Wall clock time and date at job start Tue Mar 31 2020 18:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.46819 * 2 1 4 4 C 1.53001 * 109.46815 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.47116 * 180.02562 * 4 3 2 6 6 O 1.42899 * 109.47265 * 180.02562 * 5 4 3 7 7 C 1.35694 * 117.00093 * 179.97438 * 6 5 4 8 8 C 1.39021 * 119.90499 * 0.27444 * 7 6 5 9 9 C 1.37679 * 120.09068 * 180.28089 * 8 7 6 10 10 C 1.39794 * 119.90398 * 359.43972 * 9 8 7 11 11 C 1.47473 * 120.08904 * 180.29757 * 10 9 8 12 12 O 1.21498 * 120.00032 * 0.02562 * 11 10 9 13 13 O 1.34752 * 119.99783 * 180.02562 * 11 10 9 14 14 C 1.45204 * 116.99850 * 180.02562 * 13 11 10 15 15 C 1.50701 * 109.46797 * 180.02562 * 14 13 11 16 16 O 1.21288 * 120.00302 * 0.02562 * 15 14 13 17 17 N 1.34782 * 119.99776 * 179.97438 * 15 14 13 18 18 C 1.37099 * 119.99896 * 180.02562 * 17 15 14 19 19 H 1.07994 * 120.00075 * 359.97438 * 18 17 15 20 20 C 1.38944 * 119.99839 * 180.02562 * 18 17 15 21 21 N 1.31418 * 120.00081 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00073 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47081 * 59.99930 * 22 20 18 24 24 H 1.48497 * 109.47118 * 179.97438 * 22 20 18 25 25 H 1.48491 * 109.46927 * 299.99576 * 22 20 18 26 26 C 1.39784 * 119.81736 * 0.28441 * 10 9 8 27 27 C 1.37681 * 119.90771 * 359.97438 * 26 10 9 28 28 H 1.08998 * 109.47685 * 59.99570 * 1 2 3 29 29 H 1.09000 * 109.47098 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46826 * 299.99830 * 1 2 3 31 31 H 1.09000 * 109.47285 * 240.00442 * 2 1 3 32 32 H 1.08992 * 109.47482 * 120.00031 * 2 1 3 33 33 H 1.08992 * 109.47429 * 60.00170 * 3 2 1 34 34 H 1.09000 * 109.46962 * 299.99975 * 3 2 1 35 35 H 1.09000 * 109.47152 * 59.99972 * 4 3 2 36 36 H 1.09000 * 109.47011 * 299.99548 * 4 3 2 37 37 H 1.09000 * 109.46683 * 59.99674 * 5 4 3 38 38 H 1.09000 * 109.46810 * 299.99669 * 5 4 3 39 39 H 1.07998 * 119.95278 * 359.97438 * 8 7 6 40 40 H 1.08002 * 120.04953 * 179.72504 * 9 8 7 41 41 H 1.09000 * 109.47171 * 300.00282 * 14 13 11 42 42 H 1.09001 * 109.46834 * 60.00652 * 14 13 11 43 43 H 0.97003 * 119.99677 * 0.02562 * 17 15 14 44 44 H 0.96998 * 119.99992 * 179.97438 * 21 20 18 45 45 H 1.08005 * 120.04680 * 180.02562 * 26 10 9 46 46 H 1.08000 * 119.95490 * 180.02562 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0800 2.8851 0.0000 6 8 5.5090 2.8852 -0.0012 7 6 6.1250 4.0942 -0.0014 8 6 5.3659 5.2589 0.0054 9 6 5.9869 6.4876 -0.0006 10 6 7.3828 6.5630 -0.0016 11 6 8.0523 7.8771 -0.0014 12 8 7.3905 8.8960 0.0002 13 8 9.3979 7.9476 -0.0029 14 6 9.9885 9.2741 -0.0020 15 6 11.4908 9.1551 -0.0046 16 8 12.0124 8.0601 -0.0074 17 7 12.2547 10.2655 -0.0047 18 6 13.6214 10.1573 -0.0076 19 1 14.0859 9.1823 -0.0093 20 6 14.4090 11.3020 -0.0073 21 7 13.8438 12.4884 -0.0047 22 14 16.2712 11.1546 -0.0119 23 1 16.7065 10.4200 -1.2268 24 1 16.8751 12.5112 -0.0114 25 1 16.7121 10.4155 1.1981 26 6 8.1423 5.3895 -0.0026 27 6 7.5133 4.1648 -0.0020 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6767 1.9564 0.8899 34 1 1.6766 1.9564 -0.8900 35 1 3.9329 0.9289 -0.8909 36 1 3.9337 0.9287 0.8892 37 1 3.7169 3.3984 0.8904 38 1 3.7163 3.3994 -0.8896 39 1 4.2876 5.1997 0.0103 40 1 5.3965 7.3920 0.0002 41 1 9.6657 9.8161 -0.8909 42 1 9.6680 9.8139 0.8891 43 1 11.8375 11.1412 -0.0028 44 1 14.3936 13.2875 -0.0041 45 1 9.2210 5.4434 -0.0030 46 1 8.0993 3.2576 -0.0023 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731235978.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:50 Heat of formation + Delta-G solvation = -156.655405 kcal Electronic energy + Delta-G solvation = -26622.106775 eV Core-core repulsion = 22476.567201 eV Total energy + Delta-G solvation = -4145.539573 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.72152 -39.98123 -38.23556 -37.62899 -36.30529 -35.95877 -33.97988 -32.29643 -31.40134 -31.30260 -30.51869 -28.24542 -26.87657 -24.80599 -23.70041 -23.49391 -21.92889 -21.51001 -20.79628 -19.55138 -18.57338 -18.04496 -17.83939 -16.92740 -16.64280 -16.23644 -16.01130 -15.67248 -15.60705 -14.86155 -14.58889 -14.40607 -14.11776 -14.02676 -13.95654 -13.87411 -13.68831 -13.47241 -13.03425 -12.78023 -12.57840 -12.28611 -12.14558 -11.93965 -11.82600 -11.68787 -11.60308 -11.36140 -11.21249 -11.09815 -11.05626 -11.01286 -10.47699 -10.43900 -10.37235 -10.26899 -9.57779 -9.32565 -8.56178 -8.50118 -8.06390 -6.48143 -3.90232 0.63394 1.10696 2.57435 2.68294 2.76115 3.16949 3.24093 3.28981 3.62426 3.76478 4.13186 4.22072 4.28586 4.42103 4.50464 4.55996 4.57132 4.65858 4.72754 4.83227 4.97031 4.98672 5.06317 5.12036 5.16749 5.17095 5.22285 5.30173 5.40522 5.40624 5.51696 5.54199 5.62509 5.72321 5.73132 5.75860 5.79311 5.92881 5.97640 6.08590 6.18839 6.41059 6.64325 7.01001 7.49296 7.88110 7.98969 8.50572 9.08765 9.41288 9.91297 10.69050 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.042053 B = 0.001461 C = 0.001415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.665400 B =19160.604690 C =19784.613281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.118 4.118 4 C -0.120 4.120 5 C 0.056 3.944 6 O -0.311 6.311 7 C 0.162 3.838 8 C -0.226 4.226 9 C -0.013 4.013 10 C -0.161 4.161 11 C 0.508 3.492 12 O -0.517 6.517 13 O -0.322 6.322 14 C 0.062 3.938 15 C 0.439 3.561 16 O -0.576 6.576 17 N -0.552 5.552 18 C -0.303 4.303 19 H 0.106 0.894 20 C 0.026 3.974 21 N -0.898 5.898 22 Si 0.934 3.066 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.272 1.272 26 C -0.016 4.016 27 C -0.166 4.166 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.135 0.865 40 H 0.140 0.860 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.395 0.605 44 H 0.274 0.726 45 H 0.153 0.847 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.098 -19.386 0.024 31.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.155 4.155 4 C -0.157 4.157 5 C -0.019 4.019 6 O -0.224 6.224 7 C 0.116 3.884 8 C -0.245 4.245 9 C -0.031 4.031 10 C -0.162 4.162 11 C 0.353 3.647 12 O -0.407 6.407 13 O -0.236 6.236 14 C -0.016 4.016 15 C 0.224 3.776 16 O -0.460 6.460 17 N -0.190 5.190 18 C -0.432 4.432 19 H 0.123 0.877 20 C -0.177 4.177 21 N -0.538 5.538 22 Si 0.761 3.239 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.198 1.198 26 C -0.034 4.034 27 C -0.185 4.185 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.153 0.847 40 H 0.158 0.842 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.229 0.771 44 H 0.084 0.916 45 H 0.171 0.829 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -24.736 -19.806 0.022 31.688 hybrid contribution 0.395 1.001 0.000 1.077 sum -24.341 -18.804 0.021 30.758 Atomic orbital electron populations 1.21780 0.95670 1.01781 1.01906 1.21507 0.95997 0.96314 1.02351 1.21537 0.93794 0.97638 1.02580 1.21575 0.95585 0.94627 1.03960 1.22933 0.78118 0.99096 1.01799 1.86030 1.21636 1.27028 1.87670 1.19337 0.92410 0.84084 0.92551 1.21140 1.00301 0.91742 1.11268 1.21032 0.92636 0.97956 0.91520 1.19042 0.93413 0.90837 1.12925 1.21088 0.81270 0.89497 0.72814 1.90811 1.66190 1.36889 1.46846 1.86588 1.20467 1.33417 1.83162 1.22754 0.93926 0.81335 1.03564 1.19315 0.86481 0.85915 0.85917 1.90553 1.73847 1.26362 1.55259 1.41692 1.06726 1.06699 1.63851 1.19682 0.80278 0.94981 1.48298 0.87656 1.25301 1.01000 0.94498 0.96874 1.69609 1.36918 0.97647 1.49638 0.85861 0.81593 0.77268 0.79189 1.19761 1.20877 1.19757 1.21489 1.01413 0.90112 0.90398 1.20454 0.91111 0.98981 1.07909 0.92677 0.92651 0.92685 0.91805 0.91805 0.91563 0.91568 0.90654 0.90663 0.91668 0.91678 0.84700 0.84178 0.89484 0.89481 0.77148 0.91590 0.82908 0.84196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.57 9.91 37.16 0.37 -0.20 16 2 C -0.12 -0.49 5.93 -26.73 -0.16 -0.65 16 3 C -0.12 -0.47 5.22 -26.73 -0.14 -0.61 16 4 C -0.12 -0.61 5.58 -26.73 -0.15 -0.76 16 5 C 0.06 0.35 4.73 37.16 0.18 0.52 16 6 O -0.31 -2.92 10.12 -18.79 -0.19 -3.11 16 7 C 0.16 1.69 6.70 -39.00 -0.26 1.43 16 8 C -0.23 -2.19 9.01 -39.50 -0.36 -2.54 16 9 C -0.01 -0.15 9.59 -39.20 -0.38 -0.53 16 10 C -0.16 -2.24 5.87 -104.98 -0.62 -2.86 16 11 C 0.51 8.63 7.89 34.49 0.27 8.90 16 12 O -0.52 -9.47 16.13 -19.26 -0.31 -9.78 16 13 O -0.32 -6.16 9.00 -47.31 -0.43 -6.59 16 14 C 0.06 1.20 5.95 36.01 0.21 1.42 16 15 C 0.44 10.66 7.86 -10.98 -0.09 10.57 16 16 O -0.58 -15.99 16.08 -14.11 -0.23 -16.22 16 17 N -0.55 -14.04 5.29 -10.97 -0.06 -14.10 16 18 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 19 H 0.11 3.03 7.16 -52.49 -0.38 2.66 16 20 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 21 N -0.90 -24.16 13.05 55.50 0.72 -23.44 16 22 Si 0.93 20.77 29.55 -169.99 -5.02 15.75 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 26 C -0.02 -0.20 9.61 -39.21 -0.38 -0.58 16 27 C -0.17 -1.83 9.97 -39.50 -0.39 -2.22 16 28 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 34 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.35 7.64 -51.93 -0.40 -0.04 16 38 H 0.06 0.35 7.66 -51.93 -0.40 -0.04 16 39 H 0.14 0.94 6.28 -52.49 -0.33 0.61 16 40 H 0.14 1.51 7.64 -52.49 -0.40 1.11 16 41 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 42 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 43 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 44 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 45 H 0.15 2.01 7.60 -52.48 -0.40 1.61 16 46 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 397.34 15.07 5.99 5.99 Total: -1.00 -32.58 397.34 -8.48 -41.06 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -6.83 Total: 6.51 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: -2.12 Total: 3.94 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.67 Total: -37.54 kcal Atomic # 8 Polarization: -34.54 SS G_CDS: -1.15 Total: -35.70 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.58 -8.48 -41.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731235978.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.598 kcal (2) G-P(sol) polarization free energy of solvation -32.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds