Wall clock time and date at job start Tue Mar 31 2020 18:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38274 * 119.94271 * 59.72515 * 4 2 1 6 6 C 1.38140 * 120.05195 * 179.72692 * 5 4 2 7 7 C 1.38729 * 119.94604 * 0.56641 * 6 5 4 8 8 O 1.35905 * 120.05703 * 179.68643 * 7 6 5 9 9 C 1.42902 * 116.99941 * 0.02562 * 8 7 6 10 10 C 1.53001 * 109.46925 * 180.02562 * 9 8 7 11 11 C 1.50706 * 109.46640 * 180.02562 * 10 9 8 12 12 O 1.20816 * 120.00051 * 0.02562 * 11 10 9 13 13 O 1.34232 * 119.99283 * 180.02562 * 11 10 9 14 14 C 1.45203 * 116.99531 * 180.02562 * 13 11 10 15 15 C 1.50695 * 109.47291 * 179.97438 * 14 13 11 16 16 O 1.21293 * 119.99621 * 359.97438 * 15 14 13 17 17 N 1.34776 * 120.00478 * 180.02562 * 15 14 13 18 18 C 1.37095 * 120.00300 * 180.02562 * 17 15 14 19 19 H 1.08005 * 120.00007 * 359.97438 * 18 17 15 20 20 C 1.38943 * 119.99962 * 179.97438 * 18 17 15 21 21 N 1.31412 * 119.99960 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 120.00047 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47272 * 90.00245 * 22 20 18 24 24 H 1.48507 * 109.47199 * 210.00030 * 22 20 18 25 25 H 1.48492 * 109.47188 * 329.99740 * 22 20 18 26 26 C 1.38738 * 119.88842 * 359.70719 * 7 6 5 27 27 C 1.38139 * 119.94262 * 359.97438 * 26 7 6 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 30 30 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 31 31 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 32 32 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 33 33 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 35 35 H 1.08000 * 119.96815 * 359.97438 * 5 4 2 36 36 H 1.08005 * 120.02747 * 180.24921 * 6 5 4 37 37 H 1.08994 * 109.47571 * 300.00718 * 9 8 7 38 38 H 1.09006 * 109.46748 * 60.00351 * 9 8 7 39 39 H 1.09002 * 109.47275 * 300.00336 * 10 9 8 40 40 H 1.08993 * 109.46955 * 60.00321 * 10 9 8 41 41 H 1.08998 * 109.46924 * 299.99940 * 14 13 11 42 42 H 1.09009 * 109.47280 * 59.99912 * 14 13 11 43 43 H 0.97008 * 119.99463 * 359.97438 * 17 15 14 44 44 H 0.97008 * 120.00153 * 179.97438 * 21 20 18 45 45 H 1.07997 * 120.02456 * 179.97438 * 26 7 6 46 46 H 1.07998 * 119.97261 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6929 -0.2402 -2.4857 6 6 2.1567 -0.8864 -3.6152 7 6 2.9540 -2.0146 -3.4893 8 8 3.4063 -2.6558 -4.5990 9 6 3.0225 -2.1126 -5.8638 10 6 3.6212 -2.9623 -6.9865 11 6 3.2168 -2.3891 -8.3204 12 8 2.5216 -1.4021 -8.3680 13 8 3.6292 -2.9752 -9.4554 14 6 3.2019 -2.3684 -10.7034 15 6 3.7573 -3.1568 -11.8614 16 8 4.4460 -4.1337 -11.6551 17 7 3.4898 -2.7758 -13.1262 18 6 3.9947 -3.4934 -14.1796 19 1 4.6072 -4.3638 -13.9959 20 6 3.7184 -3.1009 -15.4835 21 7 4.2028 -3.7884 -16.4933 22 14 2.6583 -1.5960 -15.8012 23 1 3.5220 -0.3909 -15.8853 24 1 1.9239 -1.7688 -17.0803 25 1 1.6863 -1.4318 -14.6907 26 6 3.2885 -2.4877 -2.2287 27 6 2.8276 -1.8341 -1.1023 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1299 1.4426 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.0679 0.6351 -2.5831 36 1 1.8946 -0.5164 -4.5955 37 1 1.9356 -2.1162 -5.9460 38 1 3.3897 -1.0896 -5.9464 39 1 4.7081 -2.9591 -6.9045 40 1 3.2536 -3.9850 -6.9037 41 1 2.1130 -2.3676 -10.7530 42 1 3.5686 -1.3431 -10.7533 43 1 2.9393 -1.9943 -13.2911 44 1 4.0096 -3.5147 -17.4036 45 1 3.9087 -3.3660 -2.1281 46 1 3.0880 -2.2017 -0.1208 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731244106.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:47 Heat of formation + Delta-G solvation = -164.811695 kcal Electronic energy + Delta-G solvation = -26823.410061 eV Core-core repulsion = 22677.516804 eV Total energy + Delta-G solvation = -4145.893257 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.83445 -41.16681 -40.21580 -39.14830 -37.65442 -36.09944 -35.76226 -33.88436 -33.35082 -31.95217 -30.35899 -29.63425 -27.94502 -26.79604 -25.69583 -24.25292 -23.10505 -21.69917 -21.55582 -20.93315 -20.53921 -19.58881 -18.61775 -18.10516 -17.88091 -17.24822 -17.07476 -17.05161 -16.53373 -16.32632 -15.88056 -15.48052 -15.25716 -15.18681 -14.69801 -14.64232 -14.50260 -14.24435 -14.23800 -14.17172 -13.74382 -13.68976 -13.54082 -13.12027 -13.01074 -12.81230 -12.73063 -12.46954 -12.07591 -12.04430 -12.01320 -11.90957 -11.78762 -11.66233 -11.61682 -11.59503 -11.43704 -10.62601 -10.35255 -9.94505 -9.03400 -8.46952 -6.10415 0.39923 0.45436 1.00696 1.12542 1.29738 1.33000 1.43877 1.74609 2.19142 2.24545 2.79488 2.87036 3.07486 3.45230 3.72433 3.79953 3.83032 3.85867 3.94431 3.97763 4.10016 4.12777 4.17462 4.26356 4.36719 4.43859 4.48068 4.58698 4.59193 4.65502 4.80775 4.83550 4.98527 5.02916 5.10944 5.14812 5.23520 5.35014 5.38278 5.41900 5.46544 5.47088 5.75196 5.84232 5.84497 6.37498 6.43827 6.56028 6.76280 7.24446 7.76483 8.69629 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.030518 B = 0.001520 C = 0.001463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.261805 B =18415.522546 C =19131.119824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.051 4.051 3 C -0.144 4.144 4 C -0.118 4.118 5 C -0.081 4.081 6 C -0.215 4.215 7 C 0.106 3.894 8 O -0.323 6.323 9 C 0.077 3.923 10 C -0.107 4.107 11 C 0.473 3.527 12 O -0.529 6.529 13 O -0.343 6.343 14 C 0.068 3.932 15 C 0.447 3.553 16 O -0.609 6.609 17 N -0.575 5.575 18 C -0.336 4.336 19 H 0.061 0.939 20 C -0.006 4.006 21 N -0.925 5.925 22 Si 0.962 3.038 23 H -0.255 1.255 24 H -0.272 1.272 25 H -0.231 1.231 26 C -0.159 4.159 27 C -0.083 4.083 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.135 0.865 36 H 0.132 0.868 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.393 0.607 44 H 0.282 0.718 45 H 0.138 0.862 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.720 12.324 34.373 37.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.069 4.069 3 C -0.201 4.201 4 C -0.118 4.118 5 C -0.099 4.099 6 C -0.233 4.233 7 C 0.061 3.939 8 O -0.238 6.238 9 C 0.002 3.998 10 C -0.144 4.144 11 C 0.317 3.683 12 O -0.419 6.419 13 O -0.259 6.259 14 C -0.009 4.009 15 C 0.234 3.766 16 O -0.494 6.494 17 N -0.217 5.217 18 C -0.464 4.464 19 H 0.079 0.921 20 C -0.207 4.207 21 N -0.565 5.565 22 Si 0.781 3.219 23 H -0.179 1.179 24 H -0.197 1.197 25 H -0.154 1.154 26 C -0.178 4.178 27 C -0.100 4.100 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.153 0.847 36 H 0.150 0.850 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.229 0.771 44 H 0.092 0.908 45 H 0.156 0.844 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -8.319 11.753 34.210 37.117 hybrid contribution -0.399 0.563 -1.292 1.465 sum -8.718 12.315 32.918 36.212 Atomic orbital electron populations 1.21865 0.94077 1.01864 1.02347 1.20099 0.96096 0.96065 0.94682 1.21863 1.00959 0.94980 1.02341 1.20060 0.99632 0.96907 0.95200 1.20978 0.98301 0.99316 0.91342 1.21453 1.03222 0.97962 1.00703 1.19213 0.95225 0.92538 0.86879 1.85930 1.71339 1.53466 1.13039 1.22374 1.00240 0.97113 0.80055 1.21091 1.05984 1.02535 0.84770 1.23771 0.76426 0.81393 0.86709 1.90663 1.36636 1.26300 1.88299 1.86551 1.69475 1.55277 1.14553 1.22625 1.01764 0.97063 0.79451 1.20220 0.85076 0.87191 0.84147 1.90588 1.43018 1.30709 1.85077 1.41807 1.47474 1.27964 1.04457 1.19016 1.31189 1.10969 0.85252 0.92137 1.26086 0.98727 1.01981 0.93863 1.69784 1.45296 1.41445 0.99931 0.85414 0.79001 0.77549 0.79928 1.17931 1.19699 1.15416 1.20662 1.04665 1.03000 0.89428 1.21157 0.95977 0.94366 0.98539 0.92991 0.91328 0.92725 0.89583 0.91323 0.92992 0.92743 0.84702 0.85014 0.90787 0.90776 0.84768 0.84770 0.86414 0.86328 0.77054 0.90805 0.84386 0.83314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.00 71.98 0.65 -0.59 16 2 C -0.05 -0.48 3.09 -11.54 -0.04 -0.51 16 3 C -0.14 -1.24 9.01 71.98 0.65 -0.59 16 4 C -0.12 -1.58 4.78 -19.85 -0.09 -1.68 16 5 C -0.08 -1.23 8.70 22.26 0.19 -1.03 16 6 C -0.21 -3.81 9.04 22.36 0.20 -3.60 16 7 C 0.11 2.06 6.69 22.51 0.15 2.21 16 8 O -0.32 -6.47 10.14 -92.48 -0.94 -7.41 16 9 C 0.08 1.40 4.03 71.98 0.29 1.69 16 10 C -0.11 -1.95 6.18 29.85 0.18 -1.76 16 11 C 0.47 12.10 7.96 71.24 0.57 12.67 16 12 O -0.53 -14.84 15.73 21.99 0.35 -14.50 16 13 O -0.34 -11.17 9.76 -45.08 -0.44 -11.61 16 14 C 0.07 2.20 5.94 71.23 0.42 2.62 16 15 C 0.45 20.32 7.86 87.66 0.69 21.01 16 16 O -0.61 -34.30 16.08 15.73 0.25 -34.05 16 17 N -0.58 -26.70 5.09 -306.99 -1.56 -28.26 16 18 C -0.34 -19.30 10.16 84.04 0.85 -18.45 16 19 H 0.06 4.14 7.39 -2.91 -0.02 4.12 16 20 C -0.01 -0.35 5.50 84.92 0.47 0.12 16 21 N -0.93 -54.42 13.96 21.66 0.30 -54.12 16 22 Si 0.96 37.51 27.74 68.60 1.90 39.41 16 23 H -0.26 -9.42 7.11 99.48 0.71 -8.72 16 24 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 25 H -0.23 -7.56 6.52 99.48 0.65 -6.91 16 26 C -0.16 -2.65 9.99 22.37 0.22 -2.43 16 27 C -0.08 -1.12 9.66 22.25 0.22 -0.90 16 28 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.05 0.49 7.37 -2.39 -0.02 0.48 16 31 H 0.09 0.65 7.87 -2.39 -0.02 0.63 16 32 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.05 0.49 7.40 -2.39 -0.02 0.48 16 35 H 0.14 1.61 7.09 -2.91 -0.02 1.58 16 36 H 0.13 2.18 6.30 -2.91 -0.02 2.16 16 37 H 0.07 1.32 7.62 -2.39 -0.02 1.30 16 38 H 0.07 1.32 7.62 -2.38 -0.02 1.31 16 39 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.12 3.18 8.13 -2.39 -0.02 3.16 16 42 H 0.12 3.18 8.14 -2.38 -0.02 3.16 16 43 H 0.39 14.88 5.76 -92.70 -0.53 14.34 16 44 H 0.28 15.11 8.31 -92.70 -0.77 14.34 16 45 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 46 H 0.15 1.27 7.94 -2.91 -0.02 1.25 16 Total: -1.00 -76.89 390.67 5.89 -71.00 By element: Atomic # 1 Polarization: 30.38 SS G_CDS: 0.40 Total: 30.78 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: 5.63 Total: 8.75 kcal Atomic # 7 Polarization: -81.11 SS G_CDS: -1.26 Total: -82.38 kcal Atomic # 8 Polarization: -66.79 SS G_CDS: -0.78 Total: -67.57 kcal Atomic # 14 Polarization: 37.51 SS G_CDS: 1.90 Total: 39.41 kcal Total: -76.89 5.89 -71.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731244106.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.814 kcal (2) G-P(sol) polarization free energy of solvation -76.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds