Wall clock time and date at job start Tue Mar 31 2020 18:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47498 * 2 1 4 4 C 1.52996 * 109.47312 * 120.00329 * 2 1 3 5 5 N 1.46500 * 109.47305 * 64.99526 * 4 2 1 6 6 C 1.46497 * 120.00181 * 270.00351 * 5 4 2 7 7 C 1.50704 * 109.46898 * 269.99611 * 6 5 4 8 8 H 1.07995 * 120.00107 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00011 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99873 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 119.99760 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47311 * 89.99740 * 11 9 7 13 13 H 1.48498 * 109.46758 * 209.99897 * 11 9 7 14 14 H 1.48500 * 109.47282 * 329.99636 * 11 9 7 15 15 C 1.34784 * 119.99817 * 90.00260 * 5 4 2 16 16 S 1.71202 * 119.99720 * 179.97438 * 15 5 4 17 17 N 1.34776 * 120.00047 * 359.97438 * 15 5 4 18 18 C 1.39359 * 119.99880 * 185.52629 * 17 15 5 19 19 C 1.39152 * 119.92680 * 42.11835 * 18 17 15 20 20 C 1.37652 * 120.07028 * 180.02562 * 19 18 17 21 21 C 1.39763 * 119.92969 * 359.97438 * 20 19 18 22 22 C 1.47578 * 120.07405 * 179.97438 * 21 20 19 23 23 N 1.34775 * 120.00163 * 180.02562 * 22 21 20 24 24 O 1.21594 * 119.99571 * 0.02562 * 22 21 20 25 25 C 1.39761 * 119.85553 * 0.26061 * 21 20 19 26 26 C 1.37658 * 119.92074 * 359.48252 * 25 21 20 27 27 H 1.09001 * 109.47448 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47023 * 299.99640 * 1 2 3 29 29 H 1.08994 * 109.47449 * 59.99924 * 1 2 3 30 30 H 1.09003 * 109.46500 * 239.99853 * 2 1 3 31 31 H 1.09000 * 109.47805 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.47152 * 300.00532 * 3 2 1 33 33 H 1.09007 * 109.47249 * 59.99637 * 3 2 1 34 34 H 1.09001 * 109.46936 * 304.99793 * 4 2 1 35 35 H 1.09002 * 109.47387 * 184.99384 * 4 2 1 36 36 H 1.08994 * 109.47358 * 30.00054 * 6 5 4 37 37 H 1.09004 * 109.47415 * 150.00287 * 6 5 4 38 38 H 0.97003 * 119.99767 * 180.02562 * 10 9 7 39 39 H 0.97006 * 119.99646 * 5.53392 * 17 15 5 40 40 H 1.07992 * 119.96613 * 359.97438 * 19 18 17 41 41 H 1.08007 * 120.03784 * 179.97438 * 20 19 18 42 42 H 0.96997 * 119.99505 * 359.97438 * 23 22 21 43 43 H 0.96999 * 119.99906 * 179.73274 * 23 22 21 44 44 H 1.07995 * 120.03889 * 179.74910 * 25 21 20 45 45 H 1.08005 * 119.96012 * 180.23363 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6524 -2.1329 1.1905 6 6 0.3745 -2.5659 1.7612 7 6 0.5717 -2.9409 3.2075 8 1 1.5508 -2.8639 3.6567 9 6 -0.4982 -3.3813 3.9575 10 7 -0.3262 -3.7080 5.2197 11 14 -2.1919 -3.5138 3.1807 12 1 -2.3636 -4.8678 2.5956 13 1 -3.2308 -3.2870 4.2172 14 1 -2.3276 -2.4919 2.1118 15 6 2.4715 -3.0331 0.6114 16 16 2.0188 -4.6828 0.5435 17 7 3.6468 -2.6346 0.0859 18 6 4.4406 -3.5417 -0.6135 19 6 3.8537 -4.4337 -1.5059 20 6 4.6349 -5.3313 -2.1979 21 6 6.0189 -5.3457 -2.0040 22 6 6.8594 -6.3070 -2.7439 23 7 8.1938 -6.3200 -2.5554 24 8 6.3479 -7.0874 -3.5236 25 6 6.6047 -4.4518 -1.1034 26 6 5.8183 -3.5532 -0.4184 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.8932 -0.5139 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6054 -0.2618 2.1369 35 1 3.1263 -0.6445 1.2950 36 1 -0.3484 -1.7532 1.6918 37 1 0.0042 -3.4298 1.2092 38 1 -1.0788 -4.0182 5.7473 39 1 3.9403 -1.7164 0.1947 40 1 2.7842 -4.4224 -1.6550 41 1 4.1788 -6.0237 -2.8901 42 1 8.6018 -5.6972 -1.9337 43 1 8.7458 -6.9545 -3.0388 44 1 7.6733 -4.4631 -0.9482 45 1 6.2707 -2.8595 0.2749 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726438963.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:41 Heat of formation + Delta-G solvation = -12.547849 kcal Electronic energy + Delta-G solvation = -26486.911337 eV Core-core repulsion = 22822.666359 eV Total energy + Delta-G solvation = -3664.244979 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.61663 -40.74875 -39.41621 -37.03083 -35.80717 -34.82939 -34.42104 -32.01990 -31.32340 -29.94580 -28.21244 -28.05064 -25.65247 -24.38350 -23.86827 -22.59597 -21.64880 -21.24999 -19.60754 -19.20441 -19.10312 -18.78194 -17.76043 -17.07873 -16.56763 -16.43227 -16.05716 -15.95927 -15.76864 -15.68699 -15.07155 -14.89294 -14.50070 -14.44812 -14.26262 -13.98243 -13.90676 -13.58906 -13.54654 -13.15430 -12.99334 -12.77926 -12.59474 -12.32739 -12.26464 -12.02025 -11.98656 -11.81025 -11.73607 -11.66655 -11.21120 -10.80209 -10.73125 -10.56097 -10.04370 -9.29771 -8.86825 -8.31914 -8.14084 -6.34794 -0.39545 0.43858 0.48139 0.94627 1.31414 1.40921 1.42459 1.57360 1.87955 2.24196 2.31928 2.57696 2.88963 3.05312 3.62328 3.76209 3.80995 3.94455 3.98381 4.02089 4.24844 4.30790 4.35622 4.44374 4.53488 4.59113 4.72307 4.81516 4.84083 4.93905 4.96943 5.01693 5.06266 5.16509 5.21405 5.24263 5.34347 5.37953 5.43233 5.43709 5.62224 5.68393 5.89467 5.95938 6.21883 6.32686 6.45883 6.63293 7.25932 7.32462 8.85036 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012982 B = 0.003398 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.302263 B = 8237.148680 C = 9485.070103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.103 4.103 3 C -0.138 4.138 4 C 0.085 3.915 5 N -0.523 5.523 6 C 0.220 3.780 7 C -0.517 4.517 8 H 0.031 0.969 9 C 0.022 3.978 10 N -0.942 5.942 11 Si 0.934 3.066 12 H -0.282 1.282 13 H -0.278 1.278 14 H -0.234 1.234 15 C 0.575 3.425 16 S -0.726 6.726 17 N -0.623 5.623 18 C 0.156 3.844 19 C -0.095 4.095 20 C -0.068 4.068 21 C -0.154 4.154 22 C 0.564 3.436 23 N -0.826 5.826 24 O -0.593 6.593 25 C -0.061 4.061 26 C -0.129 4.129 27 H 0.036 0.964 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.066 0.934 37 H 0.048 0.952 38 H 0.267 0.733 39 H 0.423 0.577 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.418 0.582 43 H 0.413 0.587 44 H 0.177 0.823 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.754 12.731 -14.789 25.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.123 4.123 3 C -0.196 4.196 4 C -0.039 4.039 5 N -0.223 5.223 6 C 0.098 3.902 7 C -0.556 4.556 8 H 0.050 0.950 9 C -0.176 4.176 10 N -0.582 5.582 11 Si 0.757 3.243 12 H -0.208 1.208 13 H -0.203 1.203 14 H -0.157 1.157 15 C 0.214 3.786 16 S -0.594 6.594 17 N -0.253 5.253 18 C 0.061 3.939 19 C -0.118 4.118 20 C -0.089 4.089 21 C -0.158 4.158 22 C 0.351 3.649 23 N -0.391 5.391 24 O -0.475 6.475 25 C -0.081 4.081 26 C -0.150 4.150 27 H 0.055 0.945 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.267 0.733 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.251 0.749 43 H 0.245 0.755 44 H 0.194 0.806 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 15.771 11.346 -15.007 24.549 hybrid contribution -0.569 0.307 0.651 0.918 sum 15.202 11.653 -14.356 23.937 Atomic orbital electron populations 1.22004 0.95348 1.01319 1.02797 1.21508 0.96590 0.98024 0.96148 1.21755 1.01962 0.92808 1.03076 1.22429 1.01698 0.78436 1.01374 1.47399 1.18414 1.07217 1.49315 1.20038 0.79949 0.97470 0.92764 1.21163 0.95501 1.44616 0.94319 0.95047 1.25585 1.03055 0.94043 0.94963 1.70015 1.33060 1.46088 1.09075 0.85925 0.79328 0.79782 0.79228 1.20803 1.20324 1.15661 1.21692 0.83219 0.92682 0.81032 1.93486 1.84443 1.00138 1.81324 1.41998 1.16571 1.14315 1.52418 1.17834 0.90815 0.93079 0.92154 1.21185 1.00696 0.95818 0.94100 1.20976 0.92841 0.97136 0.97918 1.19941 0.93743 1.00060 1.02104 1.18344 0.83568 0.82332 0.80689 1.43517 1.06292 1.41366 1.47901 1.90806 1.74559 1.42897 1.39214 1.21351 1.01416 0.92227 0.93079 1.21157 0.90395 1.01787 1.01618 0.94492 0.92057 0.90938 0.91045 0.90719 0.91150 0.91911 0.88435 0.88113 0.91642 0.93415 0.92399 0.73288 0.85947 0.86103 0.74885 0.75477 0.80592 0.81738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.48 8.18 71.98 0.59 -2.89 16 2 C -0.10 -1.89 3.13 -10.80 -0.03 -1.92 16 3 C -0.14 -1.64 9.19 71.98 0.66 -0.98 16 4 C 0.08 2.01 4.71 86.38 0.41 2.41 16 5 N -0.52 -18.44 2.28 -714.17 -1.63 -20.07 16 6 C 0.22 9.78 3.06 85.64 0.26 10.04 16 7 C -0.52 -28.67 9.94 25.60 0.25 -28.42 16 8 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 9 C 0.02 1.27 5.47 84.66 0.46 1.73 16 10 N -0.94 -58.65 13.96 21.45 0.30 -58.35 16 11 Si 0.93 43.84 27.47 68.60 1.88 45.72 16 12 H -0.28 -13.83 7.11 99.48 0.71 -13.13 16 13 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 14 H -0.23 -9.59 6.54 99.48 0.65 -8.94 16 15 C 0.58 21.04 7.45 179.05 1.33 22.38 16 16 S -0.73 -35.19 24.46 -56.49 -1.38 -36.58 16 17 N -0.62 -15.96 5.17 -189.98 -0.98 -16.94 16 18 C 0.16 3.99 5.90 38.38 0.23 4.22 16 19 C -0.10 -2.93 7.82 22.35 0.17 -2.75 16 20 C -0.07 -1.96 9.58 22.50 0.22 -1.75 16 21 C -0.15 -3.52 5.88 -20.08 -0.12 -3.63 16 22 C 0.56 12.87 8.04 86.71 0.70 13.56 16 23 N -0.83 -9.34 8.82 -175.78 -1.55 -10.89 16 24 O -0.59 -19.38 17.17 -4.01 -0.07 -19.45 16 25 C -0.06 -0.93 9.53 22.50 0.21 -0.72 16 26 C -0.13 -2.26 9.95 22.35 0.22 -2.03 16 27 H 0.04 1.03 5.89 -2.39 -0.01 1.02 16 28 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 29 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 34 H 0.10 2.52 8.07 -2.39 -0.02 2.50 16 35 H 0.10 1.71 6.29 -2.39 -0.02 1.70 16 36 H 0.07 2.67 5.03 -2.39 -0.01 2.65 16 37 H 0.05 2.39 6.01 -2.38 -0.01 2.37 16 38 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 39 H 0.42 7.23 6.52 -92.70 -0.60 6.63 16 40 H 0.12 4.42 6.27 -4.50 -0.03 4.39 16 41 H 0.12 3.78 7.64 -2.91 -0.02 3.76 16 42 H 0.42 1.60 6.85 -92.71 -0.63 0.97 16 43 H 0.41 3.64 8.93 -92.71 -0.83 2.82 16 44 H 0.18 0.87 6.39 -2.91 -0.02 0.85 16 45 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -88.20 375.09 1.06 -87.14 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: -1.08 Total: 20.15 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: 5.57 Total: 9.26 kcal Atomic # 7 Polarization: -102.39 SS G_CDS: -3.86 Total: -106.25 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.07 Total: -19.45 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.88 Total: 45.72 kcal Atomic # 16 Polarization: -35.19 SS G_CDS: -1.38 Total: -36.58 kcal Total: -88.20 1.06 -87.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726438963.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.593 kcal (2) G-P(sol) polarization free energy of solvation -88.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds