Wall clock time and date at job start Tue Mar 31 2020 18:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46681 * 2 1 4 4 C 1.53001 * 109.47253 * 240.00247 * 2 1 3 5 5 C 1.50700 * 109.46819 * 119.99918 * 2 1 3 6 6 O 1.21275 * 120.00401 * 0.02562 * 5 2 1 7 7 N 1.34776 * 119.99529 * 180.02562 * 5 2 1 8 8 C 1.46503 * 119.99860 * 180.02562 * 7 5 2 9 9 C 1.50699 * 109.47042 * 179.97438 * 8 7 5 10 10 O 1.20821 * 120.00185 * 359.97438 * 9 8 7 11 11 O 1.34231 * 120.00087 * 180.02562 * 9 8 7 12 12 C 1.45196 * 117.00047 * 179.97438 * 11 9 8 13 13 C 1.50706 * 109.47037 * 179.97438 * 12 11 9 14 14 C 1.38294 * 119.93130 * 269.73094 * 13 12 11 15 15 C 1.38099 * 120.07055 * 179.72623 * 14 13 12 16 16 C 1.38885 * 119.92916 * 0.56465 * 15 14 13 17 17 O 1.35746 * 120.07221 * 179.68553 * 16 15 14 18 18 C 1.34828 * 117.00240 * 174.48968 * 17 16 15 19 19 H 1.08006 * 120.00054 * 5.05118 * 18 17 16 20 20 C 1.38655 * 120.00332 * 185.05591 * 18 17 16 21 21 N 1.31553 * 119.99844 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00136 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47289 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47041 * 119.99838 * 22 20 18 25 25 H 1.48501 * 109.47247 * 240.00056 * 22 20 18 26 26 C 1.38888 * 119.85809 * 359.70827 * 16 15 14 27 27 C 1.38097 * 119.93011 * 359.97438 * 26 16 15 28 28 H 1.08999 * 109.47675 * 299.99990 * 1 2 3 29 29 H 1.09005 * 109.47243 * 60.00110 * 1 2 3 30 30 H 1.09001 * 109.46840 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47183 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47442 * 299.99459 * 3 2 1 33 33 H 1.08996 * 109.47318 * 60.00075 * 3 2 1 34 34 H 1.09001 * 109.46979 * 299.99647 * 4 2 1 35 35 H 1.08996 * 109.47213 * 59.99525 * 4 2 1 36 36 H 1.08999 * 109.46751 * 180.02562 * 4 2 1 37 37 H 0.97002 * 120.00108 * 359.97438 * 7 5 2 38 38 H 1.09001 * 109.47224 * 59.99786 * 8 7 5 39 39 H 1.08996 * 109.47112 * 299.99607 * 8 7 5 40 40 H 1.08996 * 109.47566 * 299.99750 * 12 11 9 41 41 H 1.09002 * 109.47418 * 60.00155 * 12 11 9 42 42 H 1.08001 * 119.96614 * 359.97036 * 14 13 12 43 43 H 1.08000 * 120.04137 * 180.26759 * 15 14 13 44 44 H 0.97003 * 120.00423 * 179.97438 * 21 20 18 45 45 H 1.08002 * 120.03290 * 179.97438 * 26 16 15 46 46 H 1.07997 * 119.96090 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2305 6 8 1.2442 -1.1717 2.0286 7 7 3.3573 -0.8331 1.4440 8 6 3.8457 -1.5242 2.6399 9 6 5.3527 -1.5240 2.6400 10 8 5.9568 -1.0008 1.7338 11 8 6.0239 -2.1061 3.6462 12 6 7.4738 -2.0684 3.5802 13 6 8.0499 -2.7651 4.7860 14 6 8.3192 -2.0453 5.9357 15 6 8.8418 -2.6818 7.0442 16 6 9.1078 -4.0442 6.9997 17 8 9.6275 -4.6716 8.0855 18 6 9.7550 -6.0120 8.0153 19 1 9.5263 -6.5288 7.0948 20 6 10.1795 -6.7272 9.1247 21 7 10.4584 -6.0978 10.2457 22 14 10.3553 -8.5844 9.0276 23 1 9.9825 -9.0464 7.6664 24 1 11.7627 -8.9638 9.3114 25 1 9.4601 -9.2194 10.0278 26 6 8.8416 -4.7632 5.8416 27 6 8.3129 -4.1221 4.7387 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6768 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7215 -1.2490 37 1 3.9877 -0.4644 0.8055 38 1 3.4828 -2.5520 2.6393 39 1 3.4820 -1.0110 3.5301 40 1 7.8096 -2.5726 2.6740 41 1 7.8101 -1.0317 3.5649 42 1 8.1169 -0.9849 5.9680 43 1 9.0478 -2.1200 7.9432 44 1 10.7550 -6.5981 11.0220 45 1 9.0478 -5.8227 5.8037 46 1 8.1052 -4.6808 3.8381 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733397395.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:47 Heat of formation + Delta-G solvation = -156.838478 kcal Electronic energy + Delta-G solvation = -27330.459108 eV Core-core repulsion = 23184.911596 eV Total energy + Delta-G solvation = -4145.547512 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.88751 -41.08241 -40.73855 -38.64671 -37.52439 -36.66308 -35.70289 -34.38318 -32.24628 -31.84847 -29.80280 -28.22738 -28.00866 -27.69948 -26.41347 -23.99421 -23.70392 -22.36826 -22.00242 -20.79201 -19.91751 -18.96097 -18.65756 -18.22882 -17.80961 -17.30090 -16.87705 -16.57322 -16.33328 -16.18569 -15.86313 -15.58194 -15.28420 -15.07905 -14.87336 -14.73511 -14.51627 -14.35533 -14.02844 -13.77256 -13.63039 -13.42756 -13.33183 -13.06592 -13.06282 -12.90627 -12.66740 -12.62037 -12.43567 -12.27163 -12.10561 -11.91066 -11.87505 -11.74099 -11.73265 -11.21569 -10.86344 -10.83466 -10.35904 -9.85207 -9.07786 -8.50364 -6.18780 0.38622 0.54609 0.98063 1.35340 1.37278 1.47522 1.51841 1.53479 2.15700 2.24275 2.79646 3.11165 3.44281 3.48399 3.61631 3.82250 3.86213 3.90466 3.91528 4.13139 4.17373 4.20467 4.29645 4.34718 4.39137 4.53374 4.71787 4.72224 4.73122 4.83211 4.94650 4.95660 4.97853 5.00449 5.09097 5.11034 5.21203 5.23948 5.31060 5.32992 5.36649 5.49534 5.64961 5.66882 5.99026 6.11075 6.33849 6.53385 6.94289 7.07496 7.72210 8.72490 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.024781 B = 0.001685 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.613140 B =16608.792796 C =17006.299165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.082 4.082 3 C -0.141 4.141 4 C -0.141 4.141 5 C 0.523 3.477 6 O -0.575 6.575 7 N -0.715 5.715 8 C 0.125 3.875 9 C 0.467 3.533 10 O -0.525 6.525 11 O -0.353 6.353 12 C 0.132 3.868 13 C -0.184 4.184 14 C -0.040 4.040 15 C -0.207 4.207 16 C 0.125 3.875 17 O -0.227 6.227 18 C -0.415 4.415 19 H 0.105 0.895 20 C -0.021 4.021 21 N -0.917 5.917 22 Si 1.019 2.981 23 H -0.250 1.250 24 H -0.268 1.268 25 H -0.269 1.269 26 C -0.247 4.247 27 C -0.042 4.042 28 H 0.049 0.951 29 H 0.087 0.913 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.090 0.910 36 H 0.067 0.933 37 H 0.418 0.582 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.152 0.848 43 H 0.119 0.881 44 H 0.274 0.726 45 H 0.123 0.877 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.350 12.563 -24.275 31.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.085 4.085 3 C -0.198 4.198 4 C -0.198 4.198 5 C 0.312 3.688 6 O -0.454 6.454 7 N -0.372 5.372 8 C 0.001 3.999 9 C 0.311 3.689 10 O -0.415 6.415 11 O -0.269 6.269 12 C 0.059 3.941 13 C -0.185 4.185 14 C -0.058 4.058 15 C -0.226 4.226 16 C 0.074 3.926 17 O -0.133 6.133 18 C -0.491 4.491 19 H 0.122 0.878 20 C -0.219 4.219 21 N -0.555 5.555 22 Si 0.838 3.162 23 H -0.174 1.174 24 H -0.193 1.193 25 H -0.194 1.194 26 C -0.266 4.266 27 C -0.060 4.060 28 H 0.069 0.931 29 H 0.105 0.895 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.109 0.891 36 H 0.086 0.914 37 H 0.257 0.743 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.106 0.894 41 H 0.109 0.891 42 H 0.169 0.831 43 H 0.137 0.863 44 H 0.083 0.917 45 H 0.141 0.859 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -15.503 12.416 -23.523 30.787 hybrid contribution 0.817 -0.812 0.493 1.253 sum -14.686 11.604 -23.029 29.677 Atomic orbital electron populations 1.21688 0.91804 1.02295 1.02731 1.20876 0.98060 0.97230 0.92299 1.21910 1.01761 0.92394 1.03740 1.21910 1.01754 1.00294 0.95852 1.21237 0.81030 0.78673 0.87903 1.90711 1.56146 1.50038 1.48486 1.45796 1.07917 1.58709 1.24783 1.20693 0.85843 1.01928 0.91481 1.23584 0.91682 0.74321 0.79336 1.90644 1.70629 1.43457 1.36725 1.86609 1.23430 1.70676 1.46205 1.21752 0.74575 1.01509 0.96229 1.19259 1.08649 0.94172 0.96402 1.20923 0.94268 1.00226 0.90405 1.20467 1.09330 0.91802 1.01040 1.20022 0.91420 0.93449 0.87694 1.83947 1.71156 1.22763 1.35398 1.21898 1.47477 0.79311 1.00411 0.87819 1.26603 0.95707 1.06058 0.93547 1.70181 1.43854 1.38675 1.02788 0.84519 0.78611 0.73455 0.79575 1.17375 1.19298 1.19425 1.21260 1.09976 1.01070 0.94292 1.20982 0.94073 0.93801 0.97177 0.93149 0.89462 0.93165 0.91402 0.89137 0.92666 0.92697 0.89123 0.91410 0.74306 0.86355 0.86281 0.89394 0.89134 0.83087 0.86322 0.91733 0.85897 0.83935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.54 7.76 71.98 0.56 -0.98 16 2 C -0.08 -0.93 0.87 -52.93 -0.05 -0.98 16 3 C -0.14 -1.11 8.37 71.98 0.60 -0.51 16 4 C -0.14 -1.12 8.37 71.98 0.60 -0.52 16 5 C 0.52 9.39 6.48 87.66 0.57 9.95 16 6 O -0.58 -14.90 15.98 -3.01 -0.05 -14.95 16 7 N -0.72 -11.07 5.31 -466.79 -2.48 -13.55 16 8 C 0.13 2.09 6.27 85.63 0.54 2.62 16 9 C 0.47 9.27 8.03 71.24 0.57 9.85 16 10 O -0.52 -11.71 15.42 21.98 0.34 -11.37 16 11 O -0.35 -8.20 10.20 -51.43 -0.52 -8.73 16 12 C 0.13 3.04 5.59 71.24 0.40 3.43 16 13 C -0.18 -5.50 5.52 -19.83 -0.11 -5.61 16 14 C -0.04 -1.28 9.69 22.25 0.22 -1.07 16 15 C -0.21 -8.49 9.99 22.39 0.22 -8.27 16 16 C 0.13 6.07 6.65 22.58 0.15 6.22 16 17 O -0.23 -13.38 9.76 -22.68 -0.22 -13.60 16 18 C -0.42 -23.70 9.49 67.92 0.64 -23.06 16 19 H 0.10 5.41 5.20 -2.91 -0.02 5.40 16 20 C -0.02 -1.18 5.49 84.83 0.47 -0.71 16 21 N -0.92 -55.50 13.67 21.61 0.30 -55.20 16 22 Si 1.02 42.11 29.55 68.60 2.03 44.14 16 23 H -0.25 -9.52 7.11 99.48 0.71 -8.82 16 24 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 25 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 26 C -0.25 -10.37 9.17 22.39 0.21 -10.17 16 27 C -0.04 -1.40 9.69 22.25 0.22 -1.18 16 28 H 0.05 0.74 8.10 -2.39 -0.02 0.72 16 29 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.05 0.74 8.10 -2.39 -0.02 0.72 16 31 H 0.07 0.47 7.57 -2.38 -0.02 0.45 16 32 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.07 0.48 7.56 -2.39 -0.02 0.46 16 37 H 0.42 5.49 6.28 -92.71 -0.58 4.91 16 38 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.09 1.82 8.08 -2.39 -0.02 1.80 16 41 H 0.09 1.84 8.07 -2.39 -0.02 1.82 16 42 H 0.15 3.69 8.06 -2.91 -0.02 3.66 16 43 H 0.12 4.78 8.06 -2.91 -0.02 4.76 16 44 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 45 H 0.12 5.24 5.64 -2.91 -0.02 5.23 16 46 H 0.14 3.74 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -74.51 392.72 5.61 -68.91 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: 0.42 Total: 25.34 kcal Atomic # 6 Polarization: -26.79 SS G_CDS: 5.80 Total: -20.98 kcal Atomic # 7 Polarization: -66.57 SS G_CDS: -2.18 Total: -68.76 kcal Atomic # 8 Polarization: -48.19 SS G_CDS: -0.46 Total: -48.64 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -74.51 5.61 -68.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733397395.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.933 kcal (2) G-P(sol) polarization free energy of solvation -74.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds