Wall clock time and date at job start Tue Mar 31 2020 18:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.46819 * 2 1 4 4 C 1.53001 * 109.46815 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.47116 * 180.02562 * 4 3 2 6 6 O 1.42899 * 109.47265 * 180.02562 * 5 4 3 7 7 C 1.35694 * 117.00093 * 179.97438 * 6 5 4 8 8 C 1.39021 * 119.90499 * 0.27444 * 7 6 5 9 9 C 1.37679 * 120.09068 * 180.28089 * 8 7 6 10 10 C 1.39794 * 119.90398 * 359.43972 * 9 8 7 11 11 C 1.47473 * 120.08904 * 180.29757 * 10 9 8 12 12 O 1.21498 * 120.00032 * 0.02562 * 11 10 9 13 13 O 1.34752 * 119.99783 * 180.02562 * 11 10 9 14 14 C 1.45204 * 116.99850 * 180.02562 * 13 11 10 15 15 C 1.50701 * 109.46797 * 180.02562 * 14 13 11 16 16 O 1.21288 * 120.00302 * 0.02562 * 15 14 13 17 17 N 1.34782 * 119.99776 * 179.97438 * 15 14 13 18 18 C 1.37099 * 119.99896 * 180.02562 * 17 15 14 19 19 H 1.07994 * 120.00075 * 359.97438 * 18 17 15 20 20 C 1.38944 * 119.99839 * 180.02562 * 18 17 15 21 21 N 1.31418 * 120.00081 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00073 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47081 * 59.99930 * 22 20 18 24 24 H 1.48497 * 109.47118 * 179.97438 * 22 20 18 25 25 H 1.48491 * 109.46927 * 299.99576 * 22 20 18 26 26 C 1.39784 * 119.81736 * 0.28441 * 10 9 8 27 27 C 1.37681 * 119.90771 * 359.97438 * 26 10 9 28 28 H 1.08998 * 109.47685 * 59.99570 * 1 2 3 29 29 H 1.09000 * 109.47098 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46826 * 299.99830 * 1 2 3 31 31 H 1.09000 * 109.47285 * 240.00442 * 2 1 3 32 32 H 1.08992 * 109.47482 * 120.00031 * 2 1 3 33 33 H 1.08992 * 109.47429 * 60.00170 * 3 2 1 34 34 H 1.09000 * 109.46962 * 299.99975 * 3 2 1 35 35 H 1.09000 * 109.47152 * 59.99972 * 4 3 2 36 36 H 1.09000 * 109.47011 * 299.99548 * 4 3 2 37 37 H 1.09000 * 109.46683 * 59.99674 * 5 4 3 38 38 H 1.09000 * 109.46810 * 299.99669 * 5 4 3 39 39 H 1.07998 * 119.95278 * 359.97438 * 8 7 6 40 40 H 1.08002 * 120.04953 * 179.72504 * 9 8 7 41 41 H 1.09000 * 109.47171 * 300.00282 * 14 13 11 42 42 H 1.09001 * 109.46834 * 60.00652 * 14 13 11 43 43 H 0.97003 * 119.99677 * 0.02562 * 17 15 14 44 44 H 0.96998 * 119.99992 * 179.97438 * 21 20 18 45 45 H 1.08005 * 120.04680 * 180.02562 * 26 10 9 46 46 H 1.08000 * 119.95490 * 180.02562 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0800 2.8851 0.0000 6 8 5.5090 2.8852 -0.0012 7 6 6.1250 4.0942 -0.0014 8 6 5.3659 5.2589 0.0054 9 6 5.9869 6.4876 -0.0006 10 6 7.3828 6.5630 -0.0016 11 6 8.0523 7.8771 -0.0014 12 8 7.3905 8.8960 0.0002 13 8 9.3979 7.9476 -0.0029 14 6 9.9885 9.2741 -0.0020 15 6 11.4908 9.1551 -0.0046 16 8 12.0124 8.0601 -0.0074 17 7 12.2547 10.2655 -0.0047 18 6 13.6214 10.1573 -0.0076 19 1 14.0859 9.1823 -0.0093 20 6 14.4090 11.3020 -0.0073 21 7 13.8438 12.4884 -0.0047 22 14 16.2712 11.1546 -0.0119 23 1 16.7065 10.4200 -1.2268 24 1 16.8751 12.5112 -0.0114 25 1 16.7121 10.4155 1.1981 26 6 8.1423 5.3895 -0.0026 27 6 7.5133 4.1648 -0.0020 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6767 1.9564 0.8899 34 1 1.6766 1.9564 -0.8900 35 1 3.9329 0.9289 -0.8909 36 1 3.9337 0.9287 0.8892 37 1 3.7169 3.3984 0.8904 38 1 3.7163 3.3994 -0.8896 39 1 4.2876 5.1997 0.0103 40 1 5.3965 7.3920 0.0002 41 1 9.6657 9.8161 -0.8909 42 1 9.6680 9.8139 0.8891 43 1 11.8375 11.1412 -0.0028 44 1 14.3936 13.2875 -0.0041 45 1 9.2210 5.4434 -0.0030 46 1 8.0993 3.2576 -0.0023 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731235978.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:49 Heat of formation + Delta-G solvation = -174.223244 kcal Electronic energy + Delta-G solvation = -26622.868573 eV Core-core repulsion = 22476.567201 eV Total energy + Delta-G solvation = -4146.301372 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.82040 -41.05758 -40.03248 -38.57779 -37.44317 -36.67474 -36.03004 -33.42136 -32.81208 -32.20539 -31.42107 -29.83822 -27.36462 -26.66166 -24.82713 -24.19503 -22.51863 -21.97962 -21.84280 -21.42600 -20.07373 -19.42845 -18.98949 -18.06559 -17.71291 -17.44616 -17.41199 -16.79534 -16.56023 -16.10681 -15.86255 -15.73385 -15.63696 -15.07929 -14.72573 -14.62915 -14.46993 -14.39054 -14.02719 -13.99791 -13.59060 -13.55658 -13.42401 -13.30118 -12.93017 -12.60809 -12.48585 -12.38335 -12.12475 -12.04172 -11.88226 -11.85873 -11.75700 -11.66512 -11.65171 -11.56919 -11.38162 -10.51572 -10.19746 -10.11796 -9.43203 -8.52017 -6.02902 -0.37050 0.24388 1.33502 1.37555 1.41047 1.45067 1.56297 1.87094 2.03815 2.30249 2.66385 3.03780 3.13507 3.61305 3.65406 3.74997 3.89516 3.92308 4.03077 4.07032 4.14401 4.15204 4.21365 4.23639 4.26170 4.37076 4.44862 4.52012 4.64686 4.81241 4.85945 4.92034 4.97510 5.01018 5.06470 5.10109 5.20825 5.25367 5.30006 5.31799 5.37111 5.41844 5.49729 5.53978 5.88842 6.28078 6.45321 6.60841 7.02706 7.39576 7.93059 8.64819 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.042053 B = 0.001461 C = 0.001415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.665400 B =19160.604690 C =19784.613281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.125 4.125 3 C -0.113 4.113 4 C -0.116 4.116 5 C 0.046 3.954 6 O -0.318 6.318 7 C 0.170 3.830 8 C -0.215 4.215 9 C -0.011 4.011 10 C -0.186 4.186 11 C 0.509 3.491 12 O -0.534 6.534 13 O -0.339 6.339 14 C 0.072 3.928 15 C 0.437 3.563 16 O -0.616 6.616 17 N -0.557 5.557 18 C -0.341 4.341 19 H 0.085 0.915 20 C -0.007 4.007 21 N -0.915 5.915 22 Si 0.998 3.002 23 H -0.270 1.270 24 H -0.269 1.269 25 H -0.270 1.270 26 C -0.023 4.023 27 C -0.170 4.170 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.168 0.832 40 H 0.148 0.852 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.400 0.600 44 H 0.281 0.719 45 H 0.140 0.860 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.649 -19.914 0.029 33.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.163 4.163 3 C -0.151 4.151 4 C -0.154 4.154 5 C -0.028 4.028 6 O -0.231 6.231 7 C 0.123 3.877 8 C -0.233 4.233 9 C -0.029 4.029 10 C -0.187 4.187 11 C 0.356 3.644 12 O -0.426 6.426 13 O -0.254 6.254 14 C -0.005 4.005 15 C 0.224 3.776 16 O -0.503 6.503 17 N -0.194 5.194 18 C -0.470 4.470 19 H 0.103 0.897 20 C -0.208 4.208 21 N -0.555 5.555 22 Si 0.821 3.179 23 H -0.195 1.195 24 H -0.193 1.193 25 H -0.195 1.195 26 C -0.041 4.041 27 C -0.188 4.188 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.186 0.814 40 H 0.166 0.834 41 H 0.125 0.875 42 H 0.125 0.875 43 H 0.234 0.766 44 H 0.091 0.909 45 H 0.157 0.843 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -26.323 -20.322 0.026 33.255 hybrid contribution 0.741 1.042 -0.002 1.278 sum -25.582 -19.281 0.025 32.034 Atomic orbital electron populations 1.21784 0.95485 1.01896 1.02022 1.21515 0.96160 0.96391 1.02236 1.21507 0.92843 0.97670 1.03079 1.21555 0.96267 0.93912 1.03617 1.23240 0.76341 1.00143 1.03085 1.86041 1.23552 1.26436 1.87102 1.19424 0.92282 0.84833 0.91184 1.21421 1.01844 0.90490 1.09553 1.21168 0.91532 0.99170 0.91004 1.19032 0.94419 0.89419 1.15849 1.21607 0.80206 0.90607 0.71967 1.90786 1.66079 1.37698 1.48081 1.86591 1.22079 1.33025 1.83732 1.22540 0.90403 0.82196 1.05401 1.20061 0.88485 0.84920 0.84183 1.90518 1.75286 1.27768 1.56744 1.41720 1.06394 1.07276 1.64001 1.19710 0.81629 0.94773 1.50846 0.89703 1.26118 1.05301 0.93805 0.95553 1.69670 1.38614 0.98169 1.49068 0.84919 0.76022 0.77845 0.79150 1.19481 1.19341 1.19469 1.21379 1.00863 0.90656 0.91209 1.20571 0.91943 0.98691 1.07605 0.92554 0.92598 0.92561 0.91954 0.91953 0.91049 0.91058 0.91041 0.91047 0.90319 0.90340 0.81433 0.83393 0.87545 0.87534 0.76561 0.90942 0.84255 0.82905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 71.98 0.71 -0.21 16 2 C -0.13 -0.79 5.93 30.60 0.18 -0.61 16 3 C -0.11 -0.65 5.22 30.60 0.16 -0.49 16 4 C -0.12 -0.93 5.58 30.60 0.17 -0.75 16 5 C 0.05 0.44 4.73 71.98 0.34 0.78 16 6 O -0.32 -5.21 10.12 -90.13 -0.91 -6.12 16 7 C 0.17 3.17 6.70 22.64 0.15 3.32 16 8 C -0.21 -3.57 9.01 22.33 0.20 -3.37 16 9 C -0.01 -0.23 9.59 22.51 0.22 -0.01 16 10 C -0.19 -5.14 5.87 -20.09 -0.12 -5.26 16 11 C 0.51 17.39 7.89 70.26 0.55 17.94 16 12 O -0.53 -19.42 16.13 19.84 0.32 -19.10 16 13 O -0.34 -13.24 9.00 -50.24 -0.45 -13.69 16 14 C 0.07 2.81 5.95 71.24 0.42 3.24 16 15 C 0.44 21.74 7.86 87.66 0.69 22.43 16 16 O -0.62 -35.44 16.08 15.74 0.25 -35.19 16 17 N -0.56 -28.91 5.29 -306.99 -1.62 -30.54 16 18 C -0.34 -19.29 9.68 84.04 0.81 -18.47 16 19 H 0.09 5.07 7.16 -2.91 -0.02 5.05 16 20 C -0.01 -0.37 5.50 84.92 0.47 0.10 16 21 N -0.92 -48.90 13.05 21.66 0.28 -48.62 16 22 Si 1.00 42.22 29.55 68.60 2.03 44.25 16 23 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 24 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 26 C -0.02 -0.58 9.61 22.51 0.22 -0.37 16 27 C -0.17 -3.58 9.97 22.32 0.22 -3.36 16 28 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.08 0.57 7.64 -2.39 -0.02 0.56 16 38 H 0.08 0.57 7.66 -2.39 -0.02 0.56 16 39 H 0.17 1.64 6.28 -2.91 -0.02 1.62 16 40 H 0.15 2.93 7.64 -2.91 -0.02 2.91 16 41 H 0.11 3.74 8.14 -2.39 -0.02 3.73 16 42 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 43 H 0.40 19.58 7.90 -92.71 -0.73 18.85 16 44 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 45 H 0.14 3.88 7.60 -2.91 -0.02 3.86 16 46 H 0.15 2.73 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -70.34 397.34 5.56 -64.78 By element: Atomic # 1 Polarization: 29.05 SS G_CDS: 0.26 Total: 29.31 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: 5.40 Total: 14.91 kcal Atomic # 7 Polarization: -77.81 SS G_CDS: -1.34 Total: -79.15 kcal Atomic # 8 Polarization: -73.31 SS G_CDS: -0.79 Total: -74.10 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -70.34 5.56 -64.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731235978.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.443 kcal (2) G-P(sol) polarization free energy of solvation -70.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds