Wall clock time and date at job start Tue Mar 31 2020 18:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34225 * 117.00353 * 2 1 4 4 O 1.20826 * 119.99716 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00174 * 179.97438 * 3 2 1 6 6 N 1.46503 * 109.46818 * 180.02562 * 5 3 2 7 7 C 1.37099 * 119.99751 * 269.99667 * 6 5 3 8 8 H 1.08000 * 119.99811 * 198.18247 * 7 6 5 9 9 C 1.38951 * 120.00258 * 18.17960 * 7 6 5 10 10 N 1.31409 * 119.99869 * 3.58155 * 9 7 6 11 11 Si 1.86799 * 120.00327 * 183.57084 * 9 7 6 12 12 H 1.48495 * 109.46890 * 90.00285 * 11 9 7 13 13 H 1.48496 * 109.47490 * 210.00763 * 11 9 7 14 14 H 1.48501 * 109.47004 * 330.00520 * 11 9 7 15 15 C 1.34778 * 120.00322 * 90.00181 * 6 5 3 16 16 O 1.21295 * 119.99684 * 355.16368 * 15 6 5 17 17 C 1.50701 * 119.99990 * 175.16470 * 15 6 5 18 18 O 1.42902 * 109.46617 * 184.88748 * 17 15 6 19 19 C 1.35902 * 116.99515 * 184.82482 * 18 17 15 20 20 C 1.38754 * 120.05824 * 354.66798 * 19 18 17 21 21 C 1.38121 * 119.94234 * 179.97438 * 20 19 18 22 22 C 1.38285 * 120.05903 * 0.02562 * 21 20 19 23 23 C 1.38247 * 120.11000 * 359.97438 * 22 21 20 24 24 C 1.38161 * 120.05396 * 359.97438 * 23 22 21 25 25 C 1.50701 * 120.02691 * 180.02562 * 24 23 22 26 26 C 1.53008 * 109.46973 * 299.99828 * 25 24 23 27 27 C 1.52998 * 109.47400 * 59.99676 * 25 24 23 28 28 H 1.09001 * 109.47105 * 300.00332 * 1 2 3 29 29 H 1.08997 * 109.46482 * 60.00098 * 1 2 3 30 30 H 1.09000 * 109.47256 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47132 * 60.00313 * 5 3 2 32 32 H 1.08998 * 109.46993 * 299.99830 * 5 3 2 33 33 H 0.97001 * 120.00402 * 185.00343 * 10 9 7 34 34 H 1.08990 * 109.47202 * 64.88616 * 17 15 6 35 35 H 1.09001 * 109.47081 * 304.88173 * 17 15 6 36 36 H 1.07996 * 120.02491 * 0.25405 * 20 19 18 37 37 H 1.08001 * 119.96595 * 179.97438 * 21 20 19 38 38 H 1.07995 * 119.94475 * 179.97438 * 22 21 20 39 39 H 1.07998 * 119.97084 * 180.02562 * 23 22 21 40 40 H 1.08993 * 109.47544 * 179.97438 * 25 24 23 41 41 H 1.08993 * 109.47509 * 180.02562 * 26 25 24 42 42 H 1.08999 * 109.46787 * 299.99855 * 26 25 24 43 43 H 1.09002 * 109.46765 * 59.99676 * 26 25 24 44 44 H 1.08997 * 109.47359 * 59.99985 * 27 25 24 45 45 H 1.09002 * 109.47152 * 180.02562 * 27 25 24 46 46 H 1.09007 * 109.46888 * 300.00010 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 0.0006 6 7 3.9818 2.6797 0.0011 7 6 4.1766 3.3372 -1.1860 8 1 4.7513 4.2514 -1.2089 9 6 3.6349 2.8276 -2.3597 10 7 2.8773 1.7545 -2.3219 11 14 3.9832 3.6679 -3.9912 12 1 5.2077 3.0853 -4.5965 13 1 2.8330 3.4649 -4.9082 14 1 4.1859 5.1216 -3.7659 15 6 4.1725 3.3257 1.1685 16 8 3.9161 2.7720 2.2168 17 6 4.7041 4.7358 1.1713 18 8 4.9253 5.1587 2.5182 19 6 5.3110 6.4485 2.7044 20 6 5.5804 7.2581 1.6103 21 6 5.9717 8.5688 1.8023 22 6 6.0956 9.0741 3.0835 23 6 5.8278 8.2694 4.1753 24 6 5.4350 6.9580 3.9886 25 6 5.1427 6.0815 5.1791 26 6 6.3952 5.9713 6.0510 27 6 4.0044 6.6951 5.9969 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.9565 0.7805 -0.8891 32 1 3.9558 0.7808 0.8908 33 1 2.5587 1.3564 -3.1471 34 1 3.9800 5.3980 0.6968 35 1 5.6440 4.7708 0.6205 36 1 5.4797 6.8652 0.6094 37 1 6.1819 9.1992 0.9509 38 1 6.4021 10.0990 3.2315 39 1 5.9249 8.6664 5.1749 40 1 4.8495 5.0892 4.8366 41 1 6.1840 5.3370 6.9119 42 1 7.2061 5.5341 5.4684 43 1 6.6879 6.9638 6.3936 44 1 3.1122 6.7737 5.3759 45 1 3.7933 6.0613 6.8583 46 1 4.2972 7.6876 6.3396 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609991447.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:47 Heat of formation + Delta-G solvation = -124.968248 kcal Electronic energy + Delta-G solvation = -29613.573038 eV Core-core repulsion = 25469.407523 eV Total energy + Delta-G solvation = -4144.165515 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.20428 -39.42987 -38.39344 -37.04882 -35.40221 -35.20136 -34.61405 -31.68258 -30.06635 -29.91328 -28.90992 -27.28183 -27.01549 -26.03191 -24.61454 -23.31494 -21.93874 -20.38991 -19.92952 -19.34807 -17.89984 -17.44031 -16.60679 -16.12440 -15.84649 -15.72903 -15.38004 -15.33328 -15.12144 -14.45692 -14.42780 -14.12237 -13.77017 -13.71664 -13.64974 -13.07425 -12.97135 -12.57928 -12.44638 -12.27042 -12.18093 -11.86228 -11.81839 -11.58227 -11.46174 -11.39231 -11.25588 -11.01928 -10.85634 -10.69290 -10.61021 -10.52610 -10.45011 -10.32352 -9.81173 -9.63153 -9.06601 -8.70952 -8.68613 -8.10759 -7.89280 -6.56339 -4.18989 1.45677 1.61554 3.00241 3.08631 3.13274 3.26752 3.46098 3.73589 3.89631 3.96629 4.02290 4.69213 4.77531 4.90640 4.95395 5.13414 5.24418 5.29746 5.35975 5.47358 5.61521 5.68778 5.70852 5.71223 5.73545 5.79358 5.83396 5.89706 5.91102 5.94535 5.97326 6.12053 6.20835 6.23692 6.35507 6.38374 6.43251 6.54741 6.63671 6.74207 6.76233 6.95299 7.13241 7.40198 7.56460 7.71618 8.10181 8.83861 9.12492 9.20903 9.58766 10.46569 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012427 B = 0.003596 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.606585 B = 7784.071336 C = 9477.364811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.374 6.374 3 C 0.493 3.507 4 O -0.510 6.510 5 C 0.162 3.838 6 N -0.428 5.428 7 C -0.333 4.333 8 H 0.102 0.898 9 C 0.041 3.959 10 N -0.881 5.881 11 Si 0.936 3.064 12 H -0.275 1.275 13 H -0.282 1.282 14 H -0.269 1.269 15 C 0.473 3.527 16 O -0.579 6.579 17 C 0.062 3.938 18 O -0.289 6.289 19 C 0.141 3.859 20 C -0.209 4.209 21 C -0.085 4.085 22 C -0.166 4.166 23 C -0.081 4.081 24 C -0.109 4.109 25 C -0.057 4.057 26 C -0.139 4.139 27 C -0.140 4.140 28 H 0.049 0.951 29 H 0.054 0.946 30 H 0.085 0.915 31 H 0.135 0.865 32 H 0.078 0.922 33 H 0.275 0.725 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.131 0.869 37 H 0.121 0.879 38 H 0.118 0.882 39 H 0.123 0.877 40 H 0.093 0.907 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.051 0.949 44 H 0.055 0.945 45 H 0.055 0.945 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.563 6.839 6.483 10.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.292 6.292 3 C 0.334 3.666 4 O -0.396 6.396 5 C 0.037 3.963 6 N -0.149 5.149 7 C -0.459 4.459 8 H 0.120 0.880 9 C -0.163 4.163 10 N -0.521 5.521 11 Si 0.762 3.238 12 H -0.201 1.201 13 H -0.207 1.207 14 H -0.194 1.194 15 C 0.261 3.739 16 O -0.462 6.462 17 C -0.016 4.016 18 O -0.201 6.201 19 C 0.094 3.906 20 C -0.228 4.228 21 C -0.103 4.103 22 C -0.184 4.184 23 C -0.099 4.099 24 C -0.110 4.110 25 C -0.075 4.075 26 C -0.196 4.196 27 C -0.197 4.197 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.103 0.897 31 H 0.153 0.847 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.148 0.852 37 H 0.139 0.861 38 H 0.136 0.864 39 H 0.141 0.859 40 H 0.111 0.889 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.004 6.622 6.992 10.430 hybrid contribution -0.248 0.604 -1.542 1.675 sum 3.757 7.226 5.450 9.799 Atomic orbital electron populations 1.22912 0.78891 1.01717 1.01513 1.86451 1.21493 1.35514 1.85717 1.23804 0.92169 0.80483 0.70100 1.90502 1.66575 1.36456 1.46052 1.20617 0.87361 0.84524 1.03827 1.43250 1.58084 1.08725 1.04841 1.19693 1.32451 1.09738 0.84064 0.87991 1.25244 0.94138 0.96587 1.00320 1.69569 1.32482 1.21189 1.28876 0.85769 0.77976 0.79452 0.80569 1.20080 1.20710 1.19359 1.19555 0.83379 0.86792 0.84219 1.90592 1.56040 1.68064 1.31542 1.22397 1.01542 0.96230 0.81427 1.86123 1.81636 1.23513 1.28812 1.18973 0.94043 0.84003 0.93564 1.21361 1.07235 0.95643 0.98550 1.20888 0.97732 0.94585 0.97115 1.20941 1.04985 0.99891 0.92593 1.20748 0.97983 0.92416 0.98771 1.19213 1.04829 0.94870 0.92051 1.20000 0.95551 0.99515 0.92420 1.21821 0.97358 1.01260 0.99174 1.21823 0.98198 1.00175 0.99486 0.93237 0.92767 0.89659 0.84743 0.90407 0.91350 0.89553 0.89991 0.85163 0.86138 0.86402 0.85891 0.88870 0.92580 0.92651 0.92982 0.92587 0.92569 0.92998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 10.56 101.05 1.07 1.85 16 2 O -0.37 -8.16 10.56 -39.24 -0.41 -8.57 16 3 C 0.49 12.28 5.86 36.01 0.21 12.49 16 4 O -0.51 -14.25 15.86 -18.75 -0.30 -14.55 16 5 C 0.16 3.85 5.21 -5.19 -0.03 3.83 16 6 N -0.43 -10.54 2.11 -116.09 -0.25 -10.78 16 7 C -0.33 -7.96 9.26 -14.93 -0.14 -8.10 16 8 H 0.10 2.22 6.42 -52.49 -0.34 1.88 16 9 C 0.04 0.97 5.29 -17.47 -0.09 0.88 16 10 N -0.88 -21.95 8.18 55.50 0.45 -21.50 16 11 Si 0.94 18.72 29.56 -169.99 -5.02 13.69 16 12 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 13 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 14 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 15 C 0.47 11.52 7.69 -10.98 -0.08 11.43 16 16 O -0.58 -15.60 16.14 -14.32 -0.23 -15.83 16 17 C 0.06 1.25 3.70 36.01 0.13 1.38 16 18 O -0.29 -5.79 8.44 -39.30 -0.33 -6.12 16 19 C 0.14 2.39 6.65 -39.22 -0.26 2.13 16 20 C -0.21 -3.15 9.03 -39.43 -0.36 -3.51 16 21 C -0.09 -1.09 10.04 -39.61 -0.40 -1.48 16 22 C -0.17 -1.97 10.04 -39.56 -0.40 -2.37 16 23 C -0.08 -1.02 8.71 -39.61 -0.34 -1.36 16 24 C -0.11 -1.63 4.79 -104.47 -0.50 -2.13 16 25 C -0.06 -0.80 3.06 -91.77 -0.28 -1.08 16 26 C -0.14 -1.63 9.01 37.16 0.33 -1.30 16 27 C -0.14 -1.71 9.01 37.16 0.33 -1.38 16 28 H 0.05 0.86 8.13 -51.93 -0.42 0.44 16 29 H 0.05 0.99 8.13 -51.93 -0.42 0.57 16 30 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.14 3.16 6.31 -51.93 -0.33 2.83 16 32 H 0.08 1.75 7.49 -51.93 -0.39 1.36 16 33 H 0.28 6.58 8.32 -40.82 -0.34 6.24 16 34 H 0.09 1.69 7.62 -51.93 -0.40 1.30 16 35 H 0.08 1.47 7.20 -51.93 -0.37 1.09 16 36 H 0.13 1.87 6.33 -52.49 -0.33 1.54 16 37 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 39 H 0.12 1.25 7.10 -52.49 -0.37 0.88 16 40 H 0.09 1.60 6.99 -51.93 -0.36 1.24 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.05 0.53 7.39 -51.93 -0.38 0.14 16 44 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.05 0.54 7.39 -51.93 -0.38 0.16 16 LS Contribution 381.72 15.07 5.75 5.75 Total: -1.00 -31.26 381.72 -7.74 -39.00 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -6.60 Total: 7.63 kcal Atomic # 6 Polarization: 12.08 SS G_CDS: -0.80 Total: 11.28 kcal Atomic # 7 Polarization: -32.49 SS G_CDS: 0.21 Total: -32.28 kcal Atomic # 8 Polarization: -43.80 SS G_CDS: -1.27 Total: -45.07 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.02 Total: 13.69 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.26 -7.74 -39.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609991447.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.972 kcal (2) G-P(sol) polarization free energy of solvation -31.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds