Wall clock time and date at job start Tue Mar 31 2020 19:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47211 * 2 1 4 4 C 1.53003 * 109.46929 * 239.99977 * 2 1 3 5 5 O 1.45202 * 109.47582 * 120.00139 * 2 1 3 6 6 C 1.34225 * 116.99739 * 59.99628 * 5 2 1 7 7 O 1.20831 * 120.00074 * 0.02562 * 6 5 2 8 8 C 1.50705 * 120.00166 * 180.02562 * 6 5 2 9 9 H 1.08999 * 109.46726 * 59.99743 * 8 6 5 10 10 C 1.53006 * 109.46962 * 300.00358 * 8 6 5 11 11 C 1.50701 * 109.46890 * 174.99673 * 10 8 6 12 12 C 1.38268 * 119.94358 * 270.25438 * 11 10 8 13 13 C 1.38146 * 120.05503 * 180.25891 * 12 11 10 14 14 C 1.38733 * 119.93855 * 359.46751 * 13 12 11 15 15 O 1.35909 * 120.04995 * 180.29727 * 14 13 12 16 16 C 1.38727 * 119.89446 * 0.27719 * 14 13 12 17 17 C 1.38151 * 119.94271 * 0.02562 * 16 14 13 18 18 N 1.46495 * 109.47356 * 180.02562 * 8 6 5 19 19 C 1.34775 * 120.00047 * 274.99941 * 18 8 6 20 20 O 1.21692 * 119.99751 * 0.02562 * 19 18 8 21 21 C 1.46372 * 120.00303 * 179.97438 * 19 18 8 22 22 H 1.08002 * 119.99593 * 353.94585 * 21 19 18 23 23 C 1.40043 * 120.00408 * 173.93811 * 21 19 18 24 24 N 1.30678 * 119.99849 * 6.15267 * 23 21 19 25 25 Si 1.86801 * 120.00303 * 186.15237 * 23 21 19 26 26 H 1.48494 * 109.47103 * 94.98495 * 25 23 21 27 27 H 1.48500 * 109.47259 * 214.98600 * 25 23 21 28 28 H 1.48500 * 109.46931 * 334.98258 * 25 23 21 29 29 H 1.08996 * 109.46752 * 299.99814 * 1 2 3 30 30 H 1.09000 * 109.47182 * 59.99639 * 1 2 3 31 31 H 1.08998 * 109.46807 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47561 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47342 * 300.00263 * 3 2 1 34 34 H 1.08996 * 109.47472 * 60.00002 * 3 2 1 35 35 H 1.08991 * 109.47407 * 300.00017 * 4 2 1 36 36 H 1.09000 * 109.46876 * 60.00196 * 4 2 1 37 37 H 1.09007 * 109.46933 * 179.97438 * 4 2 1 38 38 H 1.08998 * 109.47247 * 54.99519 * 10 8 6 39 39 H 1.08997 * 109.46747 * 294.99521 * 10 8 6 40 40 H 1.08001 * 119.97399 * 0.02562 * 12 11 10 41 41 H 1.07995 * 120.02577 * 179.74128 * 13 12 11 42 42 H 0.96708 * 113.99562 * 90.00047 * 15 14 13 43 43 H 1.07999 * 120.03336 * 180.02562 * 16 14 13 44 44 H 1.07993 * 119.97198 * 180.02562 * 17 16 14 45 45 H 0.96995 * 119.99953 * 95.00054 * 18 8 6 46 46 H 0.96996 * 120.00079 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6534 -1.9684 1.3378 7 8 0.9567 -2.5027 0.5078 8 6 2.1175 -2.7435 2.5441 9 1 1.7534 -2.2584 3.4497 10 6 3.6469 -2.7839 2.5669 11 6 4.1128 -3.4516 3.8350 12 6 4.3410 -2.6950 4.9696 13 6 4.7733 -3.3039 6.1319 14 6 4.9678 -4.6772 6.1630 15 8 5.3872 -5.2794 7.3069 16 6 4.7331 -5.4348 5.0248 17 6 4.3069 -4.8202 3.8632 18 7 1.5943 -4.1102 2.4773 19 6 0.3577 -4.3817 2.9394 20 8 -0.3244 -3.4914 3.4117 21 6 -0.1654 -5.7471 2.8722 22 1 0.3977 -6.5167 2.3652 23 6 -1.3958 -6.0556 3.4655 24 7 -2.1332 -5.1038 3.9734 25 14 -1.9831 -7.8277 3.5309 26 1 -1.6052 -8.4266 4.8361 27 1 -3.4597 -7.8659 3.3777 28 1 -1.3513 -8.5994 2.4306 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8899 35 1 1.6767 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1392 37 1 3.1300 -0.7209 -1.2495 38 1 4.0379 -1.7673 2.5266 39 1 4.0082 -3.3465 1.7061 40 1 4.1848 -1.6266 4.9462 41 1 4.9554 -2.7120 7.0166 42 1 4.6684 -5.5670 7.8864 43 1 4.8834 -6.5040 5.0466 44 1 4.1236 -5.4095 2.9770 45 1 2.1378 -4.8197 2.1005 46 1 -2.9856 -5.3174 4.3840 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602173892.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:42 Heat of formation + Delta-G solvation = -175.789480 kcal Electronic energy + Delta-G solvation = -29812.659329 eV Core-core repulsion = 25666.290040 eV Total energy + Delta-G solvation = -4146.369289 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.93682 -40.68535 -39.53618 -37.98477 -37.78601 -35.79651 -34.92960 -34.52578 -32.54368 -31.86045 -29.81398 -28.40489 -28.27508 -27.99022 -25.71425 -23.74770 -23.26598 -22.21413 -21.58362 -20.48669 -19.33106 -19.26838 -18.25642 -17.65406 -17.54826 -16.98936 -16.76467 -16.60142 -16.27921 -15.95587 -15.86838 -15.35089 -15.26442 -14.63730 -14.58777 -14.38109 -14.33387 -14.18308 -13.79582 -13.33366 -13.25785 -13.15343 -13.02707 -12.92134 -12.83447 -12.81633 -12.78034 -12.59642 -12.45747 -12.41595 -12.27092 -12.05256 -12.02197 -11.35449 -11.32885 -11.05407 -10.91065 -9.90382 -9.87474 -9.62718 -9.35901 -8.30614 -6.84386 0.28663 0.48228 1.30009 1.38403 1.38967 1.54856 1.67517 2.23439 2.51258 2.70450 2.98460 3.39196 3.55993 3.72765 3.77216 3.80018 3.89658 3.92562 3.96788 4.10997 4.14339 4.25037 4.49951 4.52437 4.55654 4.58526 4.74166 4.79589 4.81829 4.84619 4.88011 4.91550 5.03584 5.12181 5.14308 5.25539 5.32212 5.33208 5.39115 5.51726 5.57995 5.68215 5.86329 5.95477 6.06444 6.22578 6.85482 6.87213 6.94852 7.47548 8.47806 8.66659 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.006815 B = 0.005304 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4107.421083 B = 5277.293561 C = 8641.758715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.103 3.897 3 C -0.131 4.131 4 C -0.175 4.175 5 O -0.354 6.354 6 C 0.449 3.551 7 O -0.518 6.518 8 C 0.173 3.827 9 H 0.089 0.911 10 C -0.065 4.065 11 C -0.095 4.095 12 C -0.103 4.103 13 C -0.154 4.154 14 C 0.090 3.910 15 O -0.511 6.511 16 C -0.155 4.155 17 C -0.094 4.094 18 N -0.724 5.724 19 C 0.551 3.449 20 O -0.628 6.628 21 C -0.568 4.568 22 H 0.085 0.915 23 C 0.032 3.968 24 N -0.820 5.820 25 Si 0.993 3.007 26 H -0.260 1.260 27 H -0.275 1.275 28 H -0.250 1.250 29 H 0.052 0.948 30 H 0.095 0.905 31 H 0.042 0.958 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.064 0.936 35 H 0.050 0.950 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.117 0.883 39 H 0.096 0.904 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.407 0.593 43 H 0.137 0.863 44 H 0.135 0.865 45 H 0.397 0.603 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.938 6.555 -2.981 16.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.068 3.932 3 C -0.188 4.188 4 C -0.233 4.233 5 O -0.271 6.271 6 C 0.290 3.710 7 O -0.406 6.406 8 C 0.064 3.936 9 H 0.107 0.893 10 C -0.102 4.102 11 C -0.095 4.095 12 C -0.121 4.121 13 C -0.173 4.173 14 C 0.046 3.954 15 O -0.323 6.323 16 C -0.173 4.173 17 C -0.112 4.112 18 N -0.378 5.378 19 C 0.356 3.644 20 O -0.514 6.514 21 C -0.605 4.605 22 H 0.103 0.897 23 C -0.183 4.183 24 N -0.450 5.450 25 Si 0.813 3.187 26 H -0.184 1.184 27 H -0.200 1.200 28 H -0.173 1.173 29 H 0.071 0.929 30 H 0.113 0.887 31 H 0.061 0.939 32 H 0.099 0.901 33 H 0.118 0.882 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.109 0.891 37 H 0.094 0.906 38 H 0.136 0.864 39 H 0.114 0.886 40 H 0.162 0.838 41 H 0.160 0.840 42 H 0.265 0.735 43 H 0.155 0.845 44 H 0.153 0.847 45 H 0.232 0.768 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 14.637 7.240 -3.057 16.613 hybrid contribution -1.264 -1.176 0.148 1.733 sum 13.372 6.063 -2.910 14.968 Atomic orbital electron populations 1.22455 0.95667 1.02521 1.03266 1.22503 0.93534 0.94126 0.83087 1.21844 1.02818 0.90087 1.04015 1.22416 1.02244 1.01528 0.97071 1.86530 1.69644 1.24828 1.46062 1.24872 0.77208 0.80973 0.87911 1.90564 1.35174 1.70850 1.43974 1.20222 0.95687 0.84839 0.92840 0.89349 1.20759 0.89059 1.03988 0.96420 1.19764 1.00094 0.94081 0.95556 1.21200 0.97994 1.01053 0.91809 1.21576 1.01538 0.94449 0.99705 1.18637 0.98334 0.91220 0.87214 1.84725 1.37471 1.78930 1.31221 1.21576 1.01353 1.01015 0.93375 1.21123 0.97425 0.94177 0.98514 1.45604 1.17992 1.06874 1.67313 1.18469 0.79551 0.89820 0.76565 1.90557 1.59369 1.49521 1.52001 1.21347 1.06025 0.94471 1.38640 0.89668 1.26904 0.95554 1.03682 0.92209 1.70193 1.10240 1.35895 1.28655 0.85075 0.77624 0.76060 0.79978 1.18429 1.20012 1.17299 0.92873 0.88655 0.93923 0.90143 0.88212 0.91679 0.93074 0.89087 0.90553 0.86446 0.88601 0.83824 0.84049 0.73469 0.84513 0.84735 0.76810 0.91696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.67 8.37 71.98 0.60 -5.07 16 2 C 0.10 2.79 1.13 -10.79 -0.01 2.78 16 3 C -0.13 -2.35 8.85 71.98 0.64 -1.71 16 4 C -0.18 -4.34 8.37 71.98 0.60 -3.73 16 5 O -0.35 -11.47 9.70 -51.37 -0.50 -11.97 16 6 C 0.45 17.64 6.60 71.24 0.47 18.11 16 7 O -0.52 -23.90 11.82 21.95 0.26 -23.64 16 8 C 0.17 6.53 2.47 44.25 0.11 6.64 16 9 H 0.09 3.82 7.58 -2.39 -0.02 3.80 16 10 C -0.06 -1.68 4.85 29.85 0.14 -1.54 16 11 C -0.09 -2.56 4.95 -19.85 -0.10 -2.66 16 12 C -0.10 -2.62 9.69 22.25 0.22 -2.40 16 13 C -0.15 -3.88 9.99 22.37 0.22 -3.66 16 14 C 0.09 2.37 6.70 22.51 0.15 2.53 16 15 O -0.51 -11.78 13.50 -92.53 -1.25 -13.02 16 16 C -0.15 -4.13 9.99 22.37 0.22 -3.91 16 17 C -0.09 -2.56 9.09 22.25 0.20 -2.36 16 18 N -0.72 -32.00 4.05 -450.39 -1.83 -33.82 16 19 C 0.55 31.86 7.57 86.36 0.65 32.51 16 20 O -0.63 -42.02 14.71 -4.32 -0.06 -42.08 16 21 C -0.57 -32.45 9.53 24.83 0.24 -32.21 16 22 H 0.09 4.39 7.85 -2.91 -0.02 4.37 16 23 C 0.03 1.78 5.49 85.30 0.47 2.25 16 24 N -0.82 -50.77 11.85 21.83 0.26 -50.51 16 25 Si 0.99 41.48 29.56 68.60 2.03 43.51 16 26 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 27 H -0.28 -11.19 7.11 99.48 0.71 -10.49 16 28 H -0.25 -9.73 7.11 99.48 0.71 -9.03 16 29 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.04 1.72 5.89 -2.39 -0.01 1.71 16 32 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.05 1.64 5.89 -2.39 -0.01 1.63 16 36 H 0.09 1.76 8.14 -2.39 -0.02 1.75 16 37 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 38 H 0.12 2.48 7.94 -2.39 -0.02 2.46 16 39 H 0.10 2.18 8.08 -2.39 -0.02 2.16 16 40 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 41 H 0.14 2.97 8.06 -2.91 -0.02 2.94 16 42 H 0.41 6.02 9.06 -74.05 -0.67 5.35 16 43 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 44 H 0.13 3.28 7.57 -2.91 -0.02 3.26 16 45 H 0.40 15.31 7.80 -92.71 -0.72 14.59 16 46 H 0.27 15.35 8.29 -92.71 -0.77 14.58 16 Total: -1.00 -84.38 387.29 3.36 -81.01 By element: Atomic # 1 Polarization: 45.33 SS G_CDS: -0.38 Total: 44.96 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: 4.83 Total: 5.57 kcal Atomic # 7 Polarization: -82.76 SS G_CDS: -1.57 Total: -84.33 kcal Atomic # 8 Polarization: -89.17 SS G_CDS: -1.55 Total: -90.72 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Total: -84.38 3.36 -81.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602173892.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.775 kcal (2) G-P(sol) polarization free energy of solvation -84.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds