Wall clock time and date at job start Tue Mar 31 2020 18:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47338 * 2 1 4 4 C 1.53008 * 109.47205 * 239.99676 * 2 1 3 5 5 C 1.53003 * 109.47164 * 120.00133 * 2 1 3 6 6 H 1.09001 * 109.47198 * 300.00018 * 5 2 1 7 7 O 1.42894 * 109.47615 * 179.97438 * 5 2 1 8 8 C 1.50701 * 109.47017 * 59.99361 * 5 2 1 9 9 O 1.20834 * 119.99412 * 114.73065 * 8 5 2 10 10 O 1.34225 * 120.00239 * 295.00303 * 8 5 2 11 11 C 1.45206 * 116.99701 * 179.72318 * 10 8 5 12 12 C 1.50700 * 109.46683 * 180.02562 * 11 10 8 13 13 O 1.21278 * 120.00504 * 359.97438 * 12 11 10 14 14 N 1.34782 * 119.99956 * 180.02562 * 12 11 10 15 15 C 1.39241 * 119.99971 * 175.70466 * 14 12 11 16 16 C 1.39476 * 119.83303 * 215.00863 * 15 14 12 17 17 C 1.36375 * 120.16861 * 179.76171 * 16 15 14 18 18 C 1.40860 * 119.82817 * 0.51725 * 17 16 15 19 19 C 1.41149 * 120.16951 * 179.71635 * 18 17 16 20 20 H 1.07994 * 120.00939 * 214.80859 * 19 18 17 21 21 C 1.39913 * 119.99689 * 34.80435 * 19 18 17 22 22 N 1.30874 * 119.99906 * 355.56029 * 21 19 18 23 23 Si 1.86802 * 120.00255 * 175.56148 * 21 19 18 24 24 H 1.48505 * 109.46676 * 59.99847 * 23 21 19 25 25 H 1.48496 * 109.47152 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46962 * 300.00154 * 23 21 19 27 27 C 1.40874 * 119.67007 * 359.74214 * 18 17 16 28 28 C 1.36369 * 119.83174 * 359.97438 * 27 18 17 29 29 H 1.09007 * 109.47075 * 300.00243 * 1 2 3 30 30 H 1.08998 * 109.46718 * 59.99689 * 1 2 3 31 31 H 1.08995 * 109.47018 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.47171 * 179.97438 * 3 2 1 33 33 H 1.08993 * 109.47079 * 299.99604 * 3 2 1 34 34 H 1.08998 * 109.47185 * 60.00486 * 3 2 1 35 35 H 1.09000 * 109.47058 * 300.00443 * 4 2 1 36 36 H 1.09000 * 109.46563 * 60.00159 * 4 2 1 37 37 H 1.08999 * 109.47246 * 180.02562 * 4 2 1 38 38 H 0.96699 * 113.99900 * 300.00184 * 7 5 2 39 39 H 1.08995 * 109.46958 * 299.99969 * 11 10 8 40 40 H 1.08997 * 109.47340 * 60.00147 * 11 10 8 41 41 H 0.97004 * 119.99468 * 355.70576 * 14 12 11 42 42 H 1.08006 * 119.91459 * 0.03019 * 16 15 14 43 43 H 1.08002 * 120.08477 * 180.25784 * 17 16 15 44 44 H 0.96998 * 120.00292 * 180.02562 * 22 21 19 45 45 H 1.08008 * 120.08262 * 179.97438 * 27 18 17 46 46 H 1.07997 * 119.92228 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 1.6767 -0.2075 2.1393 7 8 3.4689 -0.7219 1.2490 8 6 1.5375 -2.1421 1.2493 9 8 2.3186 -3.0590 1.1531 10 8 0.2220 -2.3887 1.3506 11 6 -0.1905 -3.7809 1.3378 12 6 -1.6904 -3.8614 1.4594 13 8 -2.3470 -2.8457 1.5487 14 7 -2.3021 -5.0624 1.4701 15 6 -3.6775 -5.1413 1.6722 16 6 -4.2138 -6.2144 2.3838 17 6 -5.5594 -6.2960 2.5899 18 6 -6.4092 -5.2987 2.0727 19 6 -7.8036 -5.3792 2.2767 20 1 -8.4823 -5.0335 1.5111 21 6 -8.3066 -5.9069 3.4709 22 7 -7.4879 -6.4055 4.3620 23 14 -10.1465 -5.8998 3.7934 24 1 -10.8372 -6.6817 2.7366 25 1 -10.4190 -6.5114 5.1189 26 1 -10.6458 -4.5014 3.7808 27 6 -5.8606 -4.2208 1.3504 28 6 -4.5125 -4.1498 1.1574 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9562 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6766 -1.7490 -1.2492 36 1 1.6767 -0.2075 -2.1392 37 1 3.1300 -0.7218 -1.2490 38 1 3.8620 -1.1638 0.4840 39 1 0.1232 -4.2441 0.4023 40 1 0.2710 -4.3043 2.1751 41 1 -1.7841 -5.8717 1.3370 42 1 -3.5613 -6.9804 2.7762 43 1 -5.9728 -7.1253 3.1447 44 1 -7.8366 -6.7718 5.1897 45 1 -6.5061 -3.4527 0.9506 46 1 -4.0904 -3.3243 0.6035 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732717706.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:02 Heat of formation + Delta-G solvation = -174.555642 kcal Electronic energy + Delta-G solvation = -28596.170358 eV Core-core repulsion = 24449.854572 eV Total energy + Delta-G solvation = -4146.315786 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.20578 -41.18051 -39.43956 -38.91672 -37.63656 -36.18901 -35.78104 -34.77238 -31.62376 -31.35247 -30.11576 -28.53880 -28.28690 -27.82343 -26.51743 -23.58680 -22.91784 -22.43972 -21.38876 -20.53754 -19.43767 -19.24314 -18.91823 -18.07539 -17.97741 -17.64999 -17.01328 -16.75802 -16.45799 -15.93318 -15.69584 -15.47623 -15.08511 -14.76848 -14.53885 -14.45279 -14.20491 -14.05207 -13.91117 -13.61291 -13.54300 -13.25337 -13.16717 -13.00466 -12.89379 -12.85523 -12.77269 -12.54971 -12.48785 -12.11276 -11.88294 -11.81050 -11.69754 -11.58873 -11.40871 -11.23930 -11.04406 -10.85124 -10.64004 -9.48119 -8.76750 -8.51567 -6.34431 0.74047 0.92261 1.12207 1.13593 1.39705 1.42845 1.51208 1.67811 2.23476 2.35048 2.79252 3.08381 3.41727 3.52506 3.60298 3.68723 3.73447 3.97226 3.98917 4.02840 4.33716 4.36543 4.38662 4.51448 4.70999 4.77097 4.86964 4.91692 4.98409 5.00151 5.06619 5.10598 5.12812 5.16254 5.26533 5.31047 5.38387 5.40582 5.51416 5.68373 5.87556 5.99073 6.11557 6.29820 6.37501 6.53144 6.62354 6.67194 6.95666 6.97639 7.25527 8.40875 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.026376 B = 0.002081 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.321617 B =13448.653729 C =13986.520788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.086 4.086 3 C -0.132 4.132 4 C -0.153 4.153 5 C 0.132 3.868 6 H 0.146 0.854 7 O -0.533 6.533 8 C 0.439 3.561 9 O -0.522 6.522 10 O -0.333 6.333 11 C 0.053 3.947 12 C 0.501 3.499 13 O -0.551 6.551 14 N -0.637 5.637 15 C 0.019 3.981 16 C -0.115 4.115 17 C -0.161 4.161 18 C 0.068 3.932 19 C -0.497 4.497 20 H 0.073 0.927 21 C 0.027 3.973 22 N -0.840 5.840 23 Si 0.988 3.012 24 H -0.258 1.258 25 H -0.269 1.269 26 H -0.265 1.265 27 C -0.221 4.221 28 C -0.094 4.094 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.040 0.960 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.392 0.608 39 H 0.126 0.874 40 H 0.121 0.879 41 H 0.421 0.579 42 H 0.127 0.873 43 H 0.119 0.881 44 H 0.285 0.715 45 H 0.096 0.904 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.473 7.913 -7.618 22.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.087 4.087 3 C -0.189 4.189 4 C -0.210 4.210 5 C 0.071 3.929 6 H 0.163 0.837 7 O -0.341 6.341 8 C 0.282 3.718 9 O -0.411 6.411 10 O -0.248 6.248 11 C -0.024 4.024 12 C 0.288 3.712 13 O -0.428 6.428 14 N -0.284 5.284 15 C -0.075 4.075 16 C -0.135 4.135 17 C -0.181 4.181 18 C 0.066 3.934 19 C -0.527 4.527 20 H 0.091 0.909 21 C -0.185 4.185 22 N -0.468 5.468 23 Si 0.809 3.191 24 H -0.182 1.182 25 H -0.193 1.193 26 H -0.190 1.190 27 C -0.241 4.241 28 C -0.114 4.114 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.059 0.941 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.243 0.757 39 H 0.144 0.856 40 H 0.139 0.861 41 H 0.259 0.741 42 H 0.144 0.856 43 H 0.137 0.863 44 H 0.096 0.904 45 H 0.115 0.885 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 19.197 8.546 -6.801 22.086 hybrid contribution -0.747 -1.013 -0.156 1.268 sum 18.449 7.533 -6.958 21.108 Atomic orbital electron populations 1.22022 0.93238 1.02966 1.02674 1.21139 0.96680 0.97605 0.93269 1.21769 1.01876 0.92350 1.02889 1.22002 1.02097 0.99430 0.97465 1.21830 0.82147 0.86218 1.02694 0.83687 1.86639 1.16012 1.79824 1.51585 1.25409 0.80076 0.94758 0.71527 1.90671 1.56901 1.47241 1.46275 1.86693 1.26355 1.28838 1.82936 1.22736 0.90715 0.81859 1.07045 1.20599 0.89901 0.83636 0.77022 1.90727 1.67116 1.35886 1.49117 1.42664 1.06249 1.08940 1.70501 1.17248 0.82200 1.00454 1.07565 1.20565 0.95569 0.98428 0.98987 1.21187 0.92664 1.00137 1.04117 1.18052 0.94491 0.90156 0.90706 1.19711 0.92482 1.37992 1.02555 0.90851 1.26745 1.04957 0.91792 0.94981 1.69813 1.38304 1.30677 1.07979 0.85159 0.76112 0.79445 0.78395 1.18218 1.19286 1.18995 1.20937 0.94531 0.99510 1.09150 1.20513 0.92955 0.98327 0.99605 0.92282 0.91339 0.92388 0.91208 0.91170 0.92034 0.94123 0.90337 0.90565 0.75658 0.85629 0.86111 0.74104 0.85554 0.86288 0.90437 0.88533 0.87234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 7.95 71.98 0.57 -2.19 16 2 C -0.09 -1.20 0.63 -52.18 -0.03 -1.24 16 3 C -0.13 -1.43 8.33 71.98 0.60 -0.83 16 4 C -0.15 -1.88 7.92 71.98 0.57 -1.31 16 5 C 0.13 2.18 2.85 29.85 0.09 2.27 16 6 H 0.15 2.21 8.14 -2.39 -0.02 2.19 16 7 O -0.53 -8.46 12.28 -129.94 -1.60 -10.06 16 8 C 0.44 9.43 5.87 71.24 0.42 9.84 16 9 O -0.52 -12.78 16.07 28.36 0.46 -12.32 16 10 O -0.33 -8.14 6.98 -45.02 -0.31 -8.45 16 11 C 0.05 1.18 5.95 71.24 0.42 1.61 16 12 C 0.50 15.78 7.74 87.66 0.68 16.46 16 13 O -0.55 -22.66 13.92 15.77 0.22 -22.44 16 14 N -0.64 -19.70 5.30 -303.11 -1.61 -21.31 16 15 C 0.02 0.78 6.31 38.56 0.24 1.02 16 16 C -0.12 -5.02 9.90 22.13 0.22 -4.81 16 17 C -0.16 -8.28 8.62 22.48 0.19 -8.09 16 18 C 0.07 3.73 5.55 -21.28 -0.12 3.61 16 19 C -0.50 -27.10 9.03 23.39 0.21 -26.89 16 20 H 0.07 3.86 7.85 -2.91 -0.02 3.84 16 21 C 0.03 1.39 5.42 85.24 0.46 1.86 16 22 N -0.84 -44.06 10.60 21.82 0.23 -43.83 16 23 Si 0.99 38.89 29.56 68.60 2.03 40.92 16 24 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 25 H -0.27 -9.99 7.11 99.48 0.71 -9.29 16 26 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 27 C -0.22 -11.38 9.74 22.48 0.22 -11.16 16 28 C -0.09 -4.43 8.61 22.13 0.19 -4.24 16 29 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.06 1.34 5.53 -2.39 -0.01 1.33 16 32 H 0.07 0.69 7.68 -2.38 -0.02 0.67 16 33 H 0.07 0.66 8.14 -2.39 -0.02 0.65 16 34 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.04 0.62 7.22 -2.39 -0.02 0.60 16 36 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.08 0.68 6.78 -2.39 -0.02 0.66 16 38 H 0.39 4.48 7.07 -74.06 -0.52 3.96 16 39 H 0.13 2.13 8.13 -2.39 -0.02 2.11 16 40 H 0.12 2.24 8.13 -2.39 -0.02 2.22 16 41 H 0.42 9.15 8.82 -92.71 -0.82 8.33 16 42 H 0.13 4.55 8.06 -2.91 -0.02 4.52 16 43 H 0.12 6.39 6.13 -2.91 -0.02 6.37 16 44 H 0.29 13.62 8.30 -92.71 -0.77 12.85 16 45 H 0.10 4.78 8.06 -2.91 -0.02 4.76 16 46 H 0.11 5.08 6.22 -2.91 -0.02 5.06 16 Total: -1.00 -69.74 379.26 4.04 -65.70 By element: Atomic # 1 Polarization: 36.17 SS G_CDS: -0.32 Total: 35.85 kcal Atomic # 6 Polarization: -29.01 SS G_CDS: 4.93 Total: -24.07 kcal Atomic # 7 Polarization: -63.76 SS G_CDS: -1.38 Total: -65.14 kcal Atomic # 8 Polarization: -52.03 SS G_CDS: -1.23 Total: -53.27 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 2.03 Total: 40.92 kcal Total: -69.74 4.04 -65.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732717706.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.851 kcal (2) G-P(sol) polarization free energy of solvation -69.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds