Wall clock time and date at job start Tue Mar 31 2020 18:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47038 * 2 1 4 4 C 1.53008 * 109.47050 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.46541 * 305.00088 * 4 3 2 6 6 O 1.42893 * 109.47021 * 64.99649 * 4 3 2 7 7 C 1.52997 * 109.46775 * 185.00325 * 4 3 2 8 8 C 1.50705 * 109.46884 * 175.00174 * 7 4 3 9 9 O 1.20826 * 119.99902 * 359.97438 * 8 7 4 10 10 O 1.34221 * 119.99994 * 179.97438 * 8 7 4 11 11 C 1.45202 * 117.00249 * 179.97438 * 10 8 7 12 12 C 1.50692 * 109.47336 * 179.97438 * 11 10 8 13 13 O 1.21284 * 120.00583 * 0.02562 * 12 11 10 14 14 N 1.34784 * 119.99970 * 179.97438 * 12 11 10 15 15 C 1.39238 * 120.00060 * 175.70723 * 14 12 11 16 16 C 1.39474 * 119.83864 * 215.01922 * 15 14 12 17 17 C 1.36371 * 120.17349 * 179.76556 * 16 15 14 18 18 C 1.40877 * 119.82573 * 0.50642 * 17 16 15 19 19 C 1.41149 * 120.16252 * 179.72184 * 18 17 16 20 20 H 1.07998 * 119.99782 * 214.80570 * 19 18 17 21 21 C 1.39909 * 120.00215 * 34.80390 * 19 18 17 22 22 N 1.30869 * 119.99807 * 355.56370 * 21 19 18 23 23 Si 1.86798 * 120.00115 * 175.55913 * 21 19 18 24 24 H 1.48499 * 109.47434 * 90.00097 * 23 21 19 25 25 H 1.48497 * 109.47113 * 210.00619 * 23 21 19 26 26 H 1.48504 * 109.47003 * 330.00186 * 23 21 19 27 27 C 1.40861 * 119.66892 * 359.74672 * 18 17 16 28 28 C 1.36370 * 119.83489 * 359.97438 * 27 18 17 29 29 H 1.09003 * 109.47055 * 299.99831 * 1 2 3 30 30 H 1.08996 * 109.47395 * 60.00136 * 1 2 3 31 31 H 1.08995 * 109.46912 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47055 * 240.00169 * 2 1 3 33 33 H 1.08996 * 109.47395 * 119.99864 * 2 1 3 34 34 H 1.09003 * 109.47060 * 60.00172 * 3 2 1 35 35 H 1.08996 * 109.46916 * 300.00157 * 3 2 1 36 36 H 0.96701 * 114.00398 * 60.00572 * 6 4 3 37 37 H 1.08997 * 109.47235 * 54.99795 * 7 4 3 38 38 H 1.09003 * 109.46658 * 294.99085 * 7 4 3 39 39 H 1.09000 * 109.46938 * 300.00517 * 11 10 8 40 40 H 1.09004 * 109.46792 * 59.99706 * 11 10 8 41 41 H 0.96995 * 119.99731 * 355.71867 * 14 12 11 42 42 H 1.08004 * 119.90975 * 0.02562 * 16 15 14 43 43 H 1.08000 * 120.08989 * 180.25091 * 17 16 15 44 44 H 0.96999 * 120.00213 * 179.97438 * 22 21 19 45 45 H 1.08012 * 120.08494 * 179.97438 * 27 18 17 46 46 H 1.08004 * 119.92172 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9336 0.8530 0.8409 6 8 4.0458 0.8733 -1.2219 7 6 4.0800 2.8795 0.1252 8 6 5.5820 2.8705 0.2480 9 8 6.1828 1.8223 0.2366 10 8 6.2523 4.0270 0.3701 11 6 7.6973 3.9425 0.4844 12 6 8.2732 5.3293 0.6114 13 8 7.5381 6.2940 0.6065 14 7 9.6051 5.4975 0.7314 15 6 10.1450 6.7807 0.7587 16 6 11.3867 7.0237 0.1718 17 6 11.9197 8.2788 0.1904 18 6 11.2177 9.3290 0.8140 19 6 11.7655 10.6296 0.8425 20 1 11.6017 11.2658 1.6997 21 6 12.5207 11.0945 -0.2396 22 7 12.7924 10.2950 -1.2394 23 14 13.1409 12.8564 -0.2573 24 1 14.4796 12.9165 0.3826 25 1 13.2412 13.3318 -1.6606 26 1 12.1948 13.7218 0.4919 27 6 9.9666 9.0746 1.4092 28 6 9.4438 7.8156 1.3776 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6766 1.9564 0.8900 35 1 1.6766 1.9563 -0.8899 36 1 3.7602 1.3478 -2.0146 37 1 3.6457 3.3430 1.0110 38 1 3.7913 3.4462 -0.7601 39 1 7.9584 3.3581 1.3667 40 1 8.1045 3.4603 -0.4043 41 1 10.1874 4.7248 0.7986 42 1 11.9255 6.2166 -0.3023 43 1 12.8794 8.4663 -0.2680 44 1 13.3157 10.6174 -1.9899 45 1 9.4228 9.8748 1.8895 46 1 8.4848 7.6188 1.8340 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000735951809.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:27 Heat of formation + Delta-G solvation = -185.377769 kcal Electronic energy + Delta-G solvation = -27229.242506 eV Core-core repulsion = 23082.457437 eV Total energy + Delta-G solvation = -4146.785068 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.85160 -41.06744 -39.24522 -38.82886 -37.36120 -36.19103 -34.99737 -34.78022 -32.60333 -31.56773 -31.25124 -29.74908 -28.22785 -26.56188 -24.02408 -23.40749 -22.66862 -22.10913 -21.70192 -21.38426 -19.30524 -18.84666 -18.80122 -18.04045 -17.74798 -17.45820 -17.09569 -16.97923 -16.46342 -16.19002 -15.71105 -15.39094 -15.21356 -15.00948 -14.88361 -14.47949 -14.22192 -14.15887 -13.96336 -13.65985 -13.60432 -13.25924 -13.04531 -12.87182 -12.78643 -12.68781 -12.59561 -12.48700 -12.19122 -11.90596 -11.80402 -11.67558 -11.62506 -11.49185 -11.41253 -11.24201 -10.94632 -10.84368 -10.65030 -9.48615 -8.77509 -8.51707 -6.34689 0.73246 1.12245 1.14718 1.23512 1.40131 1.41337 1.53269 1.67538 2.23919 2.40372 2.79138 3.46027 3.54557 3.57569 3.67448 3.70503 3.99181 4.02472 4.07730 4.16827 4.25962 4.36747 4.38779 4.50750 4.58296 4.65726 4.73529 4.91295 4.95886 5.00784 5.08435 5.09932 5.12630 5.28787 5.30257 5.31462 5.40287 5.40916 5.50402 5.68113 5.87133 5.98811 6.11430 6.36985 6.55783 6.66735 6.69021 6.88808 6.95566 6.97258 7.24680 8.41031 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.034593 B = 0.001599 C = 0.001574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.226572 B =17502.936919 C =17786.335828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.144 4.144 4 C 0.122 3.878 5 H 0.089 0.911 6 O -0.571 6.571 7 C -0.143 4.143 8 C 0.460 3.540 9 O -0.522 6.522 10 O -0.352 6.352 11 C 0.060 3.940 12 C 0.501 3.499 13 O -0.556 6.556 14 N -0.636 5.636 15 C 0.016 3.984 16 C -0.115 4.115 17 C -0.159 4.159 18 C 0.069 3.931 19 C -0.497 4.497 20 H 0.073 0.927 21 C 0.029 3.971 22 N -0.840 5.840 23 Si 0.988 3.012 24 H -0.259 1.259 25 H -0.270 1.270 26 H -0.263 1.263 27 C -0.221 4.221 28 C -0.096 4.096 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.385 0.615 37 H 0.137 0.863 38 H 0.132 0.868 39 H 0.125 0.875 40 H 0.121 0.879 41 H 0.422 0.578 42 H 0.127 0.873 43 H 0.120 0.880 44 H 0.285 0.715 45 H 0.097 0.903 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.418 -18.045 0.490 25.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.181 4.181 4 C 0.063 3.937 5 H 0.107 0.893 6 O -0.378 6.378 7 C -0.180 4.180 8 C 0.304 3.696 9 O -0.410 6.410 10 O -0.268 6.268 11 C -0.017 4.017 12 C 0.288 3.712 13 O -0.434 6.434 14 N -0.283 5.283 15 C -0.077 4.077 16 C -0.135 4.135 17 C -0.179 4.179 18 C 0.066 3.934 19 C -0.528 4.528 20 H 0.091 0.909 21 C -0.184 4.184 22 N -0.468 5.468 23 Si 0.809 3.191 24 H -0.184 1.184 25 H -0.194 1.194 26 H -0.187 1.187 27 C -0.241 4.241 28 C -0.116 4.116 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.234 0.766 37 H 0.155 0.845 38 H 0.150 0.850 39 H 0.142 0.858 40 H 0.138 0.862 41 H 0.260 0.740 42 H 0.145 0.855 43 H 0.138 0.862 44 H 0.096 0.904 45 H 0.115 0.885 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -17.361 -18.141 0.658 25.118 hybrid contribution 0.599 0.898 -0.400 1.151 sum -16.762 -17.243 0.258 24.049 Atomic orbital electron populations 1.21772 0.95146 1.01832 1.02166 1.21441 0.96134 0.96432 1.01981 1.22278 0.93228 0.98043 1.04557 1.21770 0.93539 0.90277 0.88111 0.89304 1.86678 1.77443 1.57495 1.16189 1.22423 0.85181 1.01678 1.08757 1.24422 0.92862 0.80577 0.71765 1.90705 1.70895 1.33126 1.46263 1.86570 1.20785 1.36032 1.83401 1.22645 0.78663 0.93573 1.06781 1.20684 0.82591 0.91150 0.76776 1.90717 1.59763 1.43075 1.49873 1.42669 1.06713 1.07416 1.71494 1.17279 0.96903 0.85230 1.08302 1.20564 0.95447 0.97429 1.00033 1.21182 1.01130 0.91333 1.04280 1.18059 0.90564 0.93877 0.90883 1.19742 1.29675 0.99453 1.03902 0.90871 1.26733 0.93504 1.04103 0.94011 1.69816 1.31158 1.38176 1.07623 0.85105 0.79157 0.76345 0.78482 1.18391 1.19408 1.18683 1.20930 0.96896 0.96441 1.09820 1.20527 0.98968 0.93033 0.99042 0.92333 0.92344 0.92820 0.92288 0.92633 0.89379 0.89794 0.76611 0.84470 0.85041 0.85752 0.86161 0.74042 0.85489 0.86237 0.90418 0.88511 0.87349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 71.98 0.71 -0.51 16 2 C -0.12 -1.20 5.83 30.59 0.18 -1.03 16 3 C -0.14 -1.08 4.89 30.60 0.15 -0.93 16 4 C 0.12 1.51 2.51 30.60 0.08 1.59 16 5 H 0.09 1.41 7.96 -2.39 -0.02 1.39 16 6 O -0.57 -9.10 12.11 -135.18 -1.64 -10.74 16 7 C -0.14 -1.71 5.49 29.85 0.16 -1.55 16 8 C 0.46 9.81 7.84 71.24 0.56 10.37 16 9 O -0.52 -13.73 15.17 27.03 0.41 -13.32 16 10 O -0.35 -9.01 9.75 -44.97 -0.44 -9.45 16 11 C 0.06 1.42 5.95 71.23 0.42 1.84 16 12 C 0.50 16.44 7.74 87.65 0.68 17.12 16 13 O -0.56 -23.84 13.92 15.75 0.22 -23.62 16 14 N -0.64 -20.34 5.30 -303.10 -1.61 -21.94 16 15 C 0.02 0.69 6.31 38.57 0.24 0.93 16 16 C -0.11 -5.04 9.90 22.13 0.22 -4.82 16 17 C -0.16 -8.22 8.62 22.48 0.19 -8.03 16 18 C 0.07 3.76 5.55 -21.28 -0.12 3.65 16 19 C -0.50 -27.21 9.02 23.39 0.21 -27.00 16 20 H 0.07 3.87 7.85 -2.91 -0.02 3.85 16 21 C 0.03 1.46 5.42 85.24 0.46 1.92 16 22 N -0.84 -44.06 10.60 21.82 0.23 -43.83 16 23 Si 0.99 38.89 29.56 68.60 2.03 40.92 16 24 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 25 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 26 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 27 C -0.22 -11.47 9.74 22.48 0.22 -11.25 16 28 C -0.10 -4.59 8.61 22.14 0.19 -4.40 16 29 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.06 0.71 7.82 -2.39 -0.02 0.69 16 33 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.38 3.17 9.05 -74.06 -0.67 2.50 16 37 H 0.14 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.12 2.30 8.13 -2.39 -0.02 2.28 16 40 H 0.12 2.37 8.13 -2.38 -0.02 2.35 16 41 H 0.42 9.54 8.82 -92.71 -0.82 8.72 16 42 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 43 H 0.12 6.43 6.13 -2.91 -0.02 6.41 16 44 H 0.29 13.57 8.30 -92.71 -0.77 12.81 16 45 H 0.10 4.83 8.06 -2.90 -0.02 4.81 16 46 H 0.11 5.14 6.22 -2.91 -0.02 5.12 16 Total: -1.00 -75.00 390.73 3.30 -71.71 By element: Atomic # 1 Polarization: 32.85 SS G_CDS: -0.47 Total: 32.37 kcal Atomic # 6 Polarization: -26.67 SS G_CDS: 4.56 Total: -22.10 kcal Atomic # 7 Polarization: -64.39 SS G_CDS: -1.38 Total: -65.77 kcal Atomic # 8 Polarization: -55.68 SS G_CDS: -1.45 Total: -57.13 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 2.03 Total: 40.92 kcal Total: -75.00 3.30 -71.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735951809.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.672 kcal (2) G-P(sol) polarization free energy of solvation -75.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds