Wall clock time and date at job start Tue Mar 31 2020 18:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38274 * 119.94271 * 59.72515 * 4 2 1 6 6 C 1.38140 * 120.05195 * 179.72692 * 5 4 2 7 7 C 1.38729 * 119.94604 * 0.56641 * 6 5 4 8 8 O 1.35905 * 120.05703 * 179.68643 * 7 6 5 9 9 C 1.42902 * 116.99941 * 0.02562 * 8 7 6 10 10 C 1.53001 * 109.46925 * 180.02562 * 9 8 7 11 11 C 1.50706 * 109.46640 * 180.02562 * 10 9 8 12 12 O 1.20816 * 120.00051 * 0.02562 * 11 10 9 13 13 O 1.34232 * 119.99283 * 180.02562 * 11 10 9 14 14 C 1.45203 * 116.99531 * 180.02562 * 13 11 10 15 15 C 1.50695 * 109.47291 * 179.97438 * 14 13 11 16 16 O 1.21293 * 119.99621 * 359.97438 * 15 14 13 17 17 N 1.34776 * 120.00478 * 180.02562 * 15 14 13 18 18 C 1.37095 * 120.00300 * 180.02562 * 17 15 14 19 19 H 1.08005 * 120.00007 * 359.97438 * 18 17 15 20 20 C 1.38943 * 119.99962 * 179.97438 * 18 17 15 21 21 N 1.31412 * 119.99960 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 120.00047 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47272 * 90.00245 * 22 20 18 24 24 H 1.48507 * 109.47199 * 210.00030 * 22 20 18 25 25 H 1.48492 * 109.47188 * 329.99740 * 22 20 18 26 26 C 1.38738 * 119.88842 * 359.70719 * 7 6 5 27 27 C 1.38139 * 119.94262 * 359.97438 * 26 7 6 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 30 30 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 31 31 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 32 32 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 33 33 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 35 35 H 1.08000 * 119.96815 * 359.97438 * 5 4 2 36 36 H 1.08005 * 120.02747 * 180.24921 * 6 5 4 37 37 H 1.08994 * 109.47571 * 300.00718 * 9 8 7 38 38 H 1.09006 * 109.46748 * 60.00351 * 9 8 7 39 39 H 1.09002 * 109.47275 * 300.00336 * 10 9 8 40 40 H 1.08993 * 109.46955 * 60.00321 * 10 9 8 41 41 H 1.08998 * 109.46924 * 299.99940 * 14 13 11 42 42 H 1.09009 * 109.47280 * 59.99912 * 14 13 11 43 43 H 0.97008 * 119.99463 * 359.97438 * 17 15 14 44 44 H 0.97008 * 120.00153 * 179.97438 * 21 20 18 45 45 H 1.07997 * 120.02456 * 179.97438 * 26 7 6 46 46 H 1.07998 * 119.97261 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6929 -0.2402 -2.4857 6 6 2.1567 -0.8864 -3.6152 7 6 2.9540 -2.0146 -3.4893 8 8 3.4063 -2.6558 -4.5990 9 6 3.0225 -2.1126 -5.8638 10 6 3.6212 -2.9623 -6.9865 11 6 3.2168 -2.3891 -8.3204 12 8 2.5216 -1.4021 -8.3680 13 8 3.6292 -2.9752 -9.4554 14 6 3.2019 -2.3684 -10.7034 15 6 3.7573 -3.1568 -11.8614 16 8 4.4460 -4.1337 -11.6551 17 7 3.4898 -2.7758 -13.1262 18 6 3.9947 -3.4934 -14.1796 19 1 4.6072 -4.3638 -13.9959 20 6 3.7184 -3.1009 -15.4835 21 7 4.2028 -3.7884 -16.4933 22 14 2.6583 -1.5960 -15.8012 23 1 3.5220 -0.3909 -15.8853 24 1 1.9239 -1.7688 -17.0803 25 1 1.6863 -1.4318 -14.6907 26 6 3.2885 -2.4877 -2.2287 27 6 2.8276 -1.8341 -1.1023 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1299 1.4426 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.0679 0.6351 -2.5831 36 1 1.8946 -0.5164 -4.5955 37 1 1.9356 -2.1162 -5.9460 38 1 3.3897 -1.0896 -5.9464 39 1 4.7081 -2.9591 -6.9045 40 1 3.2536 -3.9850 -6.9037 41 1 2.1130 -2.3676 -10.7530 42 1 3.5686 -1.3431 -10.7533 43 1 2.9393 -1.9943 -13.2911 44 1 4.0096 -3.5147 -17.4036 45 1 3.9087 -3.3660 -2.1281 46 1 3.0880 -2.2017 -0.1208 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731244106.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:48 Heat of formation + Delta-G solvation = -145.013153 kcal Electronic energy + Delta-G solvation = -26822.551531 eV Core-core repulsion = 22677.516804 eV Total energy + Delta-G solvation = -4145.034727 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.77752 -40.36740 -38.60834 -38.30554 -36.38753 -35.23118 -34.09336 -32.53792 -31.82278 -31.33375 -29.27279 -28.59299 -27.55662 -25.45165 -24.28213 -23.66622 -22.36943 -20.68525 -20.41915 -19.68324 -18.79936 -18.62558 -17.55254 -17.05984 -16.53157 -16.29359 -16.10988 -15.76164 -15.48806 -14.93401 -14.73826 -14.64890 -14.49992 -13.93488 -13.86882 -13.71866 -13.57350 -13.33920 -13.06985 -12.92588 -12.72404 -12.47481 -12.33607 -12.25966 -12.09921 -12.04428 -11.57941 -11.50144 -11.29087 -11.19137 -10.98102 -10.91738 -10.67863 -10.66142 -10.60969 -10.07330 -9.70340 -9.32513 -8.70428 -8.38836 -8.31896 -6.41462 -3.94579 1.01921 1.08919 2.08407 2.18251 2.96514 3.01139 3.09337 3.16875 3.41590 3.52034 4.01559 4.23393 4.28258 4.35338 4.45135 4.55610 4.56893 4.70010 4.78151 4.86026 4.97125 5.01006 5.03596 5.08285 5.12341 5.20260 5.25689 5.33254 5.33386 5.41076 5.44530 5.46529 5.49727 5.55717 5.63728 5.69349 5.79709 5.81162 5.97778 6.06319 6.31426 6.40034 6.44164 7.07227 7.41504 7.65021 7.98217 8.45060 8.81261 9.27254 9.62522 10.70738 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.030518 B = 0.001520 C = 0.001463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.261805 B =18415.522546 C =19131.119824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.052 4.052 3 C -0.145 4.145 4 C -0.117 4.117 5 C -0.074 4.074 6 C -0.204 4.204 7 C 0.129 3.871 8 O -0.314 6.314 9 C 0.073 3.927 10 C -0.114 4.114 11 C 0.468 3.532 12 O -0.517 6.517 13 O -0.320 6.320 14 C 0.058 3.942 15 C 0.446 3.554 16 O -0.557 6.557 17 N -0.578 5.578 18 C -0.309 4.309 19 H 0.123 0.877 20 C 0.046 3.954 21 N -0.874 5.874 22 Si 0.879 3.121 23 H -0.269 1.269 24 H -0.274 1.274 25 H -0.268 1.268 26 C -0.149 4.149 27 C -0.080 4.080 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.123 0.877 36 H 0.131 0.869 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.373 0.627 44 H 0.276 0.724 45 H 0.131 0.869 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.832 9.709 32.333 34.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.071 4.071 3 C -0.202 4.202 4 C -0.117 4.117 5 C -0.092 4.092 6 C -0.223 4.223 7 C 0.084 3.916 8 O -0.228 6.228 9 C -0.003 4.003 10 C -0.151 4.151 11 C 0.311 3.689 12 O -0.406 6.406 13 O -0.234 6.234 14 C -0.019 4.019 15 C 0.231 3.769 16 O -0.438 6.438 17 N -0.219 5.219 18 C -0.438 4.438 19 H 0.140 0.860 20 C -0.158 4.158 21 N -0.513 5.513 22 Si 0.705 3.295 23 H -0.194 1.194 24 H -0.199 1.199 25 H -0.194 1.194 26 C -0.168 4.168 27 C -0.098 4.098 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.141 0.859 36 H 0.148 0.852 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.206 0.794 44 H 0.086 0.914 45 H 0.149 0.851 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.417 9.120 32.138 34.018 hybrid contribution -1.049 1.457 -0.768 1.953 sum -7.466 10.578 31.370 33.937 Atomic orbital electron populations 1.21873 0.94455 1.02036 1.01883 1.20055 0.95837 0.95933 0.95241 1.21871 1.01279 0.95209 1.01881 1.19772 1.00250 0.97035 0.94663 1.20766 0.98199 0.98943 0.91318 1.21338 1.02963 0.97853 1.00148 1.18971 0.94153 0.91783 0.86678 1.85968 1.70960 1.53081 1.12804 1.22446 1.00304 0.97276 0.80238 1.21046 1.05090 1.02088 0.86911 1.23225 0.77114 0.81787 0.86790 1.90670 1.35994 1.25680 1.88286 1.86551 1.68652 1.54307 1.13933 1.22788 1.00553 0.97359 0.81242 1.19174 0.86776 0.87884 0.83045 1.90612 1.40952 1.28219 1.84049 1.42032 1.47146 1.27633 1.05045 1.19432 1.30041 1.11275 0.83008 0.85976 1.25033 0.97624 0.98033 0.95128 1.69615 1.43703 1.38920 0.99071 0.86679 0.80717 0.83108 0.78986 1.19402 1.19919 1.19378 1.20429 1.04404 1.02525 0.89394 1.20853 0.96472 0.94559 0.97897 0.92508 0.92457 0.92483 0.90567 0.92453 0.92507 0.92492 0.85906 0.85158 0.90781 0.90770 0.86166 0.86165 0.89291 0.89286 0.79385 0.91359 0.85097 0.85491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.00 37.16 0.33 -0.42 16 2 C -0.05 -0.30 3.09 -91.77 -0.28 -0.58 16 3 C -0.15 -0.76 9.01 37.16 0.33 -0.42 16 4 C -0.12 -0.87 4.78 -104.60 -0.50 -1.37 16 5 C -0.07 -0.60 8.70 -39.60 -0.34 -0.94 16 6 C -0.20 -1.88 9.04 -39.44 -0.36 -2.23 16 7 C 0.13 1.29 6.69 -39.22 -0.26 1.03 16 8 O -0.31 -3.27 10.14 -19.44 -0.20 -3.46 16 9 C 0.07 0.70 4.03 37.16 0.15 0.85 16 10 C -0.11 -1.13 6.18 -27.88 -0.17 -1.30 16 11 C 0.47 6.43 7.96 36.01 0.29 6.71 16 12 O -0.52 -7.85 15.73 -18.74 -0.29 -8.14 16 13 O -0.32 -5.44 9.76 -45.91 -0.45 -5.89 16 14 C 0.06 1.01 5.94 36.00 0.21 1.22 16 15 C 0.45 10.17 7.86 -10.99 -0.09 10.09 16 16 O -0.56 -15.13 16.08 -14.12 -0.23 -15.36 16 17 N -0.58 -13.55 5.09 -10.97 -0.06 -13.61 16 18 C -0.31 -8.59 10.16 -14.94 -0.15 -8.74 16 19 H 0.12 3.87 7.39 -52.48 -0.39 3.48 16 20 C 0.05 1.23 5.50 -17.47 -0.10 1.13 16 21 N -0.87 -24.94 13.96 55.50 0.77 -24.17 16 22 Si 0.88 18.85 27.74 -169.99 -4.71 14.13 16 23 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 24 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 25 H -0.27 -5.24 6.52 56.52 0.37 -4.87 16 26 C -0.15 -1.31 9.99 -39.43 -0.39 -1.70 16 27 C -0.08 -0.60 9.66 -39.61 -0.38 -0.98 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.30 7.37 -51.93 -0.38 -0.08 16 31 H 0.08 0.38 7.87 -51.93 -0.41 -0.03 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.30 7.40 -51.93 -0.38 -0.08 16 35 H 0.12 0.81 7.09 -52.49 -0.37 0.44 16 36 H 0.13 1.11 6.30 -52.48 -0.33 0.78 16 37 H 0.07 0.70 7.62 -51.93 -0.40 0.30 16 38 H 0.07 0.70 7.62 -51.93 -0.40 0.31 16 39 H 0.12 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.12 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.09 1.36 8.13 -51.93 -0.42 0.93 16 42 H 0.09 1.35 8.14 -51.92 -0.42 0.92 16 43 H 0.37 7.57 5.76 -40.82 -0.24 7.34 16 44 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 45 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 46 H 0.13 0.68 7.94 -52.49 -0.42 0.26 16 LS Contribution 390.67 15.07 5.89 5.89 Total: -1.00 -33.49 390.67 -7.67 -41.16 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -6.68 Total: 7.12 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: -1.71 Total: 2.32 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.72 Total: -37.78 kcal Atomic # 8 Polarization: -31.68 SS G_CDS: -1.17 Total: -32.85 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -4.71 Total: 14.13 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.49 -7.67 -41.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731244106.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.857 kcal (2) G-P(sol) polarization free energy of solvation -33.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds