Wall clock time and date at job start Tue Mar 31 2020 18:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47038 * 2 1 4 4 C 1.53008 * 109.47050 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.46541 * 305.00088 * 4 3 2 6 6 O 1.42893 * 109.47021 * 64.99649 * 4 3 2 7 7 C 1.52997 * 109.46775 * 185.00325 * 4 3 2 8 8 C 1.50705 * 109.46884 * 175.00174 * 7 4 3 9 9 O 1.20826 * 119.99902 * 359.97438 * 8 7 4 10 10 O 1.34221 * 119.99994 * 179.97438 * 8 7 4 11 11 C 1.45202 * 117.00249 * 179.97438 * 10 8 7 12 12 C 1.50692 * 109.47336 * 179.97438 * 11 10 8 13 13 O 1.21284 * 120.00583 * 0.02562 * 12 11 10 14 14 N 1.34784 * 119.99970 * 179.97438 * 12 11 10 15 15 C 1.39238 * 120.00060 * 175.70723 * 14 12 11 16 16 C 1.39474 * 119.83864 * 215.01922 * 15 14 12 17 17 C 1.36371 * 120.17349 * 179.76556 * 16 15 14 18 18 C 1.40877 * 119.82573 * 0.50642 * 17 16 15 19 19 C 1.41149 * 120.16252 * 179.72184 * 18 17 16 20 20 H 1.07998 * 119.99782 * 214.80570 * 19 18 17 21 21 C 1.39909 * 120.00215 * 34.80390 * 19 18 17 22 22 N 1.30869 * 119.99807 * 355.56370 * 21 19 18 23 23 Si 1.86798 * 120.00115 * 175.55913 * 21 19 18 24 24 H 1.48499 * 109.47434 * 90.00097 * 23 21 19 25 25 H 1.48497 * 109.47113 * 210.00619 * 23 21 19 26 26 H 1.48504 * 109.47003 * 330.00186 * 23 21 19 27 27 C 1.40861 * 119.66892 * 359.74672 * 18 17 16 28 28 C 1.36370 * 119.83489 * 359.97438 * 27 18 17 29 29 H 1.09003 * 109.47055 * 299.99831 * 1 2 3 30 30 H 1.08996 * 109.47395 * 60.00136 * 1 2 3 31 31 H 1.08995 * 109.46912 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47055 * 240.00169 * 2 1 3 33 33 H 1.08996 * 109.47395 * 119.99864 * 2 1 3 34 34 H 1.09003 * 109.47060 * 60.00172 * 3 2 1 35 35 H 1.08996 * 109.46916 * 300.00157 * 3 2 1 36 36 H 0.96701 * 114.00398 * 60.00572 * 6 4 3 37 37 H 1.08997 * 109.47235 * 54.99795 * 7 4 3 38 38 H 1.09003 * 109.46658 * 294.99085 * 7 4 3 39 39 H 1.09000 * 109.46938 * 300.00517 * 11 10 8 40 40 H 1.09004 * 109.46792 * 59.99706 * 11 10 8 41 41 H 0.96995 * 119.99731 * 355.71867 * 14 12 11 42 42 H 1.08004 * 119.90975 * 0.02562 * 16 15 14 43 43 H 1.08000 * 120.08989 * 180.25091 * 17 16 15 44 44 H 0.96999 * 120.00213 * 179.97438 * 22 21 19 45 45 H 1.08012 * 120.08494 * 179.97438 * 27 18 17 46 46 H 1.08004 * 119.92172 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9336 0.8530 0.8409 6 8 4.0458 0.8733 -1.2219 7 6 4.0800 2.8795 0.1252 8 6 5.5820 2.8705 0.2480 9 8 6.1828 1.8223 0.2366 10 8 6.2523 4.0270 0.3701 11 6 7.6973 3.9425 0.4844 12 6 8.2732 5.3293 0.6114 13 8 7.5381 6.2940 0.6065 14 7 9.6051 5.4975 0.7314 15 6 10.1450 6.7807 0.7587 16 6 11.3867 7.0237 0.1718 17 6 11.9197 8.2788 0.1904 18 6 11.2177 9.3290 0.8140 19 6 11.7655 10.6296 0.8425 20 1 11.6017 11.2658 1.6997 21 6 12.5207 11.0945 -0.2396 22 7 12.7924 10.2950 -1.2394 23 14 13.1409 12.8564 -0.2573 24 1 14.4796 12.9165 0.3826 25 1 13.2412 13.3318 -1.6606 26 1 12.1948 13.7218 0.4919 27 6 9.9666 9.0746 1.4092 28 6 9.4438 7.8156 1.3776 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6766 1.9564 0.8900 35 1 1.6766 1.9563 -0.8899 36 1 3.7602 1.3478 -2.0146 37 1 3.6457 3.3430 1.0110 38 1 3.7913 3.4462 -0.7601 39 1 7.9584 3.3581 1.3667 40 1 8.1045 3.4603 -0.4043 41 1 10.1874 4.7248 0.7986 42 1 11.9255 6.2166 -0.3023 43 1 12.8794 8.4663 -0.2680 44 1 13.3157 10.6174 -1.9899 45 1 9.4228 9.8748 1.8895 46 1 8.4848 7.6188 1.8340 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000735951809.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:28 Heat of formation + Delta-G solvation = -164.519490 kcal Electronic energy + Delta-G solvation = -27228.338023 eV Core-core repulsion = 23082.457437 eV Total energy + Delta-G solvation = -4145.880586 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.83821 -39.63762 -38.38282 -37.31135 -36.32794 -34.53704 -34.49001 -33.00681 -31.96024 -29.89545 -29.53137 -28.46304 -27.48897 -24.82585 -23.27750 -21.76858 -21.66234 -21.03652 -20.74975 -19.80749 -17.92812 -17.56286 -17.31920 -17.19348 -16.68587 -16.35420 -16.09666 -15.57913 -15.19045 -15.13796 -14.63383 -14.47642 -14.01247 -13.89681 -13.69025 -13.41650 -12.90262 -12.74530 -12.59629 -12.46319 -12.25925 -12.16046 -12.10570 -11.74554 -11.71080 -11.41108 -11.21004 -11.18798 -11.09022 -11.06270 -10.85749 -10.75233 -10.72923 -10.37271 -10.06529 -9.53789 -9.49546 -9.18016 -8.93752 -7.58844 -6.92208 -6.65037 -4.37835 2.02179 2.19550 2.46266 2.95053 3.05499 3.08458 3.12179 3.26869 3.61547 3.95751 3.96961 4.13549 4.32942 4.52642 4.63361 4.66343 4.71072 4.77542 4.91064 4.97200 5.02021 5.03884 5.10314 5.15907 5.33021 5.41402 5.54125 5.61548 5.65542 5.81722 5.90084 6.14892 6.20737 6.39707 6.67767 6.85871 7.02600 7.14991 7.25220 7.28742 7.54787 7.59934 7.68262 7.81394 8.02453 8.17536 8.27588 8.55798 8.64597 8.89423 8.95441 10.25989 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.034593 B = 0.001599 C = 0.001574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.226572 B =17502.936919 C =17786.335828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.152 4.152 4 C 0.119 3.881 5 H 0.107 0.893 6 O -0.547 6.547 7 C -0.148 4.148 8 C 0.460 3.540 9 O -0.495 6.495 10 O -0.333 6.333 11 C 0.052 3.948 12 C 0.498 3.502 13 O -0.510 6.510 14 N -0.645 5.645 15 C 0.000 4.000 16 C -0.118 4.118 17 C -0.141 4.141 18 C 0.101 3.899 19 C -0.460 4.460 20 H 0.076 0.924 21 C 0.069 3.931 22 N -0.811 5.811 23 Si 0.916 3.084 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.263 1.263 27 C -0.206 4.206 28 C -0.084 4.084 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.371 0.629 37 H 0.116 0.884 38 H 0.110 0.890 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.398 0.602 42 H 0.092 0.908 43 H 0.133 0.867 44 H 0.278 0.722 45 H 0.097 0.903 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.557 -17.101 0.882 23.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.190 4.190 4 C 0.059 3.941 5 H 0.125 0.875 6 O -0.351 6.351 7 C -0.186 4.186 8 C 0.302 3.698 9 O -0.382 6.382 10 O -0.248 6.248 11 C -0.025 4.025 12 C 0.283 3.717 13 O -0.385 6.385 14 N -0.290 5.290 15 C -0.092 4.092 16 C -0.138 4.138 17 C -0.161 4.161 18 C 0.098 3.902 19 C -0.491 4.491 20 H 0.095 0.905 21 C -0.146 4.146 22 N -0.438 5.438 23 Si 0.741 3.259 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.187 1.187 27 C -0.226 4.226 28 C -0.104 4.104 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.217 0.783 37 H 0.134 0.866 38 H 0.129 0.871 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.232 0.768 42 H 0.110 0.890 43 H 0.150 0.850 44 H 0.089 0.911 45 H 0.115 0.885 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -16.499 -17.141 1.047 23.815 hybrid contribution 0.426 0.787 -0.528 1.039 sum -16.074 -16.354 0.519 22.937 Atomic orbital electron populations 1.21787 0.95833 1.01717 1.01746 1.21450 0.95564 0.96017 1.02842 1.22346 0.95032 0.98334 1.03271 1.21805 0.92303 0.90863 0.89098 0.87495 1.86721 1.76831 1.56518 1.15056 1.22252 0.88422 1.01117 1.06840 1.23602 0.91534 0.81657 0.73035 1.90715 1.70106 1.32472 1.44885 1.86561 1.20586 1.34609 1.83051 1.22705 0.78479 0.96790 1.04535 1.19958 0.83188 0.89819 0.78703 1.90732 1.58707 1.41023 1.48005 1.42791 1.06036 1.08370 1.71815 1.17232 0.97584 0.83661 1.10723 1.20310 0.95216 0.97526 1.00742 1.21197 1.01266 0.90201 1.03479 1.17744 0.89715 0.93088 0.89614 1.19514 1.27662 0.98946 1.02938 0.90543 1.25889 0.93877 0.99884 0.94914 1.69755 1.30650 1.36314 1.07061 0.86184 0.79604 0.81917 0.78213 1.19496 1.20279 1.18698 1.20807 0.96881 0.95545 1.09322 1.20406 0.98741 0.92816 0.98444 0.92791 0.92776 0.92700 0.91192 0.91918 0.90623 0.91200 0.78265 0.86573 0.87139 0.88448 0.88279 0.76841 0.88959 0.84954 0.91083 0.88495 0.87441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.91 37.16 0.37 -0.37 16 2 C -0.12 -0.67 5.83 -26.73 -0.16 -0.83 16 3 C -0.15 -0.74 4.89 -26.72 -0.13 -0.87 16 4 C 0.12 0.83 2.51 -26.73 -0.07 0.77 16 5 H 0.11 0.89 7.96 -51.93 -0.41 0.48 16 6 O -0.55 -4.72 12.11 -49.66 -0.60 -5.32 16 7 C -0.15 -1.07 5.49 -27.88 -0.15 -1.23 16 8 C 0.46 5.36 7.84 36.01 0.28 5.64 16 9 O -0.50 -6.92 15.17 -24.05 -0.36 -7.29 16 10 O -0.33 -4.60 9.75 -45.88 -0.45 -5.05 16 11 C 0.05 0.69 5.95 36.00 0.21 0.90 16 12 C 0.50 8.64 7.74 -10.99 -0.09 8.55 16 13 O -0.51 -11.09 13.92 -14.10 -0.20 -11.29 16 14 N -0.65 -11.04 5.30 -9.74 -0.05 -11.09 16 15 C 0.00 0.00 6.31 -83.57 -0.53 -0.53 16 16 C -0.12 -2.64 9.90 -39.79 -0.39 -3.04 16 17 C -0.14 -3.59 8.62 -39.26 -0.34 -3.93 16 18 C 0.10 2.68 5.55 -106.80 -0.59 2.09 16 19 C -0.46 -12.17 9.02 -37.85 -0.34 -12.51 16 20 H 0.08 1.94 7.85 -52.49 -0.41 1.53 16 21 C 0.07 1.75 5.42 -17.34 -0.09 1.65 16 22 N -0.81 -20.92 10.60 55.55 0.59 -20.33 16 23 Si 0.92 18.85 29.56 -169.99 -5.03 13.82 16 24 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 25 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 26 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 27 C -0.21 -5.17 9.74 -39.26 -0.38 -5.55 16 28 C -0.08 -2.00 8.61 -39.79 -0.34 -2.34 16 29 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.44 7.82 -51.93 -0.41 0.04 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.37 1.84 9.05 45.56 0.41 2.25 16 37 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.10 1.06 8.13 -51.93 -0.42 0.64 16 40 H 0.10 1.14 8.13 -51.93 -0.42 0.71 16 41 H 0.40 5.15 8.82 -40.82 -0.36 4.79 16 42 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 43 H 0.13 3.47 6.13 -52.49 -0.32 3.15 16 44 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 45 H 0.10 2.31 8.06 -52.48 -0.42 1.89 16 46 H 0.11 2.52 6.22 -52.48 -0.33 2.20 16 LS Contribution 390.73 15.07 5.89 5.89 Total: -1.00 -33.63 390.73 -8.98 -42.62 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -6.03 Total: 9.63 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -2.74 Total: -11.60 kcal Atomic # 7 Polarization: -31.95 SS G_CDS: 0.54 Total: -31.41 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -1.61 Total: -28.94 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.63 -8.98 -42.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735951809.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.904 kcal (2) G-P(sol) polarization free energy of solvation -33.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds