Wall clock time and date at job start Tue Mar 31 2020 18:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47498 * 2 1 4 4 C 1.52996 * 109.47312 * 120.00329 * 2 1 3 5 5 N 1.46500 * 109.47305 * 64.99526 * 4 2 1 6 6 C 1.46497 * 120.00181 * 270.00351 * 5 4 2 7 7 C 1.50704 * 109.46898 * 269.99611 * 6 5 4 8 8 H 1.07995 * 120.00107 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00011 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99873 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 119.99760 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47311 * 89.99740 * 11 9 7 13 13 H 1.48498 * 109.46758 * 209.99897 * 11 9 7 14 14 H 1.48500 * 109.47282 * 329.99636 * 11 9 7 15 15 C 1.34784 * 119.99817 * 90.00260 * 5 4 2 16 16 S 1.71202 * 119.99720 * 179.97438 * 15 5 4 17 17 N 1.34776 * 120.00047 * 359.97438 * 15 5 4 18 18 C 1.39359 * 119.99880 * 185.52629 * 17 15 5 19 19 C 1.39152 * 119.92680 * 42.11835 * 18 17 15 20 20 C 1.37652 * 120.07028 * 180.02562 * 19 18 17 21 21 C 1.39763 * 119.92969 * 359.97438 * 20 19 18 22 22 C 1.47578 * 120.07405 * 179.97438 * 21 20 19 23 23 N 1.34775 * 120.00163 * 180.02562 * 22 21 20 24 24 O 1.21594 * 119.99571 * 0.02562 * 22 21 20 25 25 C 1.39761 * 119.85553 * 0.26061 * 21 20 19 26 26 C 1.37658 * 119.92074 * 359.48252 * 25 21 20 27 27 H 1.09001 * 109.47448 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47023 * 299.99640 * 1 2 3 29 29 H 1.08994 * 109.47449 * 59.99924 * 1 2 3 30 30 H 1.09003 * 109.46500 * 239.99853 * 2 1 3 31 31 H 1.09000 * 109.47805 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.47152 * 300.00532 * 3 2 1 33 33 H 1.09007 * 109.47249 * 59.99637 * 3 2 1 34 34 H 1.09001 * 109.46936 * 304.99793 * 4 2 1 35 35 H 1.09002 * 109.47387 * 184.99384 * 4 2 1 36 36 H 1.08994 * 109.47358 * 30.00054 * 6 5 4 37 37 H 1.09004 * 109.47415 * 150.00287 * 6 5 4 38 38 H 0.97003 * 119.99767 * 180.02562 * 10 9 7 39 39 H 0.97006 * 119.99646 * 5.53392 * 17 15 5 40 40 H 1.07992 * 119.96613 * 359.97438 * 19 18 17 41 41 H 1.08007 * 120.03784 * 179.97438 * 20 19 18 42 42 H 0.96997 * 119.99505 * 359.97438 * 23 22 21 43 43 H 0.96999 * 119.99906 * 179.73274 * 23 22 21 44 44 H 1.07995 * 120.03889 * 179.74910 * 25 21 20 45 45 H 1.08005 * 119.96012 * 180.23363 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6524 -2.1329 1.1905 6 6 0.3745 -2.5659 1.7612 7 6 0.5717 -2.9409 3.2075 8 1 1.5508 -2.8639 3.6567 9 6 -0.4982 -3.3813 3.9575 10 7 -0.3262 -3.7080 5.2197 11 14 -2.1919 -3.5138 3.1807 12 1 -2.3636 -4.8678 2.5956 13 1 -3.2308 -3.2870 4.2172 14 1 -2.3276 -2.4919 2.1118 15 6 2.4715 -3.0331 0.6114 16 16 2.0188 -4.6828 0.5435 17 7 3.6468 -2.6346 0.0859 18 6 4.4406 -3.5417 -0.6135 19 6 3.8537 -4.4337 -1.5059 20 6 4.6349 -5.3313 -2.1979 21 6 6.0189 -5.3457 -2.0040 22 6 6.8594 -6.3070 -2.7439 23 7 8.1938 -6.3200 -2.5554 24 8 6.3479 -7.0874 -3.5236 25 6 6.6047 -4.4518 -1.1034 26 6 5.8183 -3.5532 -0.4184 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.8932 -0.5139 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6054 -0.2618 2.1369 35 1 3.1263 -0.6445 1.2950 36 1 -0.3484 -1.7532 1.6918 37 1 0.0042 -3.4298 1.2092 38 1 -1.0788 -4.0182 5.7473 39 1 3.9403 -1.7164 0.1947 40 1 2.7842 -4.4224 -1.6550 41 1 4.1788 -6.0237 -2.8901 42 1 8.6018 -5.6972 -1.9337 43 1 8.7458 -6.9545 -3.0388 44 1 7.6733 -4.4631 -0.9482 45 1 6.2707 -2.8595 0.2749 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726438963.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:41 Heat of formation + Delta-G solvation = 13.012477 kcal Electronic energy + Delta-G solvation = -26485.802958 eV Core-core repulsion = 22822.666359 eV Total energy + Delta-G solvation = -3663.136600 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.48169 -39.61626 -38.31175 -35.95224 -34.52120 -33.89229 -32.51572 -31.03473 -30.02623 -28.44204 -27.24716 -26.93060 -24.25751 -23.24973 -22.51372 -21.28326 -20.66776 -20.22146 -18.52856 -18.03290 -17.59770 -17.09576 -16.86031 -15.63989 -15.38959 -15.07764 -15.05553 -14.79502 -14.63620 -14.34235 -13.90972 -13.73880 -13.54605 -13.20037 -12.93343 -12.60779 -12.59499 -12.42475 -12.37957 -12.02505 -11.83747 -11.45007 -11.20713 -11.07336 -10.91241 -10.90106 -10.61851 -10.42366 -10.28919 -10.18252 -9.89291 -9.68559 -9.23644 -9.04378 -8.63911 -8.08159 -7.13894 -6.43129 -6.14268 -4.14149 0.68399 1.41581 1.86463 2.39875 2.85518 3.05510 3.26034 3.30520 3.37206 3.37743 3.50095 3.87596 4.34950 4.59016 4.68219 4.68733 4.74810 4.86577 4.88932 5.15583 5.19929 5.27915 5.36223 5.39012 5.51973 5.53450 5.65628 5.71653 5.79257 5.90514 5.93744 6.03126 6.08924 6.14794 6.27395 6.29785 6.38890 6.52818 6.60048 6.66970 6.88282 7.00680 7.15960 7.28099 7.44971 7.62210 8.11265 8.36261 8.84604 9.43032 10.98747 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012982 B = 0.003398 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.302263 B = 8237.148680 C = 9485.070103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.144 4.144 4 C 0.093 3.907 5 N -0.522 5.522 6 C 0.205 3.795 7 C -0.524 4.524 8 H 0.074 0.926 9 C 0.081 3.919 10 N -0.892 5.892 11 Si 0.872 3.128 12 H -0.268 1.268 13 H -0.285 1.285 14 H -0.267 1.267 15 C 0.551 3.449 16 S -0.618 6.618 17 N -0.653 5.653 18 C 0.181 3.819 19 C -0.082 4.082 20 C -0.049 4.049 21 C -0.152 4.152 22 C 0.567 3.433 23 N -0.855 5.855 24 O -0.543 6.543 25 C -0.079 4.079 26 C -0.143 4.143 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.104 0.896 35 H 0.068 0.932 36 H 0.044 0.956 37 H 0.069 0.931 38 H 0.266 0.734 39 H 0.402 0.598 40 H 0.151 0.849 41 H 0.138 0.862 42 H 0.400 0.600 43 H 0.402 0.598 44 H 0.126 0.874 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.031 9.556 -13.774 21.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.132 4.132 3 C -0.202 4.202 4 C -0.033 4.033 5 N -0.224 5.224 6 C 0.085 3.915 7 C -0.563 4.563 8 H 0.092 0.908 9 C -0.122 4.122 10 N -0.530 5.530 11 Si 0.699 3.301 12 H -0.194 1.194 13 H -0.211 1.211 14 H -0.192 1.192 15 C 0.194 3.806 16 S -0.484 6.484 17 N -0.283 5.283 18 C 0.086 3.914 19 C -0.105 4.105 20 C -0.070 4.070 21 C -0.156 4.156 22 C 0.354 3.646 23 N -0.419 5.419 24 O -0.421 6.421 25 C -0.099 4.099 26 C -0.165 4.165 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.122 0.878 35 H 0.086 0.914 36 H 0.062 0.938 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.242 0.758 40 H 0.169 0.831 41 H 0.156 0.844 42 H 0.229 0.771 43 H 0.233 0.767 44 H 0.144 0.856 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 12.930 8.077 -13.965 20.675 hybrid contribution 0.048 1.235 0.371 1.290 sum 12.978 9.312 -13.593 20.974 Atomic orbital electron populations 1.21976 0.94157 1.03076 1.01841 1.21562 0.97610 0.96379 0.97691 1.21784 1.00698 0.95279 1.02445 1.22008 0.99566 0.81564 1.00172 1.47513 1.19613 1.05238 1.50053 1.20472 0.77567 0.97497 0.95981 1.20979 0.97557 1.45695 0.92054 0.90837 1.24715 0.98743 0.94172 0.94599 1.69870 1.31740 1.44057 1.07321 0.86912 0.84221 0.79741 0.79217 1.19352 1.21124 1.19168 1.22327 0.82118 0.94796 0.81335 1.93263 1.82302 0.95164 1.77624 1.42251 1.18532 1.13199 1.54283 1.17587 0.89533 0.92633 0.91668 1.21426 1.01851 0.94622 0.92633 1.21044 0.91447 0.97076 0.97437 1.19793 0.94592 0.99552 1.01684 1.18286 0.82228 0.82882 0.81206 1.43762 1.08043 1.41528 1.48533 1.90820 1.73351 1.40935 1.36976 1.20850 0.99092 0.94458 0.95524 1.20754 0.92071 1.01683 1.01962 0.91505 0.92032 0.92767 0.91214 0.92717 0.92220 0.92046 0.87801 0.91377 0.93840 0.91294 0.92405 0.75839 0.83147 0.84433 0.77057 0.76705 0.85648 0.85420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 8.18 37.16 0.30 -1.55 16 2 C -0.11 -1.20 3.13 -90.63 -0.28 -1.48 16 3 C -0.14 -1.16 9.19 37.15 0.34 -0.82 16 4 C 0.09 1.21 4.71 -4.04 -0.02 1.20 16 5 N -0.52 -9.33 2.28 -177.08 -0.40 -9.73 16 6 C 0.20 4.51 3.06 -5.19 -0.02 4.49 16 7 C -0.52 -14.11 9.94 -34.44 -0.34 -14.45 16 8 H 0.07 2.21 8.06 -52.49 -0.42 1.79 16 9 C 0.08 2.27 5.47 -17.82 -0.10 2.18 16 10 N -0.89 -26.81 13.96 55.43 0.77 -26.04 16 11 Si 0.87 20.88 27.47 -169.99 -4.67 16.22 16 12 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.27 -5.87 6.54 56.52 0.37 -5.50 16 15 C 0.55 10.06 7.45 -86.91 -0.65 9.41 16 16 S -0.62 -14.19 24.46 -107.50 -2.63 -16.82 16 17 N -0.65 -8.96 5.17 -11.40 -0.06 -9.02 16 18 C 0.18 2.46 5.90 -83.76 -0.49 1.96 16 19 C -0.08 -1.22 7.82 -39.46 -0.31 -1.53 16 20 C -0.05 -0.68 9.58 -39.23 -0.38 -1.05 16 21 C -0.15 -1.84 5.88 -104.95 -0.62 -2.46 16 22 C 0.57 6.87 8.04 -12.45 -0.10 6.77 16 23 N -0.85 -6.24 8.82 30.47 0.27 -5.97 16 24 O -0.54 -8.76 17.17 5.28 0.09 -8.67 16 25 C -0.08 -0.77 9.53 -39.22 -0.37 -1.14 16 26 C -0.14 -1.55 9.95 -39.45 -0.39 -1.94 16 27 H 0.07 0.98 5.89 -51.93 -0.31 0.67 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.10 1.45 8.07 -51.93 -0.42 1.03 16 35 H 0.07 0.71 6.29 -51.93 -0.33 0.39 16 36 H 0.04 0.91 5.03 -51.93 -0.26 0.64 16 37 H 0.07 1.67 6.01 -51.93 -0.31 1.36 16 38 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 39 H 0.40 4.19 6.52 -40.82 -0.27 3.92 16 40 H 0.15 2.48 6.27 -49.99 -0.31 2.17 16 41 H 0.14 1.93 7.64 -52.48 -0.40 1.52 16 42 H 0.40 1.76 6.85 -40.82 -0.28 1.48 16 43 H 0.40 2.38 8.93 -40.82 -0.36 2.01 16 44 H 0.13 0.73 6.39 -52.49 -0.34 0.40 16 45 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 LS Contribution 375.09 15.07 5.65 5.65 Total: -1.00 -36.29 375.09 -10.53 -46.82 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -6.13 Total: 7.97 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: -3.42 Total: -0.42 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: 0.58 Total: -50.76 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.09 Total: -8.67 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.67 Total: 16.22 kcal Atomic # 16 Polarization: -14.19 SS G_CDS: -2.63 Total: -16.82 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.29 -10.53 -46.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726438963.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.836 kcal (2) G-P(sol) polarization free energy of solvation -36.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds