Wall clock time and date at job start Tue Mar 31 2020 18:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34225 * 117.00353 * 2 1 4 4 O 1.20826 * 119.99716 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00174 * 179.97438 * 3 2 1 6 6 N 1.46503 * 109.46818 * 180.02562 * 5 3 2 7 7 C 1.37099 * 119.99751 * 269.99667 * 6 5 3 8 8 H 1.08000 * 119.99811 * 198.18247 * 7 6 5 9 9 C 1.38951 * 120.00258 * 18.17960 * 7 6 5 10 10 N 1.31409 * 119.99869 * 3.58155 * 9 7 6 11 11 Si 1.86799 * 120.00327 * 183.57084 * 9 7 6 12 12 H 1.48495 * 109.46890 * 90.00285 * 11 9 7 13 13 H 1.48496 * 109.47490 * 210.00763 * 11 9 7 14 14 H 1.48501 * 109.47004 * 330.00520 * 11 9 7 15 15 C 1.34778 * 120.00322 * 90.00181 * 6 5 3 16 16 O 1.21295 * 119.99684 * 355.16368 * 15 6 5 17 17 C 1.50701 * 119.99990 * 175.16470 * 15 6 5 18 18 O 1.42902 * 109.46617 * 184.88748 * 17 15 6 19 19 C 1.35902 * 116.99515 * 184.82482 * 18 17 15 20 20 C 1.38754 * 120.05824 * 354.66798 * 19 18 17 21 21 C 1.38121 * 119.94234 * 179.97438 * 20 19 18 22 22 C 1.38285 * 120.05903 * 0.02562 * 21 20 19 23 23 C 1.38247 * 120.11000 * 359.97438 * 22 21 20 24 24 C 1.38161 * 120.05396 * 359.97438 * 23 22 21 25 25 C 1.50701 * 120.02691 * 180.02562 * 24 23 22 26 26 C 1.53008 * 109.46973 * 299.99828 * 25 24 23 27 27 C 1.52998 * 109.47400 * 59.99676 * 25 24 23 28 28 H 1.09001 * 109.47105 * 300.00332 * 1 2 3 29 29 H 1.08997 * 109.46482 * 60.00098 * 1 2 3 30 30 H 1.09000 * 109.47256 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47132 * 60.00313 * 5 3 2 32 32 H 1.08998 * 109.46993 * 299.99830 * 5 3 2 33 33 H 0.97001 * 120.00402 * 185.00343 * 10 9 7 34 34 H 1.08990 * 109.47202 * 64.88616 * 17 15 6 35 35 H 1.09001 * 109.47081 * 304.88173 * 17 15 6 36 36 H 1.07996 * 120.02491 * 0.25405 * 20 19 18 37 37 H 1.08001 * 119.96595 * 179.97438 * 21 20 19 38 38 H 1.07995 * 119.94475 * 179.97438 * 22 21 20 39 39 H 1.07998 * 119.97084 * 180.02562 * 23 22 21 40 40 H 1.08993 * 109.47544 * 179.97438 * 25 24 23 41 41 H 1.08993 * 109.47509 * 180.02562 * 26 25 24 42 42 H 1.08999 * 109.46787 * 299.99855 * 26 25 24 43 43 H 1.09002 * 109.46765 * 59.99676 * 26 25 24 44 44 H 1.08997 * 109.47359 * 59.99985 * 27 25 24 45 45 H 1.09002 * 109.47152 * 180.02562 * 27 25 24 46 46 H 1.09007 * 109.46888 * 300.00010 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 0.0006 6 7 3.9818 2.6797 0.0011 7 6 4.1766 3.3372 -1.1860 8 1 4.7513 4.2514 -1.2089 9 6 3.6349 2.8276 -2.3597 10 7 2.8773 1.7545 -2.3219 11 14 3.9832 3.6679 -3.9912 12 1 5.2077 3.0853 -4.5965 13 1 2.8330 3.4649 -4.9082 14 1 4.1859 5.1216 -3.7659 15 6 4.1725 3.3257 1.1685 16 8 3.9161 2.7720 2.2168 17 6 4.7041 4.7358 1.1713 18 8 4.9253 5.1587 2.5182 19 6 5.3110 6.4485 2.7044 20 6 5.5804 7.2581 1.6103 21 6 5.9717 8.5688 1.8023 22 6 6.0956 9.0741 3.0835 23 6 5.8278 8.2694 4.1753 24 6 5.4350 6.9580 3.9886 25 6 5.1427 6.0815 5.1791 26 6 6.3952 5.9713 6.0510 27 6 4.0044 6.6951 5.9969 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.9565 0.7805 -0.8891 32 1 3.9558 0.7808 0.8908 33 1 2.5587 1.3564 -3.1471 34 1 3.9800 5.3980 0.6968 35 1 5.6440 4.7708 0.6205 36 1 5.4797 6.8652 0.6094 37 1 6.1819 9.1992 0.9509 38 1 6.4021 10.0990 3.2315 39 1 5.9249 8.6664 5.1749 40 1 4.8495 5.0892 4.8366 41 1 6.1840 5.3370 6.9119 42 1 7.2061 5.5341 5.4684 43 1 6.6879 6.9638 6.3936 44 1 3.1122 6.7737 5.3759 45 1 3.7933 6.0613 6.8583 46 1 4.2972 7.6876 6.3396 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609991447.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:46 Heat of formation + Delta-G solvation = -140.607811 kcal Electronic energy + Delta-G solvation = -29614.251221 eV Core-core repulsion = 25469.407523 eV Total energy + Delta-G solvation = -4144.843697 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.59435 -41.16353 -40.13230 -38.42100 -37.27757 -36.55541 -36.22824 -33.56667 -31.51756 -31.00169 -30.36389 -28.80148 -27.97203 -27.71454 -26.39413 -24.39547 -23.13585 -22.13794 -21.35057 -20.90859 -19.28603 -19.09844 -18.49627 -17.86239 -17.43067 -17.15502 -17.01983 -16.90730 -16.42762 -16.07451 -16.02623 -15.33737 -15.19955 -14.99410 -14.76900 -14.50962 -14.34360 -14.28570 -13.99869 -13.67385 -13.27098 -13.25733 -13.12623 -12.93624 -12.89686 -12.84805 -12.61850 -12.52932 -12.45936 -12.11756 -12.06983 -11.96855 -11.59752 -11.54758 -11.50312 -11.43401 -10.98599 -10.59517 -10.01588 -9.73459 -9.05371 -8.39475 -6.08427 0.42186 0.53302 1.36511 1.45666 1.56779 1.63738 1.79157 1.82824 2.26948 2.31932 2.85658 3.02958 3.08892 3.72739 3.84520 3.93622 4.09137 4.18279 4.20630 4.29448 4.30365 4.33902 4.34493 4.37868 4.39670 4.51638 4.53755 4.61240 4.69486 4.77360 4.81552 4.84982 4.91816 4.97852 5.14477 5.22542 5.29600 5.32113 5.40884 5.51225 5.55002 5.62454 5.66809 5.69717 5.92631 6.22196 6.47387 6.97084 7.21233 7.32690 7.71284 8.63576 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012427 B = 0.003596 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.606585 B = 7784.071336 C = 9477.364811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.375 6.375 3 C 0.494 3.506 4 O -0.549 6.549 5 C 0.158 3.842 6 N -0.434 5.434 7 C -0.351 4.351 8 H 0.121 0.879 9 C -0.002 4.002 10 N -0.905 5.905 11 Si 1.004 2.996 12 H -0.263 1.263 13 H -0.291 1.291 14 H -0.258 1.258 15 C 0.456 3.544 16 O -0.617 6.617 17 C 0.078 3.922 18 O -0.316 6.316 19 C 0.098 3.902 20 C -0.220 4.220 21 C -0.088 4.088 22 C -0.154 4.154 23 C -0.079 4.079 24 C -0.121 4.121 25 C -0.059 4.059 26 C -0.132 4.132 27 C -0.135 4.135 28 H 0.048 0.952 29 H 0.044 0.956 30 H 0.134 0.866 31 H 0.137 0.863 32 H 0.082 0.918 33 H 0.275 0.725 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.130 0.870 37 H 0.149 0.851 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.048 0.952 41 H 0.064 0.936 42 H 0.041 0.959 43 H 0.077 0.923 44 H 0.035 0.965 45 H 0.064 0.936 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.668 9.355 6.376 12.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.292 6.292 3 C 0.338 3.662 4 O -0.437 6.437 5 C 0.033 3.967 6 N -0.154 5.154 7 C -0.477 4.477 8 H 0.138 0.862 9 C -0.202 4.202 10 N -0.545 5.545 11 Si 0.827 3.173 12 H -0.188 1.188 13 H -0.218 1.218 14 H -0.182 1.182 15 C 0.245 3.755 16 O -0.504 6.504 17 C 0.000 4.000 18 O -0.230 6.230 19 C 0.053 3.947 20 C -0.239 4.239 21 C -0.106 4.106 22 C -0.172 4.172 23 C -0.097 4.097 24 C -0.122 4.122 25 C -0.078 4.078 26 C -0.190 4.190 27 C -0.192 4.192 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.152 0.848 31 H 0.154 0.846 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.120 0.880 36 H 0.147 0.853 37 H 0.166 0.834 38 H 0.173 0.827 39 H 0.171 0.829 40 H 0.067 0.933 41 H 0.083 0.917 42 H 0.061 0.939 43 H 0.096 0.904 44 H 0.055 0.945 45 H 0.083 0.917 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.126 9.127 6.885 12.529 hybrid contribution -0.646 -0.191 -1.463 1.611 sum 4.479 8.935 5.421 11.371 Atomic orbital electron populations 1.23276 0.76353 1.04817 1.01042 1.86418 1.23950 1.33777 1.85043 1.23923 0.92509 0.80701 0.69064 1.90468 1.67434 1.37794 1.48048 1.20684 0.87239 0.84849 1.03957 1.43497 1.57522 1.08981 1.05370 1.20188 1.33030 1.10539 0.83946 0.86191 1.26170 0.93630 0.96993 1.03433 1.69664 1.33028 1.22300 1.29494 0.84741 0.77614 0.78959 0.75973 1.18804 1.21755 1.18229 1.20313 0.83210 0.88326 0.83633 1.90543 1.57780 1.69342 1.32725 1.22137 1.02099 0.93403 0.82373 1.86081 1.82865 1.25806 1.28229 1.19381 0.96744 0.83257 0.95305 1.21504 1.07683 0.96724 0.97965 1.21264 0.96780 0.93722 0.98825 1.21414 1.02675 1.01310 0.91784 1.21101 0.96811 0.91106 1.00673 1.19498 1.05110 0.96163 0.91411 1.19977 0.97341 0.97383 0.93098 1.21777 0.95621 1.02842 0.98723 1.21791 0.96641 1.01670 0.99071 0.93335 0.93664 0.84754 0.84600 0.89994 0.91449 0.89489 0.88043 0.85257 0.83370 0.82743 0.82887 0.93350 0.91698 0.93946 0.90441 0.94549 0.91676 0.90345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.35 10.56 113.37 1.20 2.55 16 2 O -0.38 -16.54 10.56 -51.37 -0.54 -17.09 16 3 C 0.49 25.42 5.86 71.24 0.42 25.83 16 4 O -0.55 -31.72 15.86 21.97 0.35 -31.37 16 5 C 0.16 7.81 5.21 85.63 0.45 8.26 16 6 N -0.43 -22.09 2.11 -639.59 -1.35 -23.44 16 7 C -0.35 -16.96 9.26 84.04 0.78 -16.19 16 8 H 0.12 5.19 6.42 -2.91 -0.02 5.17 16 9 C 0.00 -0.08 5.29 84.93 0.45 0.37 16 10 N -0.90 -45.64 8.18 21.66 0.18 -45.46 16 11 Si 1.00 37.83 29.56 68.60 2.03 39.86 16 12 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 13 H -0.29 -11.39 7.11 99.48 0.71 -10.68 16 14 H -0.26 -9.23 7.11 99.48 0.71 -8.52 16 15 C 0.46 23.28 7.69 87.66 0.67 23.96 16 16 O -0.62 -35.30 16.14 15.91 0.26 -35.04 16 17 C 0.08 3.26 3.70 71.24 0.26 3.52 16 18 O -0.32 -13.44 8.44 -73.46 -0.62 -14.06 16 19 C 0.10 3.42 6.65 22.51 0.15 3.57 16 20 C -0.22 -6.51 9.03 22.37 0.20 -6.31 16 21 C -0.09 -2.01 10.04 22.25 0.22 -1.78 16 22 C -0.15 -3.06 10.04 22.28 0.22 -2.83 16 23 C -0.08 -1.75 8.71 22.25 0.19 -1.55 16 24 C -0.12 -3.58 4.79 -19.77 -0.09 -3.67 16 25 C -0.06 -1.71 3.06 -11.54 -0.04 -1.74 16 26 C -0.13 -2.99 9.01 71.98 0.65 -2.34 16 27 C -0.13 -3.21 9.01 71.98 0.65 -2.56 16 28 H 0.05 1.69 8.13 -2.39 -0.02 1.67 16 29 H 0.04 1.65 8.13 -2.39 -0.02 1.63 16 30 H 0.13 3.32 8.14 -2.39 -0.02 3.30 16 31 H 0.14 6.60 6.31 -2.39 -0.02 6.59 16 32 H 0.08 3.89 7.49 -2.39 -0.02 3.87 16 33 H 0.27 13.27 8.32 -92.71 -0.77 12.50 16 34 H 0.09 3.55 7.62 -2.39 -0.02 3.53 16 35 H 0.10 3.73 7.20 -2.39 -0.02 3.71 16 36 H 0.13 3.70 6.33 -2.91 -0.02 3.68 16 37 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 38 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 39 H 0.15 2.40 7.10 -2.91 -0.02 2.38 16 40 H 0.05 1.80 6.99 -2.39 -0.02 1.79 16 41 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.08 1.34 7.39 -2.39 -0.02 1.32 16 44 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.08 1.43 7.39 -2.38 -0.02 1.41 16 Total: -1.00 -71.37 381.72 7.67 -63.70 By element: Atomic # 1 Polarization: 32.84 SS G_CDS: 0.99 Total: 33.83 kcal Atomic # 6 Polarization: 22.69 SS G_CDS: 6.38 Total: 29.08 kcal Atomic # 7 Polarization: -67.73 SS G_CDS: -1.17 Total: -68.90 kcal Atomic # 8 Polarization: -97.00 SS G_CDS: -0.56 Total: -97.56 kcal Atomic # 14 Polarization: 37.83 SS G_CDS: 2.03 Total: 39.86 kcal Total: -71.37 7.67 -63.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609991447.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.905 kcal (2) G-P(sol) polarization free energy of solvation -71.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds