Wall clock time and date at job start Tue Mar 31 2020 18:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46681 * 2 1 4 4 C 1.53001 * 109.47253 * 240.00247 * 2 1 3 5 5 C 1.50700 * 109.46819 * 119.99918 * 2 1 3 6 6 O 1.21275 * 120.00401 * 0.02562 * 5 2 1 7 7 N 1.34776 * 119.99529 * 180.02562 * 5 2 1 8 8 C 1.46503 * 119.99860 * 180.02562 * 7 5 2 9 9 C 1.50699 * 109.47042 * 179.97438 * 8 7 5 10 10 O 1.20821 * 120.00185 * 359.97438 * 9 8 7 11 11 O 1.34231 * 120.00087 * 180.02562 * 9 8 7 12 12 C 1.45196 * 117.00047 * 179.97438 * 11 9 8 13 13 C 1.50706 * 109.47037 * 179.97438 * 12 11 9 14 14 C 1.38294 * 119.93130 * 269.73094 * 13 12 11 15 15 C 1.38099 * 120.07055 * 179.72623 * 14 13 12 16 16 C 1.38885 * 119.92916 * 0.56465 * 15 14 13 17 17 O 1.35746 * 120.07221 * 179.68553 * 16 15 14 18 18 C 1.34828 * 117.00240 * 174.48968 * 17 16 15 19 19 H 1.08006 * 120.00054 * 5.05118 * 18 17 16 20 20 C 1.38655 * 120.00332 * 185.05591 * 18 17 16 21 21 N 1.31553 * 119.99844 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00136 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47289 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47041 * 119.99838 * 22 20 18 25 25 H 1.48501 * 109.47247 * 240.00056 * 22 20 18 26 26 C 1.38888 * 119.85809 * 359.70827 * 16 15 14 27 27 C 1.38097 * 119.93011 * 359.97438 * 26 16 15 28 28 H 1.08999 * 109.47675 * 299.99990 * 1 2 3 29 29 H 1.09005 * 109.47243 * 60.00110 * 1 2 3 30 30 H 1.09001 * 109.46840 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47183 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47442 * 299.99459 * 3 2 1 33 33 H 1.08996 * 109.47318 * 60.00075 * 3 2 1 34 34 H 1.09001 * 109.46979 * 299.99647 * 4 2 1 35 35 H 1.08996 * 109.47213 * 59.99525 * 4 2 1 36 36 H 1.08999 * 109.46751 * 180.02562 * 4 2 1 37 37 H 0.97002 * 120.00108 * 359.97438 * 7 5 2 38 38 H 1.09001 * 109.47224 * 59.99786 * 8 7 5 39 39 H 1.08996 * 109.47112 * 299.99607 * 8 7 5 40 40 H 1.08996 * 109.47566 * 299.99750 * 12 11 9 41 41 H 1.09002 * 109.47418 * 60.00155 * 12 11 9 42 42 H 1.08001 * 119.96614 * 359.97036 * 14 13 12 43 43 H 1.08000 * 120.04137 * 180.26759 * 15 14 13 44 44 H 0.97003 * 120.00423 * 179.97438 * 21 20 18 45 45 H 1.08002 * 120.03290 * 179.97438 * 26 16 15 46 46 H 1.07997 * 119.96090 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2305 6 8 1.2442 -1.1717 2.0286 7 7 3.3573 -0.8331 1.4440 8 6 3.8457 -1.5242 2.6399 9 6 5.3527 -1.5240 2.6400 10 8 5.9568 -1.0008 1.7338 11 8 6.0239 -2.1061 3.6462 12 6 7.4738 -2.0684 3.5802 13 6 8.0499 -2.7651 4.7860 14 6 8.3192 -2.0453 5.9357 15 6 8.8418 -2.6818 7.0442 16 6 9.1078 -4.0442 6.9997 17 8 9.6275 -4.6716 8.0855 18 6 9.7550 -6.0120 8.0153 19 1 9.5263 -6.5288 7.0948 20 6 10.1795 -6.7272 9.1247 21 7 10.4584 -6.0978 10.2457 22 14 10.3553 -8.5844 9.0276 23 1 9.9825 -9.0464 7.6664 24 1 11.7627 -8.9638 9.3114 25 1 9.4601 -9.2194 10.0278 26 6 8.8416 -4.7632 5.8416 27 6 8.3129 -4.1221 4.7387 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6768 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7215 -1.2490 37 1 3.9877 -0.4644 0.8055 38 1 3.4828 -2.5520 2.6393 39 1 3.4820 -1.0110 3.5301 40 1 7.8096 -2.5726 2.6740 41 1 7.8101 -1.0317 3.5649 42 1 8.1169 -0.9849 5.9680 43 1 9.0478 -2.1200 7.9432 44 1 10.7550 -6.5981 11.0220 45 1 9.0478 -5.8227 5.8037 46 1 8.1052 -4.6808 3.8381 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733397395.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:48 Heat of formation + Delta-G solvation = -137.176123 kcal Electronic energy + Delta-G solvation = -27329.606484 eV Core-core repulsion = 23184.911596 eV Total energy + Delta-G solvation = -4144.694888 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.97585 -40.19701 -39.12747 -37.23071 -36.25019 -36.04820 -34.88520 -32.48570 -30.81204 -30.29882 -28.90697 -27.83542 -27.44726 -26.05158 -24.89950 -23.25074 -22.11140 -21.26359 -20.66335 -20.06635 -18.13161 -17.79843 -17.51165 -17.08450 -16.80331 -16.47379 -15.92782 -15.64324 -14.85429 -14.74914 -14.54513 -14.29434 -14.26182 -14.13129 -13.76265 -13.64158 -13.37582 -12.91803 -12.83934 -12.81305 -12.71771 -12.59313 -12.37401 -12.31627 -12.16134 -11.77436 -11.46849 -11.42514 -11.39694 -11.14109 -10.87867 -10.81504 -10.66621 -10.58183 -10.49110 -10.10850 -9.58617 -9.45095 -8.94809 -8.31770 -7.38424 -6.55945 -4.14512 1.77591 1.91245 2.11019 2.25541 2.43997 3.03376 3.08209 3.11176 3.14193 3.88248 4.11841 4.27115 4.34960 4.39073 4.63432 4.75664 4.91590 4.99061 5.03811 5.07869 5.08281 5.11379 5.14887 5.17710 5.24772 5.35266 5.42801 5.46148 5.47869 5.59120 5.63263 5.71199 5.73744 5.82973 5.90489 6.08460 6.28305 6.30971 6.54557 6.75873 6.92514 7.04510 7.10119 7.21656 7.31534 7.49710 7.67059 7.80411 7.88787 8.89314 9.56598 10.61421 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.024781 B = 0.001685 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.613140 B =16608.792796 C =17006.299165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.084 4.084 3 C -0.143 4.143 4 C -0.143 4.143 5 C 0.526 3.474 6 O -0.534 6.534 7 N -0.722 5.722 8 C 0.123 3.877 9 C 0.458 3.542 10 O -0.515 6.515 11 O -0.343 6.343 12 C 0.131 3.869 13 C -0.208 4.208 14 C -0.047 4.047 15 C -0.196 4.196 16 C 0.164 3.836 17 O -0.171 6.171 18 C -0.394 4.394 19 H 0.095 0.905 20 C 0.040 3.960 21 N -0.857 5.857 22 Si 0.943 3.057 23 H -0.266 1.266 24 H -0.275 1.275 25 H -0.275 1.275 26 C -0.238 4.238 27 C -0.043 4.043 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.411 0.589 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.113 0.887 43 H 0.120 0.880 44 H 0.271 0.729 45 H 0.130 0.870 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.207 11.566 -20.610 27.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.087 4.087 3 C -0.200 4.200 4 C -0.201 4.201 5 C 0.313 3.687 6 O -0.410 6.410 7 N -0.379 5.379 8 C -0.002 4.002 9 C 0.300 3.700 10 O -0.404 6.404 11 O -0.259 6.259 12 C 0.059 3.941 13 C -0.209 4.209 14 C -0.066 4.066 15 C -0.215 4.215 16 C 0.109 3.891 17 O -0.073 6.073 18 C -0.470 4.470 19 H 0.112 0.888 20 C -0.165 4.165 21 N -0.491 5.491 22 Si 0.768 3.232 23 H -0.190 1.190 24 H -0.200 1.200 25 H -0.200 1.200 26 C -0.257 4.257 27 C -0.062 4.062 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.250 0.750 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.131 0.869 43 H 0.138 0.862 44 H 0.081 0.919 45 H 0.148 0.852 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -14.353 11.374 -19.785 26.959 hybrid contribution 0.632 -0.802 -0.341 1.077 sum -13.720 10.572 -20.126 26.553 Atomic orbital electron populations 1.21679 0.91617 1.03032 1.02238 1.20813 0.98213 0.96485 0.93208 1.21900 1.01449 0.93562 1.03138 1.21900 1.01447 1.00724 0.95981 1.20630 0.81293 0.79304 0.87499 1.90728 1.55209 1.48178 1.46886 1.45812 1.07944 1.59164 1.24987 1.20672 0.87354 1.01319 0.90848 1.23407 0.91297 0.75103 0.80146 1.90639 1.70319 1.43025 1.36460 1.86658 1.23869 1.70060 1.45299 1.21783 0.74196 1.00642 0.97489 1.18828 1.11661 0.94590 0.95865 1.20503 0.96153 0.98379 0.91547 1.20202 1.09011 0.92668 0.99632 1.19450 0.90039 0.92100 0.87532 1.83975 1.67844 1.22386 1.33091 1.21432 1.47080 0.78795 0.99651 0.88769 1.25339 0.96241 1.00687 0.94202 1.70043 1.40936 1.36483 1.01671 0.85612 0.78419 0.80300 0.78909 1.19003 1.20039 1.20014 1.21149 1.09553 1.01157 0.93877 1.20615 0.95419 0.92982 0.97162 0.91795 0.91836 0.91794 0.91923 0.91090 0.91859 0.91869 0.91081 0.91923 0.75046 0.86930 0.86912 0.90995 0.90956 0.86865 0.86151 0.91860 0.85214 0.87306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.86 7.76 37.16 0.29 -0.57 16 2 C -0.08 -0.56 0.87 -155.66 -0.14 -0.70 16 3 C -0.14 -0.75 8.37 37.16 0.31 -0.44 16 4 C -0.14 -0.76 8.37 37.16 0.31 -0.45 16 5 C 0.53 5.09 6.48 -10.99 -0.07 5.01 16 6 O -0.53 -7.05 15.98 5.56 0.09 -6.96 16 7 N -0.72 -6.37 5.31 -61.47 -0.33 -6.70 16 8 C 0.12 1.17 6.27 -5.19 -0.03 1.13 16 9 C 0.46 5.31 8.03 36.00 0.29 5.60 16 10 O -0.51 -6.68 15.42 -18.75 -0.29 -6.97 16 11 O -0.34 -4.64 10.20 -39.26 -0.40 -5.04 16 12 C 0.13 1.81 5.59 36.01 0.20 2.01 16 13 C -0.21 -3.47 5.52 -104.58 -0.58 -4.05 16 14 C -0.05 -0.82 9.69 -39.61 -0.38 -1.20 16 15 C -0.20 -3.99 9.99 -39.39 -0.39 -4.38 16 16 C 0.16 3.83 6.65 -39.10 -0.26 3.57 16 17 O -0.17 -4.73 9.76 0.06 0.00 -4.73 16 18 C -0.39 -10.69 9.49 30.89 0.29 -10.39 16 19 H 0.09 2.36 5.20 -52.48 -0.27 2.09 16 20 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 21 N -0.86 -24.52 13.67 55.48 0.76 -23.76 16 22 Si 0.94 19.98 29.55 -169.99 -5.02 14.95 16 23 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 24 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 25 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 26 C -0.24 -4.99 9.17 -39.39 -0.36 -5.35 16 27 C -0.04 -0.77 9.69 -39.61 -0.38 -1.15 16 28 H 0.06 0.49 8.10 -51.93 -0.42 0.06 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 31 H 0.06 0.31 7.57 -51.92 -0.39 -0.08 16 32 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 36 H 0.06 0.31 7.56 -51.93 -0.39 -0.08 16 37 H 0.41 3.26 6.28 -40.82 -0.26 3.00 16 38 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 41 H 0.07 0.92 8.07 -51.93 -0.42 0.50 16 42 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 43 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 44 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 45 H 0.13 2.71 5.64 -52.49 -0.30 2.41 16 46 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 LS Contribution 392.72 15.07 5.92 5.92 Total: -1.00 -32.13 392.72 -6.93 -39.06 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -6.65 Total: 4.61 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: -1.00 Total: -10.37 kcal Atomic # 7 Polarization: -30.89 SS G_CDS: 0.43 Total: -30.46 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.60 Total: -23.71 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.13 -6.93 -39.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733397395.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.121 kcal (2) G-P(sol) polarization free energy of solvation -32.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds