Wall clock time and date at job start Tue Mar 31 2020 19:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47304 * 2 1 4 4 C 1.53000 * 109.47529 * 120.00317 * 2 1 3 5 5 O 1.42901 * 109.47062 * 174.99509 * 4 2 1 6 6 C 1.35641 * 116.99857 * 179.97438 * 5 4 2 7 7 C 1.38712 * 120.15383 * 359.97438 * 6 5 4 8 8 C 1.38049 * 120.08819 * 179.97438 * 7 6 5 9 9 C 1.38565 * 120.40407 * 0.02562 * 8 7 6 10 10 C 1.37759 * 120.30656 * 0.02562 * 9 8 7 11 11 C 1.39766 * 119.90515 * 359.97438 * 10 9 8 12 12 C 1.47400 * 120.20000 * 180.02562 * 11 10 9 13 13 O 1.21509 * 120.00544 * 179.97438 * 12 11 10 14 14 O 1.34754 * 119.99543 * 359.97438 * 12 11 10 15 15 C 1.45203 * 116.99607 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.47044 * 180.02562 * 15 14 12 17 17 O 1.21281 * 119.99901 * 359.97438 * 16 15 14 18 18 N 1.34772 * 120.00101 * 179.97438 * 16 15 14 19 19 C 1.46502 * 119.99921 * 179.97438 * 18 16 15 20 20 C 1.50700 * 109.46885 * 180.02562 * 19 18 16 21 21 H 1.07996 * 120.00411 * 359.97438 * 20 19 18 22 22 C 1.37880 * 119.99874 * 180.02562 * 20 19 18 23 23 N 1.31518 * 120.00094 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99972 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47290 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47231 * 119.99939 * 24 22 20 27 27 H 1.48495 * 109.47237 * 239.99726 * 24 22 20 28 28 H 1.09004 * 109.46500 * 299.99604 * 1 2 3 29 29 H 1.09001 * 109.47414 * 59.99557 * 1 2 3 30 30 H 1.09001 * 109.47130 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46988 * 240.00339 * 2 1 3 32 32 H 1.09001 * 109.47246 * 300.00546 * 3 2 1 33 33 H 1.08999 * 109.47378 * 60.00425 * 3 2 1 34 34 H 1.08996 * 109.47352 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.46665 * 54.99834 * 4 2 1 36 36 H 1.08997 * 109.46847 * 294.99670 * 4 2 1 37 37 H 1.08006 * 119.95568 * 0.02708 * 7 6 5 38 38 H 1.08001 * 119.79771 * 180.27728 * 8 7 6 39 39 H 1.08001 * 119.84038 * 179.97438 * 9 8 7 40 40 H 1.08006 * 120.04375 * 180.02562 * 10 9 8 41 41 H 1.08999 * 109.46711 * 299.99783 * 15 14 12 42 42 H 1.08993 * 109.47522 * 59.99825 * 15 14 12 43 43 H 0.97001 * 120.00024 * 359.97438 * 18 16 15 44 44 H 1.08999 * 109.47174 * 299.99488 * 19 18 16 45 45 H 1.08993 * 109.47299 * 59.99677 * 19 18 16 46 46 H 0.97001 * 119.99909 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 8 3.4642 -0.8239 1.1918 6 6 4.0795 -1.4413 2.2311 7 6 3.3313 -1.9395 3.2875 8 6 3.9588 -2.5680 4.3443 9 6 5.3375 -2.7061 4.3595 10 6 6.0967 -2.2166 3.3195 11 6 5.4747 -1.5779 2.2431 12 6 6.2807 -1.0522 1.1265 13 8 5.7362 -0.4980 0.1923 14 8 7.6215 -1.1862 1.1420 15 6 8.3511 -0.6441 0.0096 16 6 9.8263 -0.8859 0.2003 17 8 10.2236 -1.4583 1.1930 18 7 10.7041 -0.4661 -0.7323 19 6 12.1382 -0.7007 -0.5466 20 6 12.8955 -0.1382 -1.7218 21 1 12.3619 0.3452 -2.5267 22 6 14.2695 -0.2417 -1.7700 23 7 14.9194 -0.8309 -0.7900 24 14 15.2082 0.4549 -3.2271 25 1 14.2521 1.0628 -4.1870 26 1 16.1596 1.4919 -2.7531 27 1 15.9592 -0.6357 -3.8993 28 1 -0.3632 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.6766 1.9563 -0.8899 33 1 1.6768 1.9563 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6054 -1.7198 1.2950 36 1 1.7518 -0.1584 2.1369 37 1 2.2561 -1.8362 3.2828 38 1 3.3713 -2.9582 5.1622 39 1 5.8190 -3.1991 5.1911 40 1 7.1710 -2.3269 3.3356 41 1 8.0183 -1.1342 -0.9053 42 1 8.1647 0.4273 -0.0636 43 1 10.3863 -0.0086 -1.5264 44 1 12.4712 -0.2102 0.3681 45 1 12.3246 -1.7720 -0.4728 46 1 15.8861 -0.9034 -0.8238 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731377800.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:12 Heat of formation + Delta-G solvation = -146.969311 kcal Electronic energy + Delta-G solvation = -27844.164590 eV Core-core repulsion = 23699.045037 eV Total energy + Delta-G solvation = -4145.119553 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.94656 -39.88302 -38.60731 -37.94339 -36.15572 -35.53102 -34.21832 -32.39698 -31.87347 -30.30000 -29.10416 -27.51075 -27.07378 -26.62381 -24.38980 -22.73790 -22.37972 -21.19193 -20.39125 -19.89468 -18.67110 -17.77142 -17.40328 -16.72962 -16.54781 -16.31064 -15.96958 -15.59577 -15.11288 -15.01848 -14.81744 -14.64422 -14.46038 -14.30604 -14.03673 -13.48165 -13.06539 -13.01196 -12.92390 -12.65448 -12.52425 -12.48791 -12.04107 -11.95843 -11.72666 -11.69221 -11.61485 -11.42775 -11.05764 -10.98267 -10.97517 -10.92937 -10.58098 -10.38636 -10.33416 -9.40859 -9.40809 -9.14006 -8.77283 -8.58280 -7.96369 -6.18630 -4.25728 0.49958 1.08658 2.48537 2.50797 2.77045 3.21778 3.23371 3.30499 3.33676 3.52453 4.01151 4.27520 4.34115 4.39331 4.49087 4.51383 4.65205 4.75090 4.80671 4.96333 5.00943 5.02626 5.17018 5.17642 5.18752 5.27821 5.31425 5.32527 5.39125 5.47019 5.55036 5.55524 5.69102 5.80459 5.89522 5.95231 6.06198 6.12830 6.39264 6.42542 7.04332 7.24857 7.33877 7.47667 7.62209 7.83883 7.93361 8.52762 8.73231 8.99221 9.40641 10.91550 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016260 B = 0.002065 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.578573 B =13559.238647 C =15167.225052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 C -0.148 4.148 4 C 0.057 3.943 5 O -0.279 6.279 6 C 0.193 3.807 7 C -0.229 4.229 8 C -0.044 4.044 9 C -0.174 4.174 10 C -0.019 4.019 11 C -0.160 4.160 12 C 0.507 3.493 13 O -0.491 6.491 14 O -0.329 6.329 15 C 0.052 3.948 16 C 0.500 3.500 17 O -0.535 6.535 18 N -0.707 5.707 19 C 0.251 3.749 20 C -0.544 4.544 21 H 0.065 0.935 22 C 0.063 3.937 23 N -0.885 5.885 24 Si 0.905 3.095 25 H -0.272 1.272 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.135 0.865 38 H 0.131 0.869 39 H 0.134 0.866 40 H 0.151 0.849 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.393 0.607 44 H 0.029 0.971 45 H 0.029 0.971 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.366 -0.664 7.122 31.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.206 4.206 4 C -0.018 4.018 5 O -0.190 6.190 6 C 0.145 3.855 7 C -0.247 4.247 8 C -0.062 4.062 9 C -0.192 4.192 10 C -0.037 4.037 11 C -0.162 4.162 12 C 0.351 3.649 13 O -0.380 6.380 14 O -0.244 6.244 15 C -0.026 4.026 16 C 0.283 3.717 17 O -0.413 6.413 18 N -0.357 5.357 19 C 0.131 3.869 20 C -0.582 4.582 21 H 0.083 0.917 22 C -0.141 4.141 23 N -0.522 5.522 24 Si 0.732 3.268 25 H -0.196 1.196 26 H -0.208 1.208 27 H -0.208 1.208 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.102 0.898 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.153 0.847 38 H 0.148 0.852 39 H 0.152 0.848 40 H 0.169 0.831 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.226 0.774 44 H 0.047 0.953 45 H 0.047 0.953 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -29.919 -0.858 7.409 30.835 hybrid contribution 0.252 0.549 -1.091 1.247 sum -29.667 -0.309 6.318 30.334 Atomic orbital electron populations 1.21789 0.93857 1.02086 1.02532 1.21103 0.95513 0.97264 0.97339 1.21824 1.02650 0.94595 1.01485 1.23049 0.78728 1.00442 0.99618 1.86329 1.21321 1.71505 1.39861 1.18970 0.90400 0.89444 0.86729 1.21183 1.00337 1.07138 0.96066 1.21210 0.94825 0.93695 0.96480 1.21098 0.93771 1.04218 1.00091 1.21544 1.01431 0.90437 0.90281 1.18458 0.89553 1.10761 0.97456 1.20870 0.81051 0.77105 0.85884 1.90869 1.72478 1.39689 1.34950 1.86588 1.19188 1.73394 1.45240 1.22826 0.90808 1.00628 0.88344 1.19896 0.86578 0.80666 0.84512 1.90696 1.79764 1.41801 1.28993 1.46359 1.09483 1.57891 1.21987 1.19174 0.72669 0.97469 0.97621 1.21254 0.92037 1.39306 1.05639 0.91704 1.24961 0.97481 0.95007 0.96608 1.69986 1.08532 1.42093 1.31588 0.86335 0.79760 0.78736 0.81926 1.19602 1.20784 1.20781 0.92410 0.91617 0.92423 0.89813 0.92494 0.92956 0.91215 0.91871 0.91822 0.84712 0.85158 0.84822 0.83141 0.88560 0.88552 0.77419 0.95257 0.95253 0.92446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.19 37.16 0.34 -0.40 16 2 C -0.09 -0.70 3.16 -90.62 -0.29 -0.99 16 3 C -0.15 -1.22 9.09 37.16 0.34 -0.88 16 4 C 0.06 0.45 4.12 37.16 0.15 0.60 16 5 O -0.28 -3.34 7.75 -40.50 -0.31 -3.65 16 6 C 0.19 2.24 6.70 -38.67 -0.26 1.98 16 7 C -0.23 -1.95 9.03 -39.48 -0.36 -2.30 16 8 C -0.04 -0.33 10.03 -39.53 -0.40 -0.73 16 9 C -0.17 -1.51 10.02 -39.64 -0.40 -1.91 16 10 C -0.02 -0.21 9.61 -39.19 -0.38 -0.59 16 11 C -0.16 -2.13 5.88 -104.86 -0.62 -2.74 16 12 C 0.51 7.98 7.89 34.46 0.27 8.25 16 13 O -0.49 -8.41 14.95 -26.60 -0.40 -8.81 16 14 O -0.33 -5.55 9.01 -47.32 -0.43 -5.98 16 15 C 0.05 0.83 5.95 36.01 0.21 1.04 16 16 C 0.50 10.24 7.91 -10.99 -0.09 10.15 16 17 O -0.54 -13.17 16.50 -14.10 -0.23 -13.40 16 18 N -0.71 -14.86 5.55 -61.47 -0.34 -15.20 16 19 C 0.25 6.61 5.43 -5.19 -0.03 6.59 16 20 C -0.54 -14.68 9.28 -34.44 -0.32 -15.00 16 21 H 0.06 1.64 7.60 -52.49 -0.40 1.24 16 22 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 23 N -0.88 -25.95 13.29 55.43 0.74 -25.21 16 24 Si 0.91 20.81 29.54 -169.99 -5.02 15.79 16 25 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.75 7.82 -51.93 -0.41 0.35 16 35 H 0.06 0.40 7.66 -51.93 -0.40 0.01 16 36 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 37 H 0.14 0.81 6.30 -52.48 -0.33 0.48 16 38 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 39 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 40 H 0.15 1.76 7.61 -52.48 -0.40 1.36 16 41 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.39 6.97 8.32 -40.82 -0.34 6.63 16 44 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.27 7.28 8.31 -40.82 -0.34 6.95 16 LS Contribution 395.46 15.07 5.96 5.96 Total: -1.00 -34.51 395.46 -8.82 -43.33 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -6.88 Total: 2.44 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: -1.90 Total: 4.72 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: 0.40 Total: -40.41 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: -1.37 Total: -31.84 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.51 -8.82 -43.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731377800.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.639 kcal (2) G-P(sol) polarization free energy of solvation -34.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds