Wall clock time and date at job start Tue Mar 31 2020 19:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47304 * 2 1 4 4 C 1.53000 * 109.47529 * 120.00317 * 2 1 3 5 5 O 1.42901 * 109.47062 * 174.99509 * 4 2 1 6 6 C 1.35641 * 116.99857 * 179.97438 * 5 4 2 7 7 C 1.38712 * 120.15383 * 359.97438 * 6 5 4 8 8 C 1.38049 * 120.08819 * 179.97438 * 7 6 5 9 9 C 1.38565 * 120.40407 * 0.02562 * 8 7 6 10 10 C 1.37759 * 120.30656 * 0.02562 * 9 8 7 11 11 C 1.39766 * 119.90515 * 359.97438 * 10 9 8 12 12 C 1.47400 * 120.20000 * 180.02562 * 11 10 9 13 13 O 1.21509 * 120.00544 * 179.97438 * 12 11 10 14 14 O 1.34754 * 119.99543 * 359.97438 * 12 11 10 15 15 C 1.45203 * 116.99607 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.47044 * 180.02562 * 15 14 12 17 17 O 1.21281 * 119.99901 * 359.97438 * 16 15 14 18 18 N 1.34772 * 120.00101 * 179.97438 * 16 15 14 19 19 C 1.46502 * 119.99921 * 179.97438 * 18 16 15 20 20 C 1.50700 * 109.46885 * 180.02562 * 19 18 16 21 21 H 1.07996 * 120.00411 * 359.97438 * 20 19 18 22 22 C 1.37880 * 119.99874 * 180.02562 * 20 19 18 23 23 N 1.31518 * 120.00094 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99972 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47290 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47231 * 119.99939 * 24 22 20 27 27 H 1.48495 * 109.47237 * 239.99726 * 24 22 20 28 28 H 1.09004 * 109.46500 * 299.99604 * 1 2 3 29 29 H 1.09001 * 109.47414 * 59.99557 * 1 2 3 30 30 H 1.09001 * 109.47130 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46988 * 240.00339 * 2 1 3 32 32 H 1.09001 * 109.47246 * 300.00546 * 3 2 1 33 33 H 1.08999 * 109.47378 * 60.00425 * 3 2 1 34 34 H 1.08996 * 109.47352 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.46665 * 54.99834 * 4 2 1 36 36 H 1.08997 * 109.46847 * 294.99670 * 4 2 1 37 37 H 1.08006 * 119.95568 * 0.02708 * 7 6 5 38 38 H 1.08001 * 119.79771 * 180.27728 * 8 7 6 39 39 H 1.08001 * 119.84038 * 179.97438 * 9 8 7 40 40 H 1.08006 * 120.04375 * 180.02562 * 10 9 8 41 41 H 1.08999 * 109.46711 * 299.99783 * 15 14 12 42 42 H 1.08993 * 109.47522 * 59.99825 * 15 14 12 43 43 H 0.97001 * 120.00024 * 359.97438 * 18 16 15 44 44 H 1.08999 * 109.47174 * 299.99488 * 19 18 16 45 45 H 1.08993 * 109.47299 * 59.99677 * 19 18 16 46 46 H 0.97001 * 119.99909 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 8 3.4642 -0.8239 1.1918 6 6 4.0795 -1.4413 2.2311 7 6 3.3313 -1.9395 3.2875 8 6 3.9588 -2.5680 4.3443 9 6 5.3375 -2.7061 4.3595 10 6 6.0967 -2.2166 3.3195 11 6 5.4747 -1.5779 2.2431 12 6 6.2807 -1.0522 1.1265 13 8 5.7362 -0.4980 0.1923 14 8 7.6215 -1.1862 1.1420 15 6 8.3511 -0.6441 0.0096 16 6 9.8263 -0.8859 0.2003 17 8 10.2236 -1.4583 1.1930 18 7 10.7041 -0.4661 -0.7323 19 6 12.1382 -0.7007 -0.5466 20 6 12.8955 -0.1382 -1.7218 21 1 12.3619 0.3452 -2.5267 22 6 14.2695 -0.2417 -1.7700 23 7 14.9194 -0.8309 -0.7900 24 14 15.2082 0.4549 -3.2271 25 1 14.2521 1.0628 -4.1870 26 1 16.1596 1.4919 -2.7531 27 1 15.9592 -0.6357 -3.8993 28 1 -0.3632 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.6766 1.9563 -0.8899 33 1 1.6768 1.9563 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6054 -1.7198 1.2950 36 1 1.7518 -0.1584 2.1369 37 1 2.2561 -1.8362 3.2828 38 1 3.3713 -2.9582 5.1622 39 1 5.8190 -3.1991 5.1911 40 1 7.1710 -2.3269 3.3356 41 1 8.0183 -1.1342 -0.9053 42 1 8.1647 0.4273 -0.0636 43 1 10.3863 -0.0086 -1.5264 44 1 12.4712 -0.2102 0.3681 45 1 12.3246 -1.7720 -0.4728 46 1 15.8861 -0.9034 -0.8238 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731377800.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:12 Heat of formation + Delta-G solvation = -167.690381 kcal Electronic energy + Delta-G solvation = -27845.063123 eV Core-core repulsion = 23699.045037 eV Total energy + Delta-G solvation = -4146.018086 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.94013 -41.01226 -40.21391 -38.69160 -37.43522 -36.20677 -36.14771 -34.43035 -32.71542 -31.03668 -30.72504 -28.56325 -28.06478 -27.55458 -25.45547 -24.49007 -23.28334 -22.16470 -21.66376 -21.05972 -19.64370 -19.06506 -18.74299 -17.98790 -17.83137 -17.29640 -17.17803 -16.99303 -16.67687 -16.16809 -16.11521 -15.72205 -15.40811 -15.29117 -14.92078 -14.64179 -14.52848 -14.09470 -14.08319 -13.77460 -13.71333 -13.56251 -13.31906 -13.00766 -12.92508 -12.81164 -12.76250 -12.33726 -12.23972 -12.23486 -12.03812 -11.90221 -11.72172 -11.58055 -11.48316 -11.44274 -10.92775 -10.84056 -10.17787 -9.94907 -9.33529 -8.30630 -6.47151 -0.34765 0.35239 1.22166 1.43972 1.44265 1.46080 1.53594 1.58240 2.09104 2.33123 2.55893 2.71810 3.04508 3.57047 3.66019 3.74734 3.81577 3.84996 3.97570 4.02730 4.04646 4.10337 4.18057 4.34504 4.40392 4.47468 4.54526 4.64339 4.77917 4.83126 4.96867 5.00732 5.04027 5.08684 5.17929 5.20687 5.20779 5.30575 5.36247 5.40348 5.40611 5.43476 5.61780 5.71068 5.80884 6.34233 6.60084 6.62979 6.76975 7.18689 7.33395 8.81721 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016260 B = 0.002065 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.578573 B =13559.238647 C =15167.225052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.094 4.094 3 C -0.146 4.146 4 C 0.050 3.950 5 O -0.307 6.307 6 C 0.181 3.819 7 C -0.222 4.222 8 C -0.028 4.028 9 C -0.171 4.171 10 C -0.034 4.034 11 C -0.195 4.195 12 C 0.505 3.495 13 O -0.513 6.513 14 O -0.346 6.346 15 C 0.062 3.938 16 C 0.502 3.498 17 O -0.581 6.581 18 N -0.698 5.698 19 C 0.266 3.734 20 C -0.557 4.557 21 H 0.086 0.914 22 C 0.004 3.996 23 N -0.929 5.929 24 Si 0.986 3.014 25 H -0.254 1.254 26 H -0.279 1.279 27 H -0.279 1.279 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.036 0.964 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.166 0.834 38 H 0.173 0.827 39 H 0.158 0.842 40 H 0.135 0.865 41 H 0.121 0.879 42 H 0.121 0.879 43 H 0.412 0.588 44 H -0.007 1.007 45 H -0.007 1.007 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.299 -0.364 7.060 34.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.113 4.113 3 C -0.203 4.203 4 C -0.025 4.025 5 O -0.219 6.219 6 C 0.133 3.867 7 C -0.240 4.240 8 C -0.046 4.046 9 C -0.189 4.189 10 C -0.052 4.052 11 C -0.197 4.197 12 C 0.352 3.648 13 O -0.403 6.403 14 O -0.262 6.262 15 C -0.015 4.015 16 C 0.288 3.712 17 O -0.462 6.462 18 N -0.350 5.350 19 C 0.144 3.856 20 C -0.594 4.594 21 H 0.104 0.896 22 C -0.196 4.196 23 N -0.568 5.568 24 Si 0.809 3.191 25 H -0.177 1.177 26 H -0.204 1.204 27 H -0.204 1.204 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.055 0.945 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.183 0.817 38 H 0.190 0.810 39 H 0.175 0.825 40 H 0.153 0.847 41 H 0.139 0.861 42 H 0.139 0.861 43 H 0.248 0.752 44 H 0.011 0.989 45 H 0.011 0.989 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -32.903 -0.541 7.323 33.712 hybrid contribution 1.063 0.414 -0.965 1.494 sum -31.840 -0.127 6.359 32.469 Atomic orbital electron populations 1.21746 0.91607 1.03001 1.03244 1.21131 0.97247 0.96255 0.96671 1.21792 1.00462 0.95717 1.02357 1.23322 0.76953 1.01819 1.00360 1.86300 1.23452 1.71673 1.40496 1.19194 0.89980 0.89868 0.87672 1.21564 1.01681 1.05864 0.94936 1.21707 0.94417 0.91627 0.96827 1.21421 0.94561 1.03322 0.99600 1.21519 1.01072 0.91509 0.91129 1.18557 0.90407 1.13178 0.97575 1.21406 0.80343 0.76626 0.86469 1.90840 1.72485 1.41027 1.35982 1.86590 1.20272 1.73799 1.45529 1.22700 0.87272 1.02358 0.89158 1.20600 0.88380 0.79033 0.83226 1.90672 1.80960 1.43696 1.30850 1.46042 1.07663 1.58189 1.23097 1.18646 0.75707 0.94777 0.96461 1.21638 0.92601 1.39241 1.05963 0.89646 1.26066 0.98685 0.95102 0.99759 1.70140 1.09067 1.43514 1.34064 0.85089 0.78178 0.77854 0.77955 1.17707 1.20445 1.20436 0.91272 0.91350 0.91405 0.91582 0.91849 0.91869 0.94501 0.90019 0.90110 0.81660 0.80996 0.82466 0.84733 0.86148 0.86145 0.75155 0.98886 0.98880 0.92178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.19 71.98 0.66 -0.44 16 2 C -0.09 -1.32 3.16 -10.80 -0.03 -1.35 16 3 C -0.15 -2.37 9.09 71.98 0.65 -1.71 16 4 C 0.05 0.70 4.12 71.98 0.30 0.99 16 5 O -0.31 -7.29 7.75 -68.62 -0.53 -7.82 16 6 C 0.18 4.08 6.70 22.86 0.15 4.23 16 7 C -0.22 -3.11 9.03 22.34 0.20 -2.91 16 8 C -0.03 -0.32 10.03 22.30 0.22 -0.09 16 9 C -0.17 -2.63 10.02 22.23 0.22 -2.41 16 10 C -0.03 -0.79 9.61 22.53 0.22 -0.57 16 11 C -0.20 -5.31 5.88 -20.02 -0.12 -5.43 16 12 C 0.51 16.57 7.89 70.23 0.55 17.12 16 13 O -0.51 -18.16 14.95 26.81 0.40 -17.76 16 14 O -0.35 -12.18 9.01 -50.26 -0.45 -12.63 16 15 C 0.06 2.01 5.95 71.24 0.42 2.44 16 16 C 0.50 21.22 7.91 87.66 0.69 21.92 16 17 O -0.58 -30.18 16.50 15.77 0.26 -29.92 16 18 N -0.70 -30.02 5.55 -466.80 -2.59 -32.61 16 19 C 0.27 14.68 5.43 85.63 0.46 15.14 16 20 C -0.56 -30.30 9.28 25.60 0.24 -30.06 16 21 H 0.09 4.20 7.60 -2.91 -0.02 4.18 16 22 C 0.00 0.20 5.46 84.65 0.46 0.66 16 23 N -0.93 -56.02 13.29 21.45 0.28 -55.73 16 24 Si 0.99 42.47 29.54 68.60 2.03 44.49 16 25 H -0.25 -10.11 7.11 99.48 0.71 -9.41 16 26 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 27 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 28 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.07 0.41 8.14 -2.39 -0.02 0.40 16 31 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.04 0.83 7.82 -2.39 -0.02 0.81 16 35 H 0.08 0.82 7.66 -2.39 -0.02 0.80 16 36 H 0.08 0.84 7.66 -2.39 -0.02 0.82 16 37 H 0.17 1.24 6.30 -2.91 -0.02 1.22 16 38 H 0.17 0.56 8.06 -2.91 -0.02 0.54 16 39 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 40 H 0.13 3.42 7.61 -2.91 -0.02 3.39 16 41 H 0.12 3.35 8.14 -2.39 -0.02 3.33 16 42 H 0.12 3.35 8.14 -2.39 -0.02 3.33 16 43 H 0.41 14.44 8.32 -92.71 -0.77 13.67 16 44 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 45 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 46 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -79.71 395.46 4.93 -74.78 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: 0.22 Total: 19.67 kcal Atomic # 6 Polarization: 12.22 SS G_CDS: 5.31 Total: 17.53 kcal Atomic # 7 Polarization: -86.04 SS G_CDS: -2.30 Total: -88.35 kcal Atomic # 8 Polarization: -67.80 SS G_CDS: -0.32 Total: -68.12 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.49 kcal Total: -79.71 4.93 -74.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731377800.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.913 kcal (2) G-P(sol) polarization free energy of solvation -79.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds