198 1.198 27 H -0.205 1.205 28 H -0.188 1.188 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.103 0.897 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.111 0.889 39 H 0.097 0.903 40 H 0.145 0.855 41 H 0.143 0.857 42 H 0.245 0.755 43 H 0.144 0.856 44 H 0.144 0.856 45 H 0.217 0.783 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 12.884 7.252 -2.348 14.970 hybrid contribution -0.779 -1.285 -0.067 1.504 sum 12.105 5.968 -2.415 13.711 Atomic orbital electron populations 1.22472 0.94161 1.05227 1.02152 1.22053 0.94435 0.91998 0.83597 1.21823 1.01812 0.93155 1.02727 1.22467 1.01212 1.03435 0.96663 1.86554 1.70102 1.26352 1.44689 1.24909 0.77954 0.80120 0.88341 1.90556 1.33758 1.69886 1.42588 1.20080 0.92505 0.86931 0.94080 0.86866 1.20810 0.93257 1.02092 0.95698 1.19664 0.99254 0.93842 0.95175 1.20910 0.98575 1.00029 0.91980 1.21318 1.01688 0.94303 0.99042 1.18457 0.98771 0.90811 0.86759 1.84777 1.36356 1.78985 1.31366 1.21363 1.01005 1.00257 0.93253 1.20910 0.97371 0.93894 0.97973 1.46085 1.19619 1.04897 1.68540 1.18207 0.78207 0.90002 0.76882 1.90605 1.57365 1.48218 1.49730 1.20797 1.05027 0.93760 1.37971 0.91376 1.25682 0.95800 0.98188 0.93448 1.70027 1.09443 1.32637 1.27339 0.86377 0.78254 0.83121 0.79139 1.19817 1.20465 1.18846 0.92048 0.91687 0.89446 0.91745 0.90842 0.91586 0.89708 0.91566 0.92315 0.88938 0.90279 0.85540 0.85738 0.75504 0.85571 0.85569 0.78304 0.92138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.83 8.37 37.16 0.31 -2.52 16 2 C 0.12 1.64 1.13 -90.62 -0.10 1.53 16 3 C -0.14 -1.45 8.85 37.16 0.33 -1.12 16 4 C -0.18 -2.37 8.37 37.16 0.31 -2.06 16 5 O -0.36 -5.90 9.70 -39.24 -0.38 -6.28 16 6 C 0.45 8.58 6.60 36.01 0.24 8.82 16 7 O -0.48 -10.69 11.82 -18.75 -0.22 -10.91 16 8 C 0.17 3.22 2.47 -69.08 -0.17 3.05 16 9 H 0.11 2.34 7.58 -51.93 -0.39 1.94 16 10 C -0.08 -1.09 4.85 -27.88 -0.14 -1.23 16 11 C -0.08 -1.10 4.95 -104.60 -0.52 -1.62 16 12 C -0.10 -1.28 9.69 -39.60 -0.38 -1.67 16 13 C -0.15 -1.90 9.99 -39.43 -0.39 -2.30 16 14 C 0.10 1.31 6.70 -39.22 -0.26 1.05 16 15 O -0.50 -6.14 13.50 -19.45 -0.26 -6.40 16 16 C -0.14 -1.92 9.99 -39.43 -0.39 -2.32 16 17 C -0.08 -1.16 9.09 -39.60 -0.36 -1.52 16 18 N -0.74 -15.86 4.05 -56.34 -0.23 -16.09 16 19 C 0.56 15.65 7.57 -12.99 -0.10 15.55 16 20 O -0.58 -18.35 14.71 5.20 0.08 -18.27 16 21 C -0.54 -15.08 9.53 -35.63 -0.34 -15.42 16 22 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 23 C 0.09 2.47 5.49 -17.37 -0.10 2.37 16 24 N -0.77 -22.91 11.85 55.55 0.66 -22.25 16 25 Si 0.91 20.14 29.56 -169.99 -5.03 15.11 16 26 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 27 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 28 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.09 1.69 5.89 -51.93 -0.31 1.38 16 32 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 1.36 5.89 -51.93 -0.31 1.05 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 38 H 0.09 1.08 7.94 -51.93 -0.41 0.66 16 39 H 0.08 0.97 8.08 -51.93 -0.42 0.55 16 40 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 41 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 42 H 0.39 3.13 9.06 45.56 0.41 3.54 16 43 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 44 H 0.13 1.58 7.57 -52.49 -0.40 1.19 16 45 H 0.38 7.33 7.80 -40.82 -0.32 7.01 16 46 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 LS Contribution 387.29 15.07 5.84 5.84 Total: -1.00 -36.75 387.29 -7.53 -44.27 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: -5.91 Total: 14.39 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -2.07 Total: 0.59 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 0.43 Total: -38.34 kcal Atomic # 8 Polarization: -41.07 SS G_CDS: -0.79 Total: -41.86 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.03 Total: 15.11 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.75 -7.53 -44.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602173892.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.723 kcal (2) G-P(sol) polarization free energy of solvation -36.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds