Wall clock time and date at job start Tue Mar 31 2020 18:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47338 * 2 1 4 4 C 1.53008 * 109.47205 * 239.99676 * 2 1 3 5 5 C 1.53003 * 109.47164 * 120.00133 * 2 1 3 6 6 H 1.09001 * 109.47198 * 300.00018 * 5 2 1 7 7 O 1.42894 * 109.47615 * 179.97438 * 5 2 1 8 8 C 1.50701 * 109.47017 * 59.99361 * 5 2 1 9 9 O 1.20834 * 119.99412 * 114.73065 * 8 5 2 10 10 O 1.34225 * 120.00239 * 295.00303 * 8 5 2 11 11 C 1.45206 * 116.99701 * 179.72318 * 10 8 5 12 12 C 1.50700 * 109.46683 * 180.02562 * 11 10 8 13 13 O 1.21278 * 120.00504 * 359.97438 * 12 11 10 14 14 N 1.34782 * 119.99956 * 180.02562 * 12 11 10 15 15 C 1.39241 * 119.99971 * 175.70466 * 14 12 11 16 16 C 1.39476 * 119.83303 * 215.00863 * 15 14 12 17 17 C 1.36375 * 120.16861 * 179.76171 * 16 15 14 18 18 C 1.40860 * 119.82817 * 0.51725 * 17 16 15 19 19 C 1.41149 * 120.16951 * 179.71635 * 18 17 16 20 20 H 1.07994 * 120.00939 * 214.80859 * 19 18 17 21 21 C 1.39913 * 119.99689 * 34.80435 * 19 18 17 22 22 N 1.30874 * 119.99906 * 355.56029 * 21 19 18 23 23 Si 1.86802 * 120.00255 * 175.56148 * 21 19 18 24 24 H 1.48505 * 109.46676 * 59.99847 * 23 21 19 25 25 H 1.48496 * 109.47152 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46962 * 300.00154 * 23 21 19 27 27 C 1.40874 * 119.67007 * 359.74214 * 18 17 16 28 28 C 1.36369 * 119.83174 * 359.97438 * 27 18 17 29 29 H 1.09007 * 109.47075 * 300.00243 * 1 2 3 30 30 H 1.08998 * 109.46718 * 59.99689 * 1 2 3 31 31 H 1.08995 * 109.47018 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.47171 * 179.97438 * 3 2 1 33 33 H 1.08993 * 109.47079 * 299.99604 * 3 2 1 34 34 H 1.08998 * 109.47185 * 60.00486 * 3 2 1 35 35 H 1.09000 * 109.47058 * 300.00443 * 4 2 1 36 36 H 1.09000 * 109.46563 * 60.00159 * 4 2 1 37 37 H 1.08999 * 109.47246 * 180.02562 * 4 2 1 38 38 H 0.96699 * 113.99900 * 300.00184 * 7 5 2 39 39 H 1.08995 * 109.46958 * 299.99969 * 11 10 8 40 40 H 1.08997 * 109.47340 * 60.00147 * 11 10 8 41 41 H 0.97004 * 119.99468 * 355.70576 * 14 12 11 42 42 H 1.08006 * 119.91459 * 0.03019 * 16 15 14 43 43 H 1.08002 * 120.08477 * 180.25784 * 17 16 15 44 44 H 0.96998 * 120.00292 * 180.02562 * 22 21 19 45 45 H 1.08008 * 120.08262 * 179.97438 * 27 18 17 46 46 H 1.07997 * 119.92228 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 1.6767 -0.2075 2.1393 7 8 3.4689 -0.7219 1.2490 8 6 1.5375 -2.1421 1.2493 9 8 2.3186 -3.0590 1.1531 10 8 0.2220 -2.3887 1.3506 11 6 -0.1905 -3.7809 1.3378 12 6 -1.6904 -3.8614 1.4594 13 8 -2.3470 -2.8457 1.5487 14 7 -2.3021 -5.0624 1.4701 15 6 -3.6775 -5.1413 1.6722 16 6 -4.2138 -6.2144 2.3838 17 6 -5.5594 -6.2960 2.5899 18 6 -6.4092 -5.2987 2.0727 19 6 -7.8036 -5.3792 2.2767 20 1 -8.4823 -5.0335 1.5111 21 6 -8.3066 -5.9069 3.4709 22 7 -7.4879 -6.4055 4.3620 23 14 -10.1465 -5.8998 3.7934 24 1 -10.8372 -6.6817 2.7366 25 1 -10.4190 -6.5114 5.1189 26 1 -10.6458 -4.5014 3.7808 27 6 -5.8606 -4.2208 1.3504 28 6 -4.5125 -4.1498 1.1574 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9562 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6766 -1.7490 -1.2492 36 1 1.6767 -0.2075 -2.1392 37 1 3.1300 -0.7218 -1.2490 38 1 3.8620 -1.1638 0.4840 39 1 0.1232 -4.2441 0.4023 40 1 0.2710 -4.3043 2.1751 41 1 -1.7841 -5.8717 1.3370 42 1 -3.5613 -6.9804 2.7762 43 1 -5.9728 -7.1253 3.1447 44 1 -7.8366 -6.7718 5.1897 45 1 -6.5061 -3.4527 0.9506 46 1 -4.0904 -3.3243 0.6035 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732717706.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:03 Heat of formation + Delta-G solvation = -155.917283 kcal Electronic energy + Delta-G solvation = -28595.362138 eV Core-core repulsion = 24449.854572 eV Total energy + Delta-G solvation = -4145.507566 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.28707 -39.75393 -38.50679 -37.34739 -36.61629 -35.09351 -34.51056 -33.02133 -30.13114 -29.59421 -28.76045 -27.78168 -27.53612 -27.05224 -24.78887 -22.13831 -21.56896 -20.86524 -19.93247 -19.77454 -18.51378 -17.78479 -17.39452 -17.07271 -16.86790 -16.15092 -15.92900 -15.54232 -15.18315 -14.87846 -14.32273 -14.15676 -13.95441 -13.77383 -13.31959 -13.27672 -12.82314 -12.78382 -12.67579 -12.49971 -12.35373 -12.21076 -12.15890 -11.92954 -11.76501 -11.42405 -11.33502 -11.19777 -11.16950 -11.06787 -10.94089 -10.78975 -10.76560 -10.27112 -10.08824 -9.54995 -9.51774 -9.20170 -8.95447 -7.60402 -6.93809 -6.66141 -4.39115 1.81214 2.08628 2.43894 2.94426 3.04476 3.07165 3.09564 3.24970 3.56503 3.76363 3.94840 4.09798 4.33761 4.42540 4.60756 4.64828 4.78773 4.90459 4.95041 4.98247 5.01892 5.25006 5.36206 5.43013 5.58473 5.60042 5.64628 5.74017 5.83587 5.92740 6.03615 6.13815 6.28076 6.37775 6.65650 6.83470 6.94431 7.01134 7.13364 7.23629 7.39838 7.58214 7.65848 7.79213 8.00772 8.15523 8.26086 8.53382 8.62528 8.88050 8.93919 10.24806 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.026376 B = 0.002081 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.321617 B =13448.653729 C =13986.520788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.094 4.094 3 C -0.135 4.135 4 C -0.153 4.153 5 C 0.129 3.871 6 H 0.140 0.860 7 O -0.529 6.529 8 C 0.436 3.564 9 O -0.504 6.504 10 O -0.319 6.319 11 C 0.046 3.954 12 C 0.499 3.501 13 O -0.507 6.507 14 N -0.645 5.645 15 C 0.000 4.000 16 C -0.118 4.118 17 C -0.142 4.142 18 C 0.101 3.899 19 C -0.460 4.460 20 H 0.076 0.924 21 C 0.069 3.931 22 N -0.810 5.810 23 Si 0.917 3.083 24 H -0.266 1.266 25 H -0.279 1.279 26 H -0.266 1.266 27 C -0.206 4.206 28 C -0.083 4.083 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.383 0.617 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.397 0.603 42 H 0.092 0.908 43 H 0.133 0.867 44 H 0.279 0.721 45 H 0.097 0.903 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.625 7.751 -7.374 20.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.095 4.095 3 C -0.192 4.192 4 C -0.210 4.210 5 C 0.068 3.932 6 H 0.157 0.843 7 O -0.335 6.335 8 C 0.278 3.722 9 O -0.392 6.392 10 O -0.234 6.234 11 C -0.032 4.032 12 C 0.283 3.717 13 O -0.382 6.382 14 N -0.290 5.290 15 C -0.092 4.092 16 C -0.138 4.138 17 C -0.162 4.162 18 C 0.099 3.901 19 C -0.490 4.490 20 H 0.094 0.906 21 C -0.146 4.146 22 N -0.437 5.437 23 Si 0.741 3.259 24 H -0.190 1.190 25 H -0.204 1.204 26 H -0.191 1.191 27 C -0.226 4.226 28 C -0.103 4.103 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.233 0.767 39 H 0.115 0.885 40 H 0.118 0.882 41 H 0.231 0.769 42 H 0.110 0.890 43 H 0.150 0.850 44 H 0.090 0.910 45 H 0.115 0.885 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 17.293 8.409 -6.535 20.309 hybrid contribution -0.366 -1.007 -0.173 1.085 sum 16.927 7.402 -6.708 19.655 Atomic orbital electron populations 1.22058 0.91844 1.04526 1.02607 1.21198 0.98018 0.96749 0.93529 1.21785 1.01534 0.93473 1.02423 1.21989 1.01044 1.00398 0.97585 1.21718 0.82038 0.87649 1.01758 0.84295 1.86647 1.16252 1.79786 1.50813 1.24917 0.80884 0.93978 0.72433 1.90683 1.56752 1.46521 1.45280 1.86675 1.25397 1.28614 1.82720 1.22781 0.94336 0.81365 1.04675 1.19900 0.88123 0.84691 0.78943 1.90737 1.65641 1.34372 1.47438 1.42789 1.08029 1.07425 1.70733 1.17213 0.79988 1.02014 1.09991 1.20311 0.96199 0.97542 0.99739 1.21198 0.91277 1.00423 1.03323 1.17737 0.93745 0.89182 0.89447 1.19482 0.92140 1.35959 1.01457 0.90567 1.25899 1.00275 0.92664 0.95769 1.69746 1.36388 1.30107 1.07504 0.86231 0.82042 0.79488 0.78092 1.19026 1.20412 1.19052 1.20810 0.93576 0.99497 1.08723 1.20388 0.93230 0.97566 0.99121 0.91703 0.92006 0.90123 0.91839 0.91985 0.92068 0.92666 0.91095 0.92195 0.76729 0.88471 0.88249 0.76890 0.88988 0.84954 0.91012 0.88500 0.87438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 7.95 37.16 0.30 -1.16 16 2 C -0.09 -0.74 0.63 -154.50 -0.10 -0.83 16 3 C -0.13 -0.88 8.33 37.16 0.31 -0.57 16 4 C -0.15 -1.09 7.92 37.16 0.29 -0.80 16 5 C 0.13 1.18 2.85 -27.88 -0.08 1.10 16 6 H 0.14 1.17 8.14 -51.93 -0.42 0.74 16 7 O -0.53 -4.77 12.28 -55.14 -0.68 -5.45 16 8 C 0.44 5.05 5.87 36.01 0.21 5.26 16 9 O -0.50 -6.71 16.07 -25.47 -0.41 -7.12 16 10 O -0.32 -4.13 6.98 -45.89 -0.32 -4.45 16 11 C 0.05 0.57 5.95 36.01 0.21 0.78 16 12 C 0.50 8.25 7.74 -10.98 -0.09 8.17 16 13 O -0.51 -10.51 13.92 -14.10 -0.20 -10.70 16 14 N -0.65 -10.67 5.30 -9.74 -0.05 -10.73 16 15 C 0.00 -0.01 6.31 -83.57 -0.53 -0.53 16 16 C -0.12 -2.61 9.90 -39.79 -0.39 -3.00 16 17 C -0.14 -3.58 8.62 -39.26 -0.34 -3.92 16 18 C 0.10 2.67 5.55 -106.80 -0.59 2.08 16 19 C -0.46 -12.08 9.03 -37.85 -0.34 -12.42 16 20 H 0.08 1.92 7.85 -52.49 -0.41 1.50 16 21 C 0.07 1.73 5.42 -17.33 -0.09 1.64 16 22 N -0.81 -20.81 10.60 55.55 0.59 -20.22 16 23 Si 0.92 18.77 29.56 -169.99 -5.03 13.74 16 24 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 25 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 26 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 27 C -0.21 -5.12 9.74 -39.26 -0.38 -5.50 16 28 C -0.08 -1.94 8.61 -39.79 -0.34 -2.28 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.95 5.53 -51.93 -0.29 0.66 16 32 H 0.06 0.40 7.68 -51.92 -0.40 0.00 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.05 0.47 7.22 -51.93 -0.37 0.09 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.34 6.78 -51.93 -0.35 -0.01 16 38 H 0.38 2.63 7.07 45.56 0.32 2.96 16 39 H 0.10 0.98 8.13 -51.93 -0.42 0.56 16 40 H 0.10 1.08 8.13 -51.93 -0.42 0.66 16 41 H 0.40 4.96 8.82 -40.82 -0.36 4.60 16 42 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 43 H 0.13 3.45 6.13 -52.49 -0.32 3.12 16 44 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 45 H 0.10 2.28 8.06 -52.48 -0.42 1.86 16 46 H 0.11 2.46 6.22 -52.49 -0.33 2.13 16 LS Contribution 379.26 15.07 5.72 5.72 Total: -1.00 -31.41 379.26 -8.20 -39.61 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -5.87 Total: 11.60 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: -1.95 Total: -11.99 kcal Atomic # 7 Polarization: -31.48 SS G_CDS: 0.54 Total: -30.95 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -1.60 Total: -27.72 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.41 -8.20 -39.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732717706.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.312 kcal (2) G-P(sol) polarization free energy of solvation -31.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds